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Monitoring harmful microalgal species and their appearance in Tokyo Bay, Japan, using metabarcoding

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Long‐term variability of nutrient and dissolved organic matter concentrations in Tokyo Bay between 1989 and 2015
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Numerical Experiments on Stratified Wind-induced Circulation in Tokyo Bay, Japan
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Circulation Processes in Tokyo Bay
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Mining of Knowledge Related to Factors Involved in the Aberrant Growth of Plankton
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Killing of marine phytoplankton by a gliding bacterium Cytophaga sp., isolated from the coastal sea of Japan
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Autecology and clonal variability of the marine centric diatom Thalassiosira rotula (Bacillariophyceae) in response to light, temperature and salinity
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Seasonal variation of residual current in Tokyo Bay, Japan —diagnostic numerical experiments—
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Seawater environmental DNA reflects seasonality of a coastal fish community
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Co-occurrence Networks Among Bacteria and Microbial Eukaryotes of Lake Baikal During a Spring Phytoplankton Bloom
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Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding
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Isolation, identification, and algicidal activity of marine bacteria against Cochlodinium polykrikoides
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Thalassiosira mala (Bacillariophyta), a potentially harmful, marine diatom from Chilka Lake and other coastal localities of Odisha, India: Nomenclature, frustule morphology and global biogeography
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Co-occurrence patterns between phytoplankton and bacterioplankton across the pelagic zone of Lake Baikal during spring
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First observation of Karlodinium veneficum from the East China Sea and the coastal waters of Germany
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Chattonella and Fibrocapsa (Raphidophyceae): First observation of, potentially harmful, red tide organisms in Dutch coastal waters
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Dinoflagellates
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Mixing observations at a constricted channel of a semi-closed estuary: Tokyo Bay
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Molecular diversity patterns among various phytoplankton size-fractions in West Greenland in late summer
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Environmental control of short-term variation in the plankton community of inner Tokyo Bay, Japan
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Environmental controls on phytoplankton production in coastal ecosystems: A case study from Tokyo Bay
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Holistic pelagic biodiversity monitoring of the Black Sea via eDNA metabarcoding approach: From bacteria to marine mammals
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Massively parallel sequencing-based survey of eukaryotic community structures in Hiroshima Bay and Ishigaki Island
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Potentially toxic and harmful microalgae from coastal waters of the Campania region (Tyrrhenian Sea, Mediterranean Sea)
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The globally distributed genus Alexandrium: Multifaceted roles in marine ecosystems and impacts on human health
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Harmful dinoflagellate blooms caused by Cochlodinium sp.: Global expansion and ecological strategies facilitating bloom formation
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Emergence of brown tides caused by Aureococcus anophagefferens Hargraves et Sieburth in China
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Monitoring and trends in harmful algal blooms and red tides in Korean coastal waters, with emphasis on Cochlodinium polykrikoides
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Termination of a toxic Alexandrium bloom with hydrogen peroxide
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Algicidal and growth-inhibiting bacteria associated with seagrass and macroalgae beds in Puget Sound, WA, USA
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Adding new pieces to the Azadinium (Dinophyceae) diversity and biogeography puzzle: Non-toxigenic Azadinium zhuanum sp. nov. from China, toxigenic A. poporum from the Mediterranean, and a non-toxigenic A. dalianense from the French Atlantic
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Identification of unique microbiomes associated with harmful algal blooms caused by Alexandrium fundyense and Dinophysis acuminata
