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Molecular phylogenetics of the Gloeophyllales and relative ages of clades of Agaricomycotina producing a brown rot

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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PHYLIP ( PHYLogeny Inference Package)
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Use of atp6 in Fungal Phylogenetics: An Example from the Boletales
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Higher-Level Phylogenetic Relationships of Homobasidiomycetes (Mushroom-Forming Fungi) Inferred from Four rDNA Regions
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Molecular Evolution and Diversity of Lignin Degrading Heme Peroxidases in the Agaricomycetes
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The identification of fossil angiosperm pollen and its bearing on the time and place of the origin of angiosperms
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Taxonomical position of polypore Dichomitus albidofuscus:Donkioporia albidofusca comb. nov.
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Early evolution in the Pinaceae
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AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS
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Phanerozoic evolution of plants on the African plate
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A higher-level phylogenetic classification of the Fungi
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Re-thinking the classification of corticioid fungi
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Biogeographic analysis of Jurassic–Early Cretaceous wood assemblages from Gondwana
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Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory
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Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)
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Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)
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Neolentinus — a well-founded genus in Pleurotaceae that includes Heliocybe
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Molecular phylogeny of Melanospora and similar pyrenomycetous fungi
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The phylogenetic distribution of resupinate forms across the major clades of mushroom‐forming fungi (Homobasidiomycetes)
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Phylogenetic analysis of Antrodia and related taxa based on partial mitochondrial SSU rDNA sequences
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Origin and diversification of endomycorrhizal fungi and coincidence with vascular land plants
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Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny
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Estimating metazoan divergence times with a molecular clock
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Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
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Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins.
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Ainsworth and Bisbys Dictionary of the Fungi
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Notes on Taxonomy and Nomenclature of the Polypores
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The Mating System and Some Other Cultural Aspects of Veluticeps Berkeleyi
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Wood-Rotting Fungi of North America
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A phylogeny of the genus Agaricus based on mitochondrial atp 6 sequences
inferredcites →https://doi.org/10.1080/07352680802665297openalex-snapshot
Molecular Markers and Concepts of Plant Evolutionary Relationships: Progress, Promise, and Future Prospects
inferredcites →https://doi.org/10.1080/10635150121079openalex-snapshot
Analysis of Character Correlations Among Wood Decay Mechanisms, Mating Systems, and Substrate Ranges in Homobasidiomycetes
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Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests
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Phylogenetic Relationships of the Polyporaceae Based on Gene Sequences of Nuclear Small Subunit Ribosomal RNAs
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Cretaceous and Eocene Poroid Hymenophores from Vancouver Island, British Columbia
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Dating divergences in the Fungal Tree of Life: review and new analyses
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Evolutionary History of the Genus Pseudolarix Gordon (Pinaceae)
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Dating Lineages: Molecular and Paleontological Approaches to the Temporal Framework of Clades
inferredcites →https://doi.org/10.1086/590472openalex-snapshot
Use of Simultaneous Analyses to Guide Fossil‐Based Calibrations of Pinaceae Phylogeny
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MODELTEST: testing the model of DNA substitution.
