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Can metabarcoding resolve intraspecific genetic diversity changes to environmental stressors? A test case using river macrozoobenthos
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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From metabarcoding to metaphylogeography: separating the wheat from the chaff
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Incomplete estimates of genetic diversity within species: Implications for DNA barcoding
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The emerging role of genetic diversity for ecosystem functioning: Estuarine macrophytes as models
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Molecular systematics and phylogeography of the cryptic species complex Baetis rhodani (Ephemeroptera, Baetidae)
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Environmental DNA reveals that rivers are conveyer belts of biodiversity information
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DADA2: High-resolution sample inference from Illumina amplicon data
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The incomplete natural history of mitochondria
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Mitochondrial DNA reveals cryptic oligochaete species differing in cadmium resistance
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Biological identifications through DNA barcodes
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UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing
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Comparison of environmental DNA and bulk‐sample metabarcoding using highly degenerate cytochrome c oxidase I primers
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Assessing the influence of sample tagging and library preparation on DNA metabarcoding
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Long‐term studies of freshwater macroinvertebrates: a review of the frequency, duration and ecological significance
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Phylogeography of the montane caddisfly Drusus discolor: evidence for multiple refugia and periglacial survival
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Connections between species diversity and genetic diversity
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Ecological consequences of genetic diversity
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bold : The Barcode of Life Data System (http://www.barcodinglife.org)
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Changing organisms in rapidly changing anthropogenic landscapes: the significance of the ‘Umwelt’‐concept and functional habitat for animal conservation
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Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
inferredcites →https://doi.org/10.1111/mec.13660openalex-snapshot
Environmental DNA metabarcoding of lake fish communities reflects long‐term data from established survey methods
inferredcites →https://doi.org/10.1111/mec.15214openalex-snapshot
Mosquito control actions affect chironomid diversity in temporary wetlands of the Upper Rhine Valley
inferredcites →https://doi.org/10.1126/science.1122033openalex-snapshot
Population Size Does Not Influence Mitochondrial Genetic Diversity in Animals
inferredcites →https://doi.org/10.1126/science.abb2748openalex-snapshot
Post-2020 goals overlook genetic diversity
inferredcites →https://doi.org/10.1139/f99-285openalex-snapshot
Cryptic species diversity and evolution in the amphipod genus Hyalella within central glaciated North America: a molecular phylogenetic approach
inferredcites →https://doi.org/10.1146/annurev.en.41.010196.000555openalex-snapshot
The Role of Macroinvertebrates in Stream Ecosystem Function
inferredcites →https://doi.org/10.1186/s12302-018-0157-xopenalex-snapshot
DNA metabarcoding reveals the complex and hidden responses of chironomids to multiple stressors
inferredcites →https://doi.org/10.1186/s12862-016-0723-zopenalex-snapshot
Widely distributed and regionally isolated! Drivers of genetic structure in Gammarus fossarum in a human-impacted landscape
inferredcites →https://doi.org/10.1201/b11113-3openalex-snapshot
Analyzing intraspecific genetic variation
inferredcites →https://doi.org/10.1201/b11113-4openalex-snapshot
Detecting and measuring genetic differentiation
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Population genetic structure and ecotoxicology.
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Genetic Diversity Enhances Restoration Success by Augmenting Ecosystem Services
inferredcites →https://doi.org/10.1890/0012-9658(2006)87[1915:hltcat]2.0.co;2openalex-snapshot
HABITAT LOSS, TROPHIC COLLAPSE, AND THE DECLINE OF ECOSYSTEM SERVICES
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Response Diversity, Ecosystem Change, and Resilience
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Aquatic Invertebrates as Indicators of Stream Pollution
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R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fenvs.2017.00011openalex-snapshot
Validation and Development of COI Metabarcoding Primers for Freshwater Macroinvertebrate Bioassessment
inferredcites →https://doi.org/10.3390/genes10030192openalex-snapshot
Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?