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Applicability of massively parallel sequencing on monitoring harmful algae at Varna Bay in the Black Sea
inferredcites →https://doi.org/10.1016/j.hal.2018.04.007openalex-snapshot
Development of a qPCR assay to detect and quantify ichthyotoxic flagellates along the Norwegian coast, and the first Norwegian record of Fibrocapsa japonica (Raphidophyceae)
inferredcites →https://doi.org/10.1016/j.hal.2018.06.001openalex-snapshot
Pseudo-nitzschia, Nitzschia, and domoic acid: New research since 2011
inferredcites →https://doi.org/10.1016/j.hal.2018.09.003openalex-snapshot
Isolation of an algicidal bacterium and its effects against the harmful-algal- bloom dinoflagellate Prorocentrum donghaiense (Dinophyceae)
inferredcites →https://doi.org/10.1016/j.hal.2018.12.004openalex-snapshot
Dynamics of seagrass bed microbial communities in artificial Chattonella blooms: A laboratory microcosm study
inferredcites →https://doi.org/10.1016/j.hal.2019.101631openalex-snapshot
Toxic HAB species from the Sea of Okhotsk detected by a metagenetic approach, seasonality and environmental drivers
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Monitoring of the toxic dinoflagellate Alexandrium catenella in Osaka Bay, Japan using a massively parallel sequencing (MPS)-based technique
inferredcites →https://doi.org/10.1016/j.hal.2020.101772openalex-snapshot
Metabarcoding analysis of harmful algal species in Jiaozhou Bay
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Models of harmful algal blooms: Conceptual, empirical, and numerical approaches
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Ecological forecasting in Chesapeake Bay: Using a mechanistic–empirical modeling approach
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Study of DNA extraction methods for use in loop-mediated isothermal amplification detection of single resting cysts in the toxic dinoflagellates Alexandrium tamarense and A. catenella
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Diversity and activity of marine bacterioplankton during a diatom bloom in the North Sea assessed by total RNA and pyrotag sequencing
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Effects of hypoxia on benthic organisms in Tokyo Bay, Japan: A review
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Approaches to monitoring, control and management of harmful algal blooms (HABs)
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Tsushima Warm Current paths in the southwestern part of the Japan Sea
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Formal Revision of the Alexandrium tamarense Species Complex (Dinophyceae) Taxonomy: The Introduction of Five Species with Emphasis on Molecular-based (rDNA) Classification
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Protist Interactions and Community Structure During Early Autumn in the Kerguelen Region (Southern Ocean)
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Diverse algicidal bacteria associated with harmful bloom-forming Karenia mikimotoi in estuarine soil and seawater
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Profiling physicochemical and planktonic features from discretely/continuously sampled surface water
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Next Generation Sequencing and mass spectrometry reveal high taxonomic diversity and complex phytoplankton-phycotoxins patterns in Southeastern Pacific fjords
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The growth and cyst formation of a toxic dinoflagellate, Alexandrium tamarense, at low water temperatures in northeastern Japan
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A Theory of Gradient Analysis
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Marine harmful algal blooms, human health and wellbeing: challenges and opportunities in the 21st century
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Pyramimonas australis sp. nov. (Prasinophyceae, Chlorophyta) from Antarctica: fine structure and molecular phylogeny
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Evaluation of a Semipolar Solvent System as a Step toward Heteronuclear Multidimensional NMR-Based Metabolomics for 13C-Labeled Bacteria, Plants, and Animals
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Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
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Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
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Master recyclers: features and functions of bacteria associated with phytoplankton blooms
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Short-term dynamics and interactions of marine protist communities during the spring–summer transition
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Environmental DNA reveals seasonal shifts and potential interactions in a marine community
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Elucidation of the bacterial communities associated with the harmful microalgae Alexandrium tamarense and Cochlodinium polykrikoides using nanopore sequencing
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The water depth-dependent co-occurrence patterns of marine bacteria in shallow and dynamic Southern Coast, Korea
