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Tick Microbiome Characterization by Next-Generation 16S rRNA Amplicon Sequencing

https://doi.org/10.3791/58239
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf01219108openalex-snapshot
A comparison of methods for sampling the deer tick,Ixodes dammini, in a Lyme disease endemic area
inferredcites →https://doi.org/10.1016/0890-8508(90)90003-iopenalex-snapshot
Taq polymerase contains bacterial DNA of unknown origin
inferredcites →https://doi.org/10.1016/j.chom.2013.12.001openalex-snapshot
Gut Microbiota of the Tick Vector Ixodes scapularis Modulate Colonization of the Lyme Disease Spirochete
inferredcites →https://doi.org/10.1016/j.meegid.2009.09.013openalex-snapshot
First isolation of Enterobacter, Enterococcus, and Acinetobacter spp. as inhabitants of the tsetse fly (Glossina palpalis palpalis) midgut
inferredcites →https://doi.org/10.1016/j.mimet.2004.11.018openalex-snapshot
Removal of contaminating DNA from commercial nucleic acid extraction kit reagents
inferredcites →https://doi.org/10.1016/j.pt.2015.03.010openalex-snapshot
Tick microbiome: the force within
inferredcites →https://doi.org/10.1016/s0378-1097(02)01190-4openalex-snapshot
Identification of mixed bacterial DNA contamination in broad-range PCR amplification of 16S rDNA V1 and V3 variable regions by pyrosequencing of cloned amplicons
inferredcites →https://doi.org/10.1038/ismej.2015.266openalex-snapshot
The bacterial microbiome of Dermacentor andersoni ticks influences pathogen susceptibility
inferredcites →https://doi.org/10.1038/ismej.2016.152openalex-snapshot
Tick microbiome and pathogen acquisition altered by host blood meal
inferredcites →https://doi.org/10.1038/nbt.2676openalex-snapshot
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
inferredcites →https://doi.org/10.1038/nmeth.2658openalex-snapshot
Differential abundance analysis for microbial marker-gene surveys
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/srep28792openalex-snapshot
The wMel strain of Wolbachia Reduces Transmission of Zika virus by Aedes aegypti
inferredcites →https://doi.org/10.1093/jmedent/12.3.389openalex-snapshot
Laboratory Rearing Procedures and Equipment for Multi.Host Ticks (Acarina: Ixodidae)1
inferredcites →https://doi.org/10.1093/nar/gkj157openalex-snapshot
GenBank
inferredcites →https://doi.org/10.1093/nar/gkm864openalex-snapshot
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
inferredcites →https://doi.org/10.1093/nar/gkn879openalex-snapshot
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
inferredcites →https://doi.org/10.1093/nar/gks808openalex-snapshot
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
inferredcites →https://doi.org/10.1111/j.1755-0998.2012.03140.xopenalex-snapshot
Identifying the last supper: utility of the DNA barcode library for bloodmeal identification in ticks
inferredcites →https://doi.org/10.1111/mec.14391openalex-snapshot
Vertical vs. horizontal transmission of the microbiome in a key disease vector, Ixodes pacificus
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.01562-15openalex-snapshot
Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1128/aem.63.10.3926-3932.1997openalex-snapshot
Endosymbionts of ticks and their relationship to Wolbachia spp. and tick-borne pathogens of humans and animals
inferredcites →https://doi.org/10.1128/jcm.01228-07openalex-snapshot
16S rRNA Gene Sequencing for Bacterial Identification in the Diagnostic Laboratory: Pluses, Perils, and Pitfalls
inferredcites →https://doi.org/10.1186/2049-2618-2-6openalex-snapshot
An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
inferredcites →https://doi.org/10.1186/s12864-017-3501-4openalex-snapshot
SILVA, RDP, Greengenes, NCBI and OTT — how do these taxonomies compare?