inferredcites →https://doi.org/10.3897/mbmg.2.26744openalex-snapshot
The influence of macroinvertebrate abundance on the assessment of freshwater quality in The Netherlands
inferredcites →https://doi.org/10.3897/mbmg.4.53535openalex-snapshot
BOLDigger – a Python package to identify and organise sequences with the Barcode of Life Data systems
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Estimating intraspecific genetic diversity from community DNA metabarcoding data
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Swarm: robust and fast clustering method for amplicon-based studies
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← backgroundhttps://doi.org/10.3897/mbmg.4.51925.suppl1zenodo-depositor-declared
Supplementary material 1 from: Zizka VMA, Weiss M, Leese F (2020) Can metabarcoding resolve intraspecific genetic diversity changes to environmental stressors? A test case using river macrozoobenthos. Metabarcoding and Metagenomics 4: e51925. https://doi.org/10.3897/mbmg.4.51925
inferred← backgroundhttps://doi.org/10.3897/mbmg.4.51925.suppl2zenodo-depositor-declared
Supplementary material 2 from: Zizka VMA, Weiss M, Leese F (2020) Can metabarcoding resolve intraspecific genetic diversity changes to environmental stressors? A test case using river macrozoobenthos. Metabarcoding and Metagenomics 4: e51925. https://doi.org/10.3897/mbmg.4.51925
inferred← backgroundhttps://doi.org/10.3897/mbmg.4.51925.suppl5zenodo-depositor-declared
Supplementary material 5 from: Zizka VMA, Weiss M, Leese F (2020) Can metabarcoding resolve intraspecific genetic diversity changes to environmental stressors? A test case using river macrozoobenthos. Metabarcoding and Metagenomics 4: e51925. https://doi.org/10.3897/mbmg.4.51925
inferred← backgroundhttps://doi.org/10.3897/mbmg.4.51925.suppl6zenodo-depositor-declared
Supplementary material 6 from: Zizka VMA, Weiss M, Leese F (2020) Can metabarcoding resolve intraspecific genetic diversity changes to environmental stressors? A test case using river macrozoobenthos. Metabarcoding and Metagenomics 4: e51925. https://doi.org/10.3897/mbmg.4.51925
inferred← backgroundhttps://doi.org/10.3897/mbmg.4.51925.suppl8zenodo-depositor-declared
Supplementary material 8 from: Zizka VMA, Weiss M, Leese F (2020) Can metabarcoding resolve intraspecific genetic diversity changes to environmental stressors? A test case using river macrozoobenthos. Metabarcoding and Metagenomics 4: e51925. https://doi.org/10.3897/mbmg.4.51925
inferred← citeshttps://doi.org/10.1002/aqc.70324openalex-snapshot
River Connectivity in Dammed Areas Studied Through Environmental DNA Metabarcoding at Community and Species Levels
inferred← citeshttps://doi.org/10.1002/ece3.70575openalex-snapshot
Strong Small‐Scale Differentiation but No Cryptic Species Within the Two Isopod Species Asellus aquaticus and Proasellus coxalis in a Restored Urban River System (Emscher, Germany)
inferred← citeshttps://doi.org/10.1002/edn3.193openalex-snapshot
Seasonal turnover in community composition of stream‐associated macroinvertebrates inferred from freshwater environmental DNA metabarcoding
inferred← citeshttps://doi.org/10.1007/s10750-021-04718-3openalex-snapshot
Fresh insights into Mediterranean biodiversity: environmental DNA reveals spatio-temporal patterns of stream invertebrate communities on Sicily
inferred← citeshttps://doi.org/10.1016/j.ecolind.2022.108761openalex-snapshot
Suitability of molecular taxonomy for assessing polluted sediments using the NemaSPEAR[%] index
inferred← citeshttps://doi.org/10.1016/j.envpol.2024.125490openalex-snapshot
Effects of Bti on the diversity and community composition of three Chironomidae subfamilies across different micro-habitats
inferred← citeshttps://doi.org/10.1016/j.jcz.2025.09.003openalex-snapshot
DNA barcoding of fish from Singkil peat swamp waters of Aceh Province, Indonesia
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2023.115430openalex-snapshot
Environmental DNA metabarcoding serves as a promising method for aquatic species monitoring and management: A review focused on its workflow, applications, challenges and prospects
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2021.149029openalex-snapshot
DNA metabarcoding reveals differences in distribution patterns and ecological preferences among genetic variants within some key freshwater diatom species
inferred← citeshttps://doi.org/10.1016/j.tree.2022.06.001openalex-snapshot
Emerging technologies revolutionise insect ecology and monitoring
inferred← citeshttps://doi.org/10.1080/24750263.2023.2197924openalex-snapshot
Dissecting biodiversity: assessing the taxonomic, functional and phylogenetic structure of an insect metacommunity in a river network using morphological and metabarcoding data
