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New Insights into the Ecology and Physiology of Methanomassiliicoccales from Terrestrial and Aquatic Environments
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Gracilibacteraceae
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Toxicity: Resistance Pathways for Metalloids and Toxic Metals
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Physiological Ecology of Methanogens
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The Family Rikenellaceae
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Methane Emission, Rumen Fermentation, and Microbial Community Response to a Nitrooxy Compound in Low-Quality Forage Fed Hu Sheep
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Genome of the candidate phylum Aminicenantes bacterium from a deep subsurface thermal aquifer revealed its fermentative saccharolytic lifestyle
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Archaeal communities in the sediments of different mangrove stands at Dongzhaigang, China
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Microbial Community Composition and Function in Sediments from the Pearl River Mouth Basin
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The division “Synergistes”
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Function of genetically encoded pyrrolysine in corrinoid-dependent methylamine methyltransferases
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Human Genetics Shape the Gut Microbiome
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Magnetite as an enhancer in methanogenic degradation of volatile fatty acids under ammonia-stressed condition
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A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions
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Temperature effects on structure and function of the methanogenic microbial communities in two paddy soils and one desert soil
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The potential importance of methylated substrates in methane production within three northern Minnesota peatlands
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MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
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Acid Resistance in Escherichia coli
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Trehalose in Archaebacteria
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Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii
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Facile reduction of arsenate in methanogenic sludge
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Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen
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The growing tree of Archaea: new perspectives on their diversity, evolution and ecology
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Genomics and metagenomics of trimethylamine-utilizing Archaea in the human gut microbiome
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Three decades of global methane sources and sinks
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Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota
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Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
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Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
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Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea
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An evolving view of methane metabolism in the Archaea
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The host-associated archaeome
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RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
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Shifting the genomic gold standard for the prokaryotic species definition
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A Novel Putrescine Exporter SapBCDF of Escherichia coli
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Methanococcus jannaschii Uses a Pyruvoyl-dependent Arginine Decarboxylase in Polyamine Biosynthesis
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Polyamine function in archaea and bacteria
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Mercury methylation by anaerobic microorganisms: A review
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Fast unfolding of communities in large networks
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Prokka: rapid prokaryotic genome annotation
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MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
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JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
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DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
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FROGS: Find, Rapidly, OTUs with Galaxy Solution
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Hologenome theory supported by cooccurrence networks of species-specific bacterial communities in siphonous algae ( Caulerpa )
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Phylogenetic and genomic analysis ofMethanomassiliicoccalesin wetlands and animal intestinal tracts reveals clade-specific habitat preferences
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Methanogen communities in stools of humans of different age and health status and co-occurrence with bacteria
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Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis
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Methanogenesis and the Wood–Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association
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New insights on trehalose: a multifunctional molecule
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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
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MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes
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BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
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Biogeography Revisited with Network Theory: Retracing the History of Hydrothermal Vent Communities
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Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics
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Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov.
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Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces
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Methanolinea mesophila sp. nov., a hydrogenotrophic methanogen isolated from rice field soil, and proposal of the archaeal family Methanoregulaceae fam. nov. within the order Methanomicrobiales
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Reclassification of Desulfobacterium anilini as Desulfatiglans anilini comb. nov. within Desulfatiglans gen. nov., and description of a 4-chlorophenol-degrading sulfate-reducing bacterium, Desulfatiglans parachlorophenolica sp. nov.