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r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/bti263openalex-snapshot
ProtTest: selection of best-fit models of protein evolution
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/molbev/msi121openalex-snapshot
More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy
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MtArt: A New Model of Amino Acid Replacement for Arthropoda
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Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025658openalex-snapshot
Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026092openalex-snapshot
Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026104openalex-snapshot
An evaluation of elongation factor 1 alpha as a phylogenetic marker for eukaryotes
inferredcites →https://doi.org/10.1093/sysbio/49.2.278openalex-snapshot
Phylogenetic Relationships of Agaric Fungi Based on Nuclear Large Subunit Ribosomal DNA Sequences
inferredcites →https://doi.org/10.1098/rspb.2001.1782openalex-snapshot
Evolution of the angiosperms: calibrating the family tree
inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb01775.xopenalex-snapshot
THE AGE OF THE ANGIOSPERMS: A MOLECULAR TIMESCALE WITHOUT A CLOCK
inferredcites →https://doi.org/10.1111/j.1095-8339.2009.00971.xopenalex-snapshot
Comparative wood anatomy in Abietoideae (Pinaceae)
inferredcites →https://doi.org/10.1111/j.1365-294x.1993.tb00005.xopenalex-snapshot
ITS primers with enhanced specificity for basidiomycetes ‐ application to the identification of mycorrhizae and rusts
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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
inferredcites →https://doi.org/10.1111/j.1574-6976.2008.00106.xopenalex-snapshot
Degradation of cellulose by basidiomycetous fungi
inferredcites →https://doi.org/10.1128/aem.67.6.2705-2711.2001openalex-snapshot
Pathways for Extracellular Fenton Chemistry in the Brown Rot Basidiomycete Gloeophyllum trabeum
inferredcites →https://doi.org/10.1128/jb.172.8.4238-4246.1990openalex-snapshot
Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species
inferredcites →https://doi.org/10.1139/b93-131openalex-snapshot
Dating the evolutionary radiations of the true fungi
inferredcites →https://doi.org/10.1139/b95-331openalex-snapshot
Progress toward a phylogenetic classification of the Polyporaceae through parsimony analysis of mitochondrial ribosomal DNA sequences
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1186/1741-7007-7-13openalex-snapshot
The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses
inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot
Relaxed Phylogenetics and Dating with Confidence
inferredcites →https://doi.org/10.1554/04-565.1openalex-snapshot
ANGIOSPERM DIVERGENCE TIMES: THE EFFECT OF GENES, CODON POSITIONS, AND TIME CONSTRAINTS
inferredcites →https://doi.org/10.2307/1504694openalex-snapshot
Timber Decay in Buildings: The Conservation Approach to Treatment
inferredcites →https://doi.org/10.2307/2419417openalex-snapshot
Phylogenetic Relationships of Lentinus (Basidiomycotina) Inferred from Molecular and Morphological Characters
inferredcites →https://doi.org/10.2307/2446289openalex-snapshot
Fossil mushrooms from Miocene and Cretaceous ambers and the evolution of Homobasidiomycetes
inferredcites →https://doi.org/10.2307/3760053openalex-snapshot
Taxonomic Study of Veluticeps (Aphyllophorales)
inferredcites →https://doi.org/10.2307/3761557openalex-snapshot
Phylogenetic Analyses and the Distribution of Nematophagy Support a Monophyletic Pleurotaceae within the Polyphyletic Pleurotoid-Lentinoid Fungi
inferredcites →https://doi.org/10.2307/3761603openalex-snapshot
A Phylogeny of the Genus Agaricus Based on Mitochondrial atp6 Sequences
inferredcites →https://doi.org/10.2307/3761650openalex-snapshot
Evolutionary Relationships among Mucoralean Fungi (Zygomycota): Evidence for Family Polyphyly on a Large Scale
inferredcites →https://doi.org/10.2307/3762086openalex-snapshot
Phylogenetic Relationships of Sparassis Inferred from Nuclear and Mitochondrial Ribosomal DNA and RNA Polymerase Sequences
inferredcites →https://doi.org/10.2307/3807544openalex-snapshot
North American Polypores
inferredcites →https://doi.org/10.3732/ajb.91.10.1446openalex-snapshot
Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
inferredcites →https://doi.org/10.3852/07-124r2openalex-snapshot
Molecular phylogeny of Laetiporus and other brown rot polypore genera in North America
inferredcites →https://doi.org/10.3852/mycologia.97.1.269openalex-snapshot
Perithecial ascomycetes from the 400 million year old Rhynie chert: an example of ancestral polymorphism
inferredcites →https://doi.org/10.3852/mycologia.97.1.84openalex-snapshot
A Beauveria phylogeny inferred from nuclear ITS and EF1- sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs
inferredcites →https://doi.org/10.3852/mycologia.98.6.982openalex-snapshot
Major clades of Agaricales: a multilocus phylogenetic overview
inferredcites →https://doi.org/10.5962/p.416891openalex-snapshot
Columnocystis, a synonym of Veluticeps

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Veluticeps fasciculata sp. nov. (Gloeophyllaceae, Basidiomycota), a close relative to V. berkeleyi
inferred← citeshttps://doi.org/10.11646/phytotaxa.349.2.8zenodo-depositor-declared
Heliocybe villosa sp. nov., a new member to the genus Heliocybe (Gloeophyllales)
inferred← citeshttps://doi.org/10.11646/phytotaxa.514.3.8zenodo-depositor-declared
Two new combinations in the genus Panus (Panaceae, Polyporales) based on morphology and molecular phylogeny
inferred← citeshttps://doi.org/10.11646/phytotaxa.726.3.2zenodo-depositor-declared
Morphological characteristics and phylogenetic analyses reveal Purpureocorticium niveum sp. nov. (Agaricomycetes, Basidiomycota) from southern China
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Studies in phylogeny and divergence times of Irpicaceae and Meripilaceae (Polyporales, Basidiomycota), with an emphasis on Ceriporia and Meripilus including ten new species
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Phylogeny, divergence time and historical biogeography of Phanerochaete (Basidiomycota, Polyporales), with a description of two new species in Korea