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Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China
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The seasonal occurrence of Alexandrium tamarense (Dinophyceae) vegetative cells in Hiroshima Bay, Japan
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Identification of potentially toxic Pseudo‐nitzschia (Bacillariophyceae) in New Zealand coastal waters, using lectins
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Assessment of the metabarcoding approach for community analysis of benthic‐epiphytic dinoflagellates using mock communities
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Biodiversity of phytoplankton cyst assemblages in surface sediments of the Black Sea based on metabarcoding
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UCHIME improves sensitivity and speed of chimera detection
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Strategies and ecological roles of algicidal bacteria
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Fluorometric Determination of Chlorophyll
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Long-term hydrological and phytoplankton monitoring (1992–2007) of three potentially eutrophic systems in the eastern English Channel and the Southern Bight of the North Sea
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A toxic dinoflagellate bloom of Alexandrium tamarense (Lebour) Balech in Tokyo Bay
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Effects of temperature and salinity on the growth of the red tide flagellates Heterocapsa circularisquama (Dinophyceae) and Chattonella verruculosa (Raphidophyceae)
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Modern dinoflagellate cysts in hypertrophic coastal waters of Tokyo Bay, Japan
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Development of specific rRNA probes to distinguish between geographic clades of the Alexandrium tamarense species complex
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Conventional sampling methods severely underestimate phytoplankton species richness
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Interactions between specific phytoplankton and bacteria affect lake bacterial community succession
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DNA metabarcoding of unfractionated water samples relates phyto‐, zoo‐ and bacterioplankton dynamics and reveals a single‐taxon bacterial bloom
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Detection and quantification of Prymnesium parvum (Haptophyceae) by real-time PCR
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Algicidal Bacteria in the Sea and their Impact on Algal Blooms1
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Morphology, Ultrastructure, and Small Subunit rDNA Phylogeny of the Marine Heterotrophic Flagellate Goniomonas aff. amphinema
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Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
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Haptophyte Diversity and Vertical Distribution Explored by 18S and 28S Ribosomal RNA Gene Metabarcoding and Scanning Electron Microscopy
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Protist Diversity and Seasonal Dynamics in Skagerrak Plankton Communities as Revealed by Metabarcoding and Microscopy
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Environmental Optima for Seven Strains of Pseudochattonella (Dictyochophyceae, Heterokonta)
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Three novel species in the P seudo‐nitzschia pseudodelicatissima complex: P . batesiana sp. nov., P . lundholmiae sp. nov., and P . fukuyoi sp. nov. ( B acillariophyceae) from the S trait of M alacca, M alaysia
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Genetic structure of J apanese C hattonella marina ( R aphidophyceae) populations revealed using microsatellite markers
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Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom
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Determinants of community structure in the global plankton interactome
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Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components
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A Novel Immunofluorescence Flow Cytometry Technique Detects the Expansion of Brown Tides Caused by Aureoumbra lagunensis to the Caribbean Sea
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The Algicidal Bacterium Kordia algicida Shapes a Natural Plankton Community
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Algicidal Effects of a Novel Marine Pseudoalteromonas Isolate (Class Proteobacteria , Gamma Subdivision) on Harmful Algal Bloom Species of the Genera Chattonella , Gymnodinium , and Heterosigma
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Dynamics of Bacterial Community Composition and Activity during a Mesocosm Diatom Bloom
inferredcites →https://doi.org/10.1134/s1063074013020090openalex-snapshot
The seasonal dynamics of potentially toxic and harmful phytoplankton species in Novorossiysk Bay (Black Sea)