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Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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metaSPAdes: a new versatile metagenomic assembler
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CAP3: A DNA Sequence Assembly Program
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A genomic update on clostridial phylogeny: G ram‐negative spore formers and other misplaced clostridia
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Microbial community of the deep‐sea brine L ake K ryos seawater–brine interface is active below the chaotropicity limit of life as revealed by recovery of mRNA
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Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
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Metagenomic analyses highlight the symbiotic association between the glacier stonefly Andiperla willinki and its bacterial gut community
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Evidence for non‐methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales
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Metagenomic insights into the metabolism and evolution of a new Thermoplasmata order ( Candidatus Gimiplasmatales)
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Seasonal dynamics of bacterial communities in a Betula albosinensis forest
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Evidence for the involvement of two heterodisulfide reductases in the energy‐conserving system of Methanomassiliicoccus luminyensis
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Energy conservation in the gut microbe Methanomassiliicoccus luminyensis is based on membrane‐bound ferredoxin oxidation coupled to heterodisulfide reduction
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Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture
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Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stable-isotope probing
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Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake
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Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age‐associated increase of the diversity
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Syntrophic butyrate and propionate oxidation processes: from genomes to reaction mechanisms
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Active prokaryotic population dynamics exhibit high correlation to reactor performance during methane production from acid hydrolysates ofAgave tequilanavar.azulbagasse
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The microbiome of uncontacted Amerindians
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Global prevalence and distribution of genes and microorganisms involved in mercury methylation
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The Genetic Basis for Bacterial Mercury Methylation
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Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics
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Methane production from coal by a single methanogen
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Unusual Butane- and Pentanetriol-Based Tetraether Lipids in Methanomassiliicoccus luminyensis, a Representative of the Seventh Order of Methanogens
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Illuminating Microbial Dark Matter in Meromictic Sakinaw Lake
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Choline and N , N -Dimethylethanolamine as Direct Substrates for Methanogens
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“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens
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New Mode of Energy Metabolism in the Seventh Order of Methanogens as Revealed by Comparative Genome Analysis of “Candidatus Methanoplasma termitum”
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Methanogenesis from Methanol and Methylamines and Acetogenesis from Hydrogen and Carbon Dioxide in the Sediments of a Eutrophic Lake
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Metabolism of Trimethylamine, Choline, and Glycine Betaine by Sulfate-Reducing and Methanogenic Bacteria in Marine Sediments
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Comparison of Assimilatory Organic Nitrogen, Sulfur, and Carbon Sources for Growth of Methanobacterium Species
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Formation of dimethyl sulfide and methanethiol in anoxic freshwater sediments
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Methanogenic Inhibition by Arsenic Compounds
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Genome Sequence of “Candidatus Methanomethylophilus alvus” Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens
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Distribution of polyamines in methanogenic bacteria
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CHOLINE FERMENTATION BY DESULFOVIBRIO DESULFURICANS
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Microbial Methylation of Metalloids: Arsenic, Antimony, and Bismuth
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Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
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Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut
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Occurrence, diversity, and abundance of methanogenic archaea in terrestrial hot springs of Kamchatka and Saõ Miguel Island
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Diversity of methanogenic archaea from the 2012 terrestrial hot spring (Valley of Geysers, Kamchatka)
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Structure of microbial communities of peat soils in two bogs in Siberian tundra and forest zones
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Archaeal habitats — from the extreme to the ordinary
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Genomic Insights into Syntrophy: The Paradigm for Anaerobic Metabolic Cooperation
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Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette
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Growth Characteristics ofMethanomassiliicoccus luminyensisand Expression of Methyltransferase Encoding Genes
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Genome sequence-based species delimitation with confidence intervals and improved distance functions
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Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine
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The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health
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Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages
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Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
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Genomic and transcriptomic insights into methanogenesis potential of novel methanogens from mangrove sediments
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The complete genome sequence of the methanogenic archaeon ISO4-H5 provides insights into the methylotrophic lifestyle of a ruminal representative of the Methanomassiliicoccales
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Physiology, Ecology, Phylogeny, and Genomics of Microorganisms Capable of Syntrophic Metabolism
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Candidatus Methanogranum caenicola: a Novel Methanogen from the Anaerobic Digested Sludge, and Proposal of Methanomassiliicoccaceae fam. nov. and Methanomassiliicoccales ord. nov., for a Methanogenic Lineage of the Class Thermoplasmata
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The khmer software package: enabling efficient nucleotide sequence analysis
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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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Noteworthy Facts about a Methane-Producing Microbial Community Processing Acidic Effluent from Sugar Beet Molasses Fermentation
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Gephi: An Open Source Software for Exploring and Manipulating Networks
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Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
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AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries
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Archaeal and bacterial communities in three alkaline hot springs in Heart Lake Geyser Basin, Yellowstone National Park
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Analysis of methane-producing and metabolizing archaeal and bacterial communities in sediments of the northern South China Sea and coastal Mai Po Nature Reserve revealed by PCR amplification of mcrA and pmoA genes
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Identification of Complex Rumen Microbiome Interaction Within Diverse Functional Niches as Mechanisms Affecting the Variation of Methane Emissions in Bovine
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Biosensors for Inorganic and Organic Arsenicals
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Archaea and the human gut: New beginning of an old story
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Ancestral archaea expanded the genetic code with pyrrolysine
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Thermophilic and mesophilic anaerobic digestion of soybean molasses: A performance vs. stability trade-off
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Archaeal key-residents within the human microbiome: characteristics, interactions and involvement in health and disease
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inferred← citeshttps://doi.org/10.1016/j.renene.2022.06.055openalex-snapshot
Saponification with calcium enhanced methane yield in anaerobic digestion of fat, oil, and grease: The essential role of calcium
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.157570openalex-snapshot
Impacts of cyanobacterial biomass and nitrate nitrogen on methanogens in eutrophic lakes
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.162839openalex-snapshot
How arsenic contamination influences downslope wetland plant and microbial community structure and function
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.171137openalex-snapshot
Adaptive response of prokaryotic communities to extreme pollution flooding in a Paleolithic rock art cave (Pindal Cave, northern Spain)
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.171362openalex-snapshot
Aragonite crystallization in a sulfate-rich hypersaline wetland under dry Mediterranean climate (Laguna Honda, eastern Guadalquivir basin, S Spain)
inferred← citeshttps://doi.org/10.1016/j.soilbio.2023.109055openalex-snapshot
Chemolithotrophic microbiome of buried soil layers following volcanic eruptions: A potential huge carbon sink
inferred← citeshttps://doi.org/10.1016/j.synbio.2023.12.007openalex-snapshot
Good and bad dispositions between archaea and bacteria in the human gut: New insights from metagenomic survey and co-occurrence analysis
inferred← citeshttps://doi.org/10.1016/j.wasman.2023.01.027openalex-snapshot
Start-up strategies of electromethanogenic reactors for methane production from cattle manure
inferred← citeshttps://doi.org/10.1016/j.watres.2025.123334openalex-snapshot
Spatiotemporal profiling and succession of microbial communities in landfills based on a cross-kingdom abundance quantification method
inferred← citeshttps://doi.org/10.1038/s41467-022-31038-4openalex-snapshot
Factors shaping the abundance and diversity of the gut archaeome across the animal kingdom
inferred← citeshttps://doi.org/10.1038/s41467-025-56133-0openalex-snapshot
Metabolic interactions underpinning high methane fluxes across terrestrial freshwater wetlands
inferred← citeshttps://doi.org/10.1038/s41598-022-26299-4openalex-snapshot
A metagenomic insight into the microbiomes of geothermal springs in the Subantarctic Kerguelen Islands
inferred← citeshttps://doi.org/10.1088/1755-1315/1167/1/012013openalex-snapshot
Methanogenic archaea community in relation to methane production in oil palm planted on tropical peatland
inferred← citeshttps://doi.org/10.1093/bioadv/vbag069openalex-snapshot