inferred← citeshttps://doi.org/10.1101/2021.01.08.425760openalex-snapshot
To denoise or to cluster? That is not the question. Optimizing pipelines for COI metabarcoding and metaphylogeography
inferred← citeshttps://doi.org/10.1111/1755-0998.13384openalex-snapshot
Debar: A sequence‐by‐sequence denoiser for COI‐5P DNA barcode data
inferred← citeshttps://doi.org/10.1111/1755-0998.70023openalex-snapshot
gmmDenoise : A New Method and R Package for High‐Confidence Sequence Variant Filtering in Environmental DNA Amplicon Analysis
inferred← citeshttps://doi.org/10.1111/ddi.70121openalex-snapshot
Advancing Marine Conservation: Metabarcoding and Metaphylogeography for a Multi‐Year Biomonitoring of Benthic Communities of National Parks Across Two Seas
inferred← citeshttps://doi.org/10.1111/ecog.05557openalex-snapshot
Existing approaches and future directions to link macroecology, macroevolution and conservation prioritization
inferred← citeshttps://doi.org/10.1111/een.13393openalex-snapshot
Lessons from long‐term research: Diptera species turnover and dominance shifts with respect to climate‐driven changes
inferred← citeshttps://doi.org/10.1111/icad.12843openalex-snapshot
Towards DNA metabarcoding‐based haplotype for monitoring terrestrial arthropod communities
inferred← citeshttps://doi.org/10.1111/jbi.14548openalex-snapshot
Metabarcoding reveals high‐resolution biogeographical and metaphylogeographical patterns through marine barriers
inferred← citeshttps://doi.org/10.1111/mec.15811openalex-snapshot
Estimating the genetic diversity of Pacific salmon and trout using multigene eDNA metabarcoding
inferred← citeshttps://doi.org/10.1111/mec.15851openalex-snapshot
Testing small‐scale ecological gradients and intraspecific differentiation for hundreds of kelp forest species using haplotypes from metabarcoding
inferred← citeshttps://doi.org/10.1111/mec.16275openalex-snapshot
Community metabarcoding reveals the relative role of environmental filtering and spatial processes in metacommunity dynamics of soil microarthropods across a mosaic of montane forests
inferred← citeshttps://doi.org/10.1111/mec.16460openalex-snapshot
Best practices in metabarcoding of fungi: From experimental design to results
inferred← citeshttps://doi.org/10.1186/s12302-022-00618-yopenalex-snapshot
Long-term archival of environmental samples empowers biodiversity monitoring and ecological research
inferred← citeshttps://doi.org/10.1186/s12859-021-04115-6openalex-snapshot
To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography
inferred← citeshttps://doi.org/10.1186/s12915-025-02284-xopenalex-snapshot
Biomonitoring 2.0 Refined: observing local change through metaphylogeography using a community-based eDNA metabarcoding monitoring network
inferred← citeshttps://doi.org/10.1371/journal.pone.0289056openalex-snapshot
Haplotype-level metabarcoding of freshwater macroinvertebrate species: A prospective tool for population genetic analysis
inferred← citeshttps://doi.org/10.18502/kls.v8i1.15543openalex-snapshot
Structure and Dominance of Macrozoobenthos as Biomonitoring Instrument in the Reuleng River, Leupung, Aceh Besar, Indonesia
inferred← citeshttps://doi.org/10.22541/au.162501879.93982613/v1openalex-snapshot
Community metabarcoding reveals the relative role of environmental filtering and dispersal in metacommunity dynamics of soil microarthropods across a mosaic of montane forests
inferred← citeshttps://doi.org/10.22541/au.162501879.93982613/v2openalex-snapshot
Community metabarcoding reveals the relative role of environmental filtering and dispersal in metacommunity dynamics of soil microarthropods across a mosaic of montane forests
inferred← citeshttps://doi.org/10.3389/fevo.2024.1360714openalex-snapshot
Developing a DNA metabarcoding method to identify diet taxa in Neotropical foxes
inferred← citeshttps://doi.org/10.3390/w17081109openalex-snapshot
Application of eDNA Metabarcoding Technology to Monitor the Health of Aquatic Ecosystems
inferred← citeshttps://doi.org/10.3897/mbmg.4.51433openalex-snapshot
Exploring the potential of metabarcoding to disentangle macroinvertebrate community dynamics in intermittent streams
inferred← citeshttps://doi.org/10.7287/peerj.12758v0.1/reviews/1openalex-snapshot
Peer Review #1 of "DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12758v0.1/reviews/2openalex-snapshot
Peer Review #2 of "DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12758v0.2/reviews/1openalex-snapshot
Peer Review #1 of "DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.12758v0.2/reviews/2openalex-snapshot
Peer Review #2 of "DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.12758openalex-snapshot
DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets
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