inferredcites →https://doi.org/10.1186/s12866-015-0475-8openalex-snapshot
Developmental succession of the microbiome of Culex mosquitoes
inferredcites →https://doi.org/10.1186/s12915-014-0087-zopenalex-snapshot
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
inferredcites →https://doi.org/10.1186/s13059-014-0564-2openalex-snapshot
Tracking down the sources of experimental contamination in microbiome studies
inferredcites →https://doi.org/10.1186/s13071-015-0958-3openalex-snapshot
Inhibition of the endosymbiont “Candidatus Midichloria mitochondrii” during 16S rRNA gene profiling reveals potential pathogens in Ixodes ticks from Australia
inferredcites →https://doi.org/10.1186/s40168-017-0237-yopenalex-snapshot
Normalization and microbial differential abundance strategies depend upon data characteristics
inferredcites →https://doi.org/10.1258/jrsm.95.2.81openalex-snapshot
Unculturable Bacteria—The Uncharacterized organisms that Cause Oral Infections
inferredcites →https://doi.org/10.1371/journal.pcbi.1000844openalex-snapshot
The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies
inferredcites →https://doi.org/10.1371/journal.pcbi.1003531openalex-snapshot
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
inferredcites →https://doi.org/10.1371/journal.ppat.1000423openalex-snapshot
Implication of the Mosquito Midgut Microbiota in the Defense against Malaria Parasites
inferredcites →https://doi.org/10.1385/1-59259-867-6:013openalex-snapshot
DNA Extraction and Quantitation of Forensic Samples Using the Phenol–Chloroform Method and Real-Time PCR
inferredcites →https://doi.org/10.2144/000114018openalex-snapshot
Chelex 100 as a Medium for Simple Extraction of DNA for PCR-Based Typing from Forensic Material
inferredcites →https://doi.org/10.2174/1874285801206010029openalex-snapshot
Characterization of the Relative Abundance of the Citrus Pathogen Ca. Liberibacter Asiaticus in the Microbiome of Its Insect Vector, Diaphorina citri, using High Throughput 16S rRNA Sequencing
inferredcites →https://doi.org/10.3201/eid0802.010141openalex-snapshot
Traditional and Molecular Techniques for the Study of Emerging Bacterial Diseases: One Laboratory’s Perspective
inferredcites →https://doi.org/10.3791/2565openalex-snapshot
NanoDrop Microvolume Quantitation of Nucleic Acids
inferredcites →https://doi.org/10.7717/peerj.1147openalex-snapshot
To beat or not to beat a tick: comparison of DNA extraction methods for ticks ( Ixodes scapularis )

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ijppaw.2024.100943zenodo-depositor-declared
Bacterial community of ticks (Acari: Ixodidae) and mammals from Arauca, Colombian Orinoquia
inferred← citeshttps://doi.org/10.3897/mbmg.7.109085zenodo-depositor-declared
Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia
inferred← citeshttps://doi.org/10.1002/ece3.71714openalex-snapshot
Host‐Specificity and Network Structure of Tick Microbiota in Co‐Distributed Species From the Iberian Peninsula
inferred← citeshttps://doi.org/10.1007/s00436-024-08311-0openalex-snapshot
Phenotypic and genotypic characterization of ticks and tick-borne pathogens from cattle in selected villages of Greater Letaba Municipality in Limpopo Province, South Africa
inferred← citeshttps://doi.org/10.1007/s10493-023-00799-yopenalex-snapshot
Characterization of bacterial communities in ticks parasitizing cattle in a touristic location in southwestern China
inferred← citeshttps://doi.org/10.1007/s11356-021-14520-2openalex-snapshot
Responses of soil microbial community to combination pollution of galaxolide and cadmium
inferred← citeshttps://doi.org/10.1016/j.crpvbd.2022.100088openalex-snapshot
Distribution and prevalence of ticks and tick-borne pathogens of wild animals in South Africa: A systematic review
inferred← citeshttps://doi.org/10.1016/j.heliyon.2020.e04542openalex-snapshot
Application of 16S rRNA next generation sequencing in ticks in Greece
inferred← citeshttps://doi.org/10.1016/j.pt.2021.04.004openalex-snapshot
Grappling with the tick microbiome
inferred← citeshttps://doi.org/10.1016/j.ttbdis.2019.101321openalex-snapshot
Microbiota assessment across different developmental stages of Dermacentor silvarum (Acari: Ixodidae) revealed stage-specific signatures
inferred← citeshttps://doi.org/10.1016/j.ttbdis.2021.101768openalex-snapshot
Metagenomic analysis of individually analyzed ticks from Eastern Europe demonstrates regional and sex-dependent differences in the microbiota of Ixodes ricinus