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Taxonomy and phylogeny of Panus (Polyporales, Panaceae) in China and its relationship with allies
inferred← citeshttps://doi.org/10.1002/9780470015902.a0027655openalex-snapshot
Wood Decay Fungi
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Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five–marker dataset
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14 Agaricomycetes
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Polypore diversity in China with an annotated checklist of Chinese polypores
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Veluticeps microspora sp. nov. and V. ambigua new to Asia with a preliminary phylogenetic study on the genus
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Hispidaedalea gen. nov. and Griseoporia taiwanense sp. nov. (Gloeophyllales, Basidiomycota) based on morphological and molecular characters
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Transatlantic disjunction in fleshy fungi. II. The Sparassis spathulata – S. brevipes complex
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Taxonomy and multi-gene phylogeny of Haploporus (Polyporales, Basidiomycota)
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Crepatura ellipsospora gen. et sp. nov. in Phanerochaetaceae (Polyporales, Basidiomycota) bearing a tuberculate hymenial surface
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Molecular phylogeny of Trametes and related genera, and description of a new genus Leiotrametes
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Fragiliporiaceae, a new family of Polyporales (Basidiomycota)
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The ranking of fungi: a tribute to David L. Hawksworth on his 70th birthday
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Species diversity, taxonomy and phylogeny of Polyporaceae (Basidiomycota) in China
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Systematic classification and phylogenetic relationships of the brown-rot fungi within the Polyporales
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Characterization of the aap1 gene of Agaricus bisporus, a homolog of the yeast YAP1
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Multigene molecular phylogenetics reveals true morels (Morchella) are especially species-rich in China
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Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov.
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Fungal wood decomposer activities influence community structures of myxomycetes and bryophytes on coarse woody debris
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Functional guild classification predicts the enzymatic role of fungi in litter and soil biogeochemistry
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Large-scale phenotyping of 1,000 fungal strains for the degradation of non-natural, industrial compounds
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Lanostane Triterpenes from Gloeophyllum odoratum and Their Anti-Influenza Effects
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Comparative Analysis of Anticancer and Antibacterial Activities among Seven Trametes Species
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Comparison of ecological patterns of polypores in three forest zones in China
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Species diversity, taxonomy, multi-gene phylogeny, and divergence times of Meruliaceae (Polyporales, Basidiomycota)
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The complete mitochondrial genome of the Basidiomycete edible fungus Pleurotus eryngii
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The complete mitochondrial genome of the edible Basidiomycete mushroom Thelephora ganbajun
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The complete mitochondrial genome of the edible Basidiomycete mushroom Phlebopus Portentosus
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Three complete mitochondrial genomes of straw-rotting edible fungus Volvariella volvacea using next generation sequencing
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The complete mitochondrial genome of the Basidiomycete edible fungus Hypsizygus marmoreus
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Comprehensive taxon sampling reveals unaccounted diversity and morphological plasticity in a group of dimitic polypores (Polyporales, Basidiomycota)
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Biodiversity of Tricholoma matsutake (syn. T. nauseosum) and its related species based on repetitive DNA and genomics
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Gene make-up: rapid and massive intron gains after horizontal transfer of a bacterial α-amylase gene to Basidiomycetes
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Novel Root-Fungus Symbiosis in Ericaceae: Sheathed Ericoid Mycorrhiza Formed by a Hitherto Undescribed Basidiomycete with Affinities to Trechisporales
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Molecular survey of basidiomycetes and divergence time estimation: An Indian perspective
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An approach to the biogeography of polypore fungi (Agaricomycotina, Basidiomycota) in southern South America
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Polyporales and similar poroid genera (Basidiomycota) from Parque Estadual da Serra do Mar, São Paulo State, Brazil
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The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – Approaching one thousand genera
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Wood rotting polyporales from the biodiversity reserves within the Indian subtropical habitat
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The discovery of Neolentinus cirrhosus (Gloeophyllales, Basidiomycota) in the Neotropics
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Phylogenetic placement of Paratrichaptum and reconsideration of Gloeophyllales
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What are the 100 most cited fungal genera?