inferredcites →https://doi.org/10.1145/170036.170072openalex-snapshot
Mining association rules between sets of items in large databases
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Progress in Understanding Harmful Algal Blooms: Paradigm Shifts and New Technologies for Research, Monitoring, and Management
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Observed Sea Surface Temperature of Tokyo Bay and Its Impact on Urban Air Temperature
inferredcites →https://doi.org/10.1264/jsme2.14.253openalex-snapshot
Possibility for bio-control of harmful diatom blooms in Coscinodiscus wailesii by marine bacteria.
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Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events
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Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
inferredcites →https://doi.org/10.1371/journal.pone.0053516openalex-snapshot
Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach
inferredcites →https://doi.org/10.1371/journal.pone.0106510openalex-snapshot
Use of High Throughput Sequencing and Light Microscopy Show Contrasting Results in a Study of Phytoplankton Occurrence in a Freshwater Environment
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Biogeochemical Typing of Paddy Field by a Data-Driven Approach Revealing Sub-Systems within a Complex Environment - A Pipeline to Filtrate, Organize and Frame Massive Dataset from Multi-Omics Analyses
inferredcites →https://doi.org/10.1371/journal.pone.0163977openalex-snapshot
Initiation and Development of a Toxic and Persistent Pseudo-nitzschia Bloom off the Oregon Coast in Spring/Summer 2015
inferredcites →https://doi.org/10.1371/journal.pone.0175186openalex-snapshot
Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary
inferredcites →https://doi.org/10.1371/journal.pone.0223067openalex-snapshot
Prokaryotic and eukaryotic microbiomes associated with blooms of the ichthyotoxic dinoflagellate Cochlodinium (Margalefidinium) polykrikoides in New York, USA, estuaries
inferredcites →https://doi.org/10.14934/chikyukagaku.17.16openalex-snapshot
東京湾の海洋環境 –海水循環と環境要因の概観– (総説)
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Isolate-specific resistance to the algicidal bacterium Kordia algicida in the diatom Chaetoceros genus
inferredcites →https://doi.org/10.2208/kaigan.65.1171openalex-snapshot
Sediment Transports and Qualities of Sediment in Rivers Flowing into Tokyo Bay
inferredcites →https://doi.org/10.2208/prohe.48.1243openalex-snapshot
Residence time of sea water in Tokyo Bay at 2002 and reproducing residence time with multi-box vertical one dimensional model
inferredcites →https://doi.org/10.2216/i0031-8884-36-5-381.1openalex-snapshot
Studies on the marine planktonic diatom Pseudo-nitzschia. 2. Autecology of P. pseudodelicatissima based on isolates from Danish coastal waters
inferredcites →https://doi.org/10.2216/i0031-8884-40-3-298.1openalex-snapshot
First record of blooms of Cochlodinium sp. (Gymnodiniales, Dinophyceae) causing mortality to aquacultured salmon on the west coast of Canada
inferredcites →https://doi.org/10.22452/mjs.vol35no2.15openalex-snapshot
FIRST REPORT OF A MARINE DINOFLAGELLATE, ALEXANDRIUM ANDERSONII (DINOPHYACEAE) IN MALAYSIAN WATERS
inferredcites →https://doi.org/10.2331/fishsci.61.628openalex-snapshot
Algicidal Marine Bacteria Isolated from Northern Hiroshima Bay, Japan
inferredcites →https://doi.org/10.2331/fishsci.62.878openalex-snapshot
First Record of a Bloom of Thalassiosira diporocyclus in the Eastern Seto Inland Sea
inferredcites →https://doi.org/10.2331/suisan.16-00033openalex-snapshot
First record of red tide due to the harmful dinoflagellate Karenia mikimotoi in Hakodate Bay, southern Hokkaido, in autumn 2015
inferredcites →https://doi.org/10.2331/suisan.72.1068openalex-snapshot
Occurrence and toxin production of Alexandrium spp. (Dinophyceae) in coastal waters of Iwate Prefecture, Japan
inferredcites →https://doi.org/10.2788/660478openalex-snapshot
Algal bloom and its economic impact
inferredcites →https://doi.org/10.3354/ame01868openalex-snapshot
Shifts in phytoplankton community structure modify bacterial production, abundance and community composition
inferredcites →https://doi.org/10.3354/meps033193openalex-snapshot
Time-lag algal growth dynamics: biological constraints on primary production in aquatic environments
inferredcites →https://doi.org/10.3354/meps11014openalex-snapshot
Novel blooms of the diatom Asteroplanus karianus deplete nutrients from Ariake Sea coastal waters
inferredcites →https://doi.org/10.3354/meps244001openalex-snapshot
Algicidal bacteria associated with blooms of a toxic dinoflagellate in a temperate Australian estuary
inferredcites →https://doi.org/10.3389/fcosc.2022.820377openalex-snapshot
Using Environmental DNA to Detect Whales and Dolphins in the New York Bight
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Resource Competition Affects Plankton Community Structure; Evidence from Trait-Based Modeling
inferredcites →https://doi.org/10.3389/fmars.2017.00379openalex-snapshot
Cryptic Zooplankton Diversity Revealed by a Metagenetic Approach to Monitoring Metazoan Communities in the Coastal Waters of the Okhotsk Sea, Northeastern Hokkaido