inferred← citeshttps://doi.org/10.1016/j.ttbdis.2025.102506openalex-snapshot
A full-length 16S survey using Nanopore sequencing to uncover the bacterial microbiome in Ixodes ricinus ticks from a single UK woodland, collected across three springs (2019-2021)
inferred← citeshttps://doi.org/10.1038/s41579-020-0400-5openalex-snapshot
Interactions between Borrelia burgdorferi and ticks
inferred← citeshttps://doi.org/10.1038/s41598-024-81313-1openalex-snapshot
Exploring the microbiomes of camel ticks to infer vector competence: insights from tissue-level symbiont-pathogen relationships
inferred← citeshttps://doi.org/10.1093/jme/tjaa013openalex-snapshot
Characterization of Microbial Communities in Ixodes persulcatus (Ixodida: Ixodidae), a Veterinary and Medical Important Tick Species in Northeastern China
inferred← citeshttps://doi.org/10.1101/2023.09.24.559238openalex-snapshot
Spotted fever group rickettsiae were the dominant pathogens in parasitic Rhipicephalus microplus in Yunnan Province, China
inferred← citeshttps://doi.org/10.1111/mve.12823openalex-snapshot
Metataxonomic profiles of bacterial and parasitic communities in Amblyomma spp. ticks collected from wildlife in Colombia: Implications for tick‐borne diseases
inferred← citeshttps://doi.org/10.1186/s12917-021-02969-9openalex-snapshot
Data analysis workflow for the detection of canine vector-borne pathogens using 16 S rRNA Next-Generation Sequencing
inferred← citeshttps://doi.org/10.1186/s13071-023-05864-4openalex-snapshot
Molecular detection of pathogens from ticks collected from dogs and cats at veterinary clinics in Finland
inferred← citeshttps://doi.org/10.1371/journal.pone.0268172openalex-snapshot
First insights into the microbiome of Tunisian Hyalomma ticks gained through next-generation sequencing with a special focus on H. scupense
inferred← citeshttps://doi.org/10.15212/zoonoses-2021-0007openalex-snapshot
Bacterial Microbiota in Unfed Ticks (Dermacentor nuttalli) From Xinjiang Detected Through 16S rDNA Amplicon Sequencing and Culturomics
inferred← citeshttps://doi.org/10.15212/zoonoses-2023-0040openalex-snapshot
Spotted Fever Group rickettsiae are the Dominant Pathogens in Parasitic Rhipicephalus microplus in Yunpan and Menghun, Xishuangbanna, Yunnan Province, China
inferred← citeshttps://doi.org/10.21203/rs.3.rs-5224940/v1openalex-snapshot
Exploring the microbiomes of camel ticks to infer vector competence: Insights from tissue level symbiont-pathogen relationships
inferred← citeshttps://doi.org/10.21775/9781913652616.11openalex-snapshot
Interactions Between Ticks and Lyme Disease Spirochetes
inferred← citeshttps://doi.org/10.21775/cimb.042.113openalex-snapshot
Interactions Between Ticks and Lyme Disease Spirochetes
inferred← citeshttps://doi.org/10.3390/ani15111572openalex-snapshot
Effects of Dietary Net Energy/Lysine Ratio and Sex on Growth Performance, Digestive Organ Development, and Cecal Microbiota of Broiler Chickens
inferred← citeshttps://doi.org/10.3390/biology9090275openalex-snapshot
General Microbiota of the Soft Tick Ornithodoros turicata Parasitizing the Bolson Tortoise (Gopherus flavomarginatus) in the Mapimi Biosphere Reserve, Mexico
inferred← citeshttps://doi.org/10.3390/insects10100353openalex-snapshot
Comparative Microbiome Profiles of Sympatric Tick Species from the Far-Western United States
inferred← citeshttps://doi.org/10.4236/aim.2022.122006openalex-snapshot
Bacteriome in Ticks Collected from Domestic Livestock in Kenya
inferred← citeshttps://doi.org/10.6035/14104.2019.183893openalex-snapshot
Àcars en cítrics: defensa de les plantes i interacció del microbioma
inferred← citeshttps://doi.org/10.6084/m9.figshare.26617180openalex-snapshot
Additional file 1 of Molecular detection of pathogens from ticks collected from dogs and cats at veterinary clinics in Finland
inferred← citeshttps://doi.org/10.7287/peerj.12067v0.1/reviews/1openalex-snapshot
Peer Review #1 of "The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12067v0.1/reviews/2openalex-snapshot
Peer Review #2 of "The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12067v0.2/reviews/1openalex-snapshot
Peer Review #1 of "The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.12067v0.2/reviews/3openalex-snapshot
Peer Review #3 of "The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.12067openalex-snapshot
The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya
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