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Evolutionary Relationships Between the Laccase Genes of Polyporales: Orthology-Based Classification of Laccase Isozymes and Functional Insight From Trametes hirsuta
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Morphology and multigene phylogeny reveal a new order and a new species of wood-inhabiting basidiomycete fungi (Agaricomycetes)
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Taxonomy and phylogeny of brown-rot corticioid fungi in China: Coniophora beijingensis and Veluticeps subfasciculata spp. nov.
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Enhanced Lignocellulolytic Enzyme Activities on Hardwood and Softwood during Interspecific Interactions of White- and Brown-Rot Fungi
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Fungal Adaptation to the Advanced Stages of Wood Decomposition: Insights from the Steccherinum ochraceum
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Stipitate stereoid basidiocarps have evolved multiple times
inferred← citeshttps://doi.org/10.3852/12-088openalex-snapshot
The phylogenetic position of Postia s.l. (Polyporales, Basidiomycota) from Patagonia, Argentina
inferred← citeshttps://doi.org/10.3852/13-003openalex-snapshot
Phylogenetic and phylogenomic overview of the Polyporales
inferred← citeshttps://doi.org/10.3852/13-051openalex-snapshot
A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales)
inferred← citeshttps://doi.org/10.3852/14-170openalex-snapshot
The phylogenetic position of poroid Hymenochaetaceae (Hymenochaetales, Basidiomycota) from Patagonia, Argentina
inferred← citeshttps://doi.org/10.3897/mycokeys.32.23641openalex-snapshot
Taxonomy and phylogeny of Lopharia s.s., Dendrodontia, Dentocorticium and Fuscocerrena (Basidiomycota, Polyporales)
inferred← citeshttps://doi.org/10.47371/s10267-011-0134-3openalex-snapshot
Polypore diversity in China with an annotated checklist of Chinese polypores
inferred← citeshttps://doi.org/10.5248/123.31openalex-snapshot
Gloeophyllum protractum is synonymous with G. mexicanum
inferred← citeshttps://doi.org/10.5598/imafungus.2015.06.01.06openalex-snapshot
The lentinoid fungi (Lentinus and Panus) from Western Ghats, India
inferred← citeshttps://doi.org/10.5943/mycosphere/13/1/1openalex-snapshot
Taxonomy, phylogeny and divergence times of Polyporus (Basidiomycota) and related genera
inferred← citeshttps://doi.org/10.5943/mycosphere/13/1/3openalex-snapshot
Mycosphere notes 345–386
inferred← citeshttps://doi.org/10.5943/mycosphere/14/1/11openalex-snapshot
Updated systematics of Trichaptum s.l. (Hymenochaetales, Basidiomycota)
inferred← citeshttps://doi.org/10.5943/mycosphere/14/1/18openalex-snapshot
Global diversity, molecular phylogeny and divergence times of the brown‑rot fungi within the Polyporales
inferred← citeshttps://doi.org/10.5943/sif/6/1/27openalex-snapshot
Diversity of wood – decaying fungi in Haikou Forestry Farm, Yunnan Province, P.R. China
inferred← citeshttps://doi.org/10.7717/peerj.16470openalex-snapshot
Morphology and molecular phylogeny of Neolentinus in northern China
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