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Computational Methods for Taxonomic Annotation and Genome Reconstruction in Metagenomics

https://doi.org/10.5281/zenodo.1263099
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.chom.2015.01.011zenodo-depositor-declared
Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
inferredcites →https://doi.org/10.1038/nmeth.4458zenodo-depositor-declared
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
inferredcites →https://doi.org/10.1093/bib/bbs031zenodo-depositor-declared
Taxonomic binning of metagenome samples generated by next-generation sequencing technologies
inferredcites →https://doi.org/10.1093/bioinformatics/btu745zenodo-depositor-declared
Taxator-tk: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods
inferredcites →https://doi.org/10.1093/femsec/fiw254zenodo-depositor-declared
Reconstructing metabolic pathways of a member of the genus Pelotomaculum suggesting its potential to oxidize benzene to carbon dioxide with direct reduction of sulfate
inferredcites →https://doi.org/10.1186/s13742-015-0087-0zenodo-depositor-declared
Bioboxes: standardised containers for interchangeable bioinformatics software
inferredcites →https://doi.org/10.7717/peerj-cs.117zenodo-depositor-declared
A probabilistic model to recover individual genomes from metagenomes
inferredcites →https://doi.org/10.7717/peerj.1603zenodo-depositor-declared
PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes
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