The pangenome: a statistical model, not a fixed biological property
inferred← citeshttps://doi.org/10.1093/ismeco/ycaf027openalex-snapshot
Terrestrial-aquatic connectivity structures microbial communities during the formation of thermokarst lakes
inferred← citeshttps://doi.org/10.1093/ismejo/wrad033openalex-snapshot
Members of the class Candidatus Ordosarchaeia imply an alternative evolutionary scenario from methanogens to haloarchaea
inferred← citeshttps://doi.org/10.1093/ismejo/wrag078openalex-snapshot
Cultivation and molecular profiling reveal ammonia-oxidizing archaea as skin commensals
inferred← citeshttps://doi.org/10.1099/ijsem.0.005545openalex-snapshot
Candidatus List No. 4: Lists of names of prokaryotic Candidatus taxa
inferred← citeshttps://doi.org/10.1099/ijsem.0.006839openalex-snapshot
Methanosuratincola petrocarbonis gen. nov., sp. nov., a methyl-reducing methanogen isolated from Shengli oil field, and proposal of Methanosuratincolaceae fam. nov., Methanosuratincolales ord. nov. and Methanosuratincolia classis nov. in the phylum Thermoproteota
inferred← citeshttps://doi.org/10.1101/2024.08.05.606590openalex-snapshot
Molecular Tracking and Cultivation Reveal Ammonia-Oxidizing Archaea as Emerging Commensals of the Human Skin Microbiome
inferred← citeshttps://doi.org/10.1101/2025.09.30.679632openalex-snapshot
Tree microbiomes and methane exchange in upland forests
inferred← citeshttps://doi.org/10.1111/1462-2920.16526openalex-snapshot
Biogeography of microbial communities in high‐latitude ecosystems: Contrasting drivers for methanogens, methanotrophs and global prokaryotes
inferred← citeshttps://doi.org/10.1111/1462-2920.16558openalex-snapshot
Microbiome mediating methane and nitrogen transformations in a subterranean estuary
inferred← citeshttps://doi.org/10.1128/mbio.03017-25openalex-snapshot
Active methylotrophic methanogenesis by a microbial consortium enriched from a terrestrial meteorite impact crater
inferred← citeshttps://doi.org/10.1128/mra.00443-21openalex-snapshot
Full Genome Sequence of a Methanomassiliicoccales Representative Enriched from Peat Soil
inferred← citeshttps://doi.org/10.1128/msystems.00017-25openalex-snapshot
Time-series metatranscriptomics reveals differential salinity effects on the methanogenic food web in paddy soil
inferred← citeshttps://doi.org/10.1134/s0026261722602901openalex-snapshot
Methane Cycle in a Littoral Site of a Temperate Freshwater Lake
inferred← citeshttps://doi.org/10.1146/annurev-micro-041020-024935openalex-snapshot
Diversity and Evolution of Methane-Related Pathways in Archaea
inferred← citeshttps://doi.org/10.1186/s12866-026-05457-yopenalex-snapshot
Metagenomic and cultivation-based description of a syntrophic butyrate-oxidizing bacterium from a thermophilic and high-ammonia biogas process
inferred← citeshttps://doi.org/10.1371/journal.pone.0303004openalex-snapshot
Highly diverse–Low abundance methanogenic communities in hypersaline microbial mats of Guerrero Negro B.C.S., assessed through microcosm experiments
inferred← citeshttps://doi.org/10.1590/2675-2824070.22134agbopenalex-snapshot
First description of archaeal communities in carbonate-rich seafloor and subseafloor sediments from the Southwestern Atlantic slope
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1525368/v1openalex-snapshot
Metagenome-assembled genomes reveal many novel microbial lineages in the geothermal springs of the subantarctic Kerguelen Islands
inferred← citeshttps://doi.org/10.21203/rs.3.rs-7121971/v1openalex-snapshot
Metatranscriptomic changes in the propionate pathway and carbohydrate enzyme revealed the rebalancing mechanism of rumen microbiota after CH4 inhibition by 3-NOP
inferred← citeshttps://doi.org/10.3389/fmicb.2021.691502openalex-snapshot
Long-Term Mootral Application Impacts Methane Production and the Microbial Community in the Rumen Simulation Technique System
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1233221openalex-snapshot
Perspective on the use of methanogens in lithium recovery from brines
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1296008openalex-snapshot
Evolving understanding of rumen methanogen ecophysiology
inferred← citeshttps://doi.org/10.3390/ijms25010673openalex-snapshot
Methanogenic Archaea in the Pediatric Inflammatory Bowel Disease in Relation to Disease Type and Activity
inferred← citeshttps://doi.org/10.3390/ijms26020539openalex-snapshot
Pyrrolysine Aminoacyl-tRNA Synthetase as a Tool for Expanding the Genetic Code
inferred← citeshttps://doi.org/10.3390/microorganisms11071674openalex-snapshot
Linking Groundwater to Surface Discharge Ecosystems: Archaeal, Bacterial, and Eukaryotic Community Diversity and Structure in Quebec (Canada)
inferred← citeshttps://doi.org/10.3390/microorganisms11112794openalex-snapshot
Methanomethylophilus alvi gen. nov., sp. nov., a Novel Hydrogenotrophic Methyl-Reducing Methanogenic Archaea of the Order Methanomassiliicoccales Isolated from the Human Gut and Proposal of the Novel Family Methanomethylophilaceae fam. nov.
inferred← citeshttps://doi.org/10.3390/su151511511openalex-snapshot
Structure and Assembly Mechanism of Archaeal Communities in Deep Soil Contaminated by Chlorinated Hydrocarbons
inferred← citeshttps://doi.org/10.34297/ajbsr.2022.15.002174openalex-snapshot
The Earth-Connected Human Superorganism Vs. The Machine
inferred← citeshttps://doi.org/10.34297/ajbsr.2023.20.002708openalex-snapshot
The Embodied Microbiome
inferred← citeshttps://doi.org/10.51847/i0v1glgdbvopenalex-snapshot
Children’s Inflammatory Bowel Disease and Methanogenic Archaea: Links to Disease Classification and Activity
inferred← citeshttps://doi.org/10.64898/2026.06.20.733556openalex-snapshot
Organic availability and microbial competition for acetate suppress methane emissions during the conversion of gypsum in sewage sludge
inferred← citeshttps://doi.org/10.70675/15498436ze1b5z47c9z8542z4b42e1219b52openalex-snapshot
Physiological and multi-omics studies of microbial sulfur metabolisms present in hydrothermal ecosystems
inferred← citeshttps://doi.org/10.70675/d601402ez0f37z44acza0eez63f8c6a2709copenalex-snapshot
Aspects physiologiques et écologiques des Methanomassiliicoccales dans des environnements terrestres et aquatiques
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