inferredcites →https://doi.org/10.3389/fmars.2019.00085openalex-snapshot
Massive Blooms of Chattonella subsalsa Biecheler (Raphidophyceae) in a Hypereutrophic, Tropical Estuary—Guanabara Bay, Brazil
inferredcites →https://doi.org/10.3389/fmars.2019.00161openalex-snapshot
Australia’s Long-Term Plankton Observations: The Integrated Marine Observing System National Reference Station Network
inferredcites →https://doi.org/10.3389/fmicb.2016.00517openalex-snapshot
Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom
inferredcites →https://doi.org/10.3389/fmicb.2016.01433openalex-snapshot
Phytoplankton-Associated Bacterial Community Composition and Succession during Toxic Diatom Bloom and Non-Bloom Events
inferredcites →https://doi.org/10.3389/fmicb.2018.01201openalex-snapshot
Microbial Community Structure and Associations During a Marine Dinoflagellate Bloom
inferredcites →https://doi.org/10.3389/fmicb.2018.03296openalex-snapshot
High Frequency Multi-Year Variability in Baltic Sea Microbial Plankton Stocks and Activities
inferredcites →https://doi.org/10.3389/fmicb.2020.01016openalex-snapshot
The Composition and Function of Microbiomes Within Microcystis Colonies Are Significantly Different Than Native Bacterial Assemblages in Two North American Lakes
inferredcites →https://doi.org/10.3390/app10165658openalex-snapshot
Distribution of Harmful Algal Growth-Limiting Bacteria on Artificially Introduced Ulva and Natural Macroalgal Beds
inferredcites →https://doi.org/10.3390/ijerph17207642openalex-snapshot
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile
inferredcites →https://doi.org/10.3390/jmse7090314openalex-snapshot
An Integrated Web-Based System for the Monitoring and Forecasting of Coastal Harmful Algae Blooms: Application to Shenzhen City, China
inferredcites →https://doi.org/10.3390/toxins11120712openalex-snapshot
Physiological Effects on Coexisting Microalgae of the Allelochemicals Produced by the Bloom-Forming Cyanobacteria Synechococcus sp. and Nodularia Spumigena
inferredcites →https://doi.org/10.3800/pbr.1.147openalex-snapshot
Distribution and Abundance of resting cysts of Alexandrium tamarense and/or A. catenella (Dinophyceae) in Tokyo Bay, Japan
inferredcites →https://doi.org/10.3800/pbr.1.71openalex-snapshot
Eutrophication and occurrences of harmful algal blooms in the Seto Inland Sea, Japan
inferredcites →https://doi.org/10.3800/pbr.12.248openalex-snapshot
An attempt to semi-quantify potentially toxic diatoms of the genus Pseudo-nitzschia in Tokyo Bay, Japan by using massively parallel sequencing technology
inferredcites →https://doi.org/10.3800/pbr.3.165openalex-snapshot
Field and laboratory observations on the hypoxic impact on survival and distribution of short-necked clam Ruditapes philippinarum larvae in Tokyo Bay, central Japan
inferredcites →https://doi.org/10.3800/pbr.6.26openalex-snapshot
Long time-series observations in population dynamics of the harmful diatom Eucampia zodiacus and environmental factors in Harima-Nada, eastern Seto Inland Sea, Japan during 1974^|^ndash;2008
inferredcites →https://doi.org/10.3897/mbmg.2.25136openalex-snapshot
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inferredcites →https://doi.org/10.3897/mbmg.5.72371openalex-snapshot
Plankton biodiversity and species co-occurrence based on environmental DNA – a multiple marker study
inferredcites →https://doi.org/10.5928/kaiyou.7.159openalex-snapshot
Changes in Red Tide Events and Phytoplankton Community Composition in Tokyo Bay from the Historical Plankton Records in a Period between 1907 and 1997.
inferredcites →https://doi.org/10.5928/kaiyou1942.12.63openalex-snapshot
Harmful Blooming of Minute Cells of Thalassiosira decipiens in Coastal Water in Tokyo Bay

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← backgroundhttps://doi.org/10.3897/mbmg.6.79471.suppl1zenodo-depositor-declared
Supplementary material 1 from: Sildever S, Nishi N, Inaba N, Asakura T, Kikuchi J, Asano Y, Kobayashi T, Gojobori T, Nagai S (2022) Monitoring harmful microalgal species and their appearance in Tokyo Bay, Japan, using metabarcoding. Metabarcoding and Metagenomics 6: e79471.…
inferred← backgroundhttps://doi.org/10.3897/mbmg.6.79471.suppl2zenodo-depositor-declared
Supplementary material 2 from: Sildever S, Nishi N, Inaba N, Asakura T, Kikuchi J, Asano Y, Kobayashi T, Gojobori T, Nagai S (2022) Monitoring harmful microalgal species and their appearance in Tokyo Bay, Japan, using metabarcoding. Metabarcoding and Metagenomics 6: e79471.…
inferred← citeshttps://doi.org/10.1002/edn3.452openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.hal.2023.102496openalex-snapshot
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inferred← citeshttps://doi.org/10.2139/ssrn.5554486openalex-snapshot
A four-year DNA metabarcoding revealed the ecological importance of phototrophic nanoflagellates in highly eutrophic Tokyo Bay, Japan
inferred← citeshttps://doi.org/10.3390/microorganisms13122746openalex-snapshot
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inferred← citeshttps://doi.org/10.64898/2026.05.05.722998openalex-snapshot
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