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Genomics-Assisted Plant Breeding in the 21st Century: Technological Advances and Progress
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Plant Breeding: Past, Present, and Future
inferredcites →https://doi.org/10.1002/9780470958964openalex-snapshot
Next Generation Sequencing and Whole Genome Selection in Aquaculture
inferredcites →https://doi.org/10.1002/9780470958964.ch6openalex-snapshot
SNP Discovery through EST Data Mining
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Genetic association mapping at the crossroads: Which test and why? Overview and practical guidelines
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Whole genome genotyping technologies on the BeadArray™ platform
inferredcites →https://doi.org/10.1007/978-0-387-36011-9openalex-snapshot
Association Mapping in Plants
inferredcites →https://doi.org/10.1007/978-0-387-36011-9_5openalex-snapshot
Single Nucleotide Polymorphism Genotyping in Plants
inferredcites →https://doi.org/10.1007/978-94-011-5794-0_1openalex-snapshot
Comparative genetics in the grasses
inferredcites →https://doi.org/10.1007/bf00223901openalex-snapshot
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inferredcites →https://doi.org/10.1007/bf02918566openalex-snapshot
Oxford surveys of plant molecular and cell biology
inferredcites →https://doi.org/10.1007/s00122-003-1390-1openalex-snapshot
Mapping QTLs and candidate genes for rice root traits under different water-supply conditions and comparative analysis across three populations
inferredcites →https://doi.org/10.1007/s00122-004-1667-zopenalex-snapshot
Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice
inferredcites →https://doi.org/10.1007/s00122-004-1695-8openalex-snapshot
Linkage disequilibrium and sequence diversity in a 500-kbp region around the adh1 locus in elite maize germplasm
inferredcites →https://doi.org/10.1007/s00122-008-0710-xopenalex-snapshot
Association mapping of iron deficiency chlorosis loci in soybean (Glycine max L. Merr.) advanced breeding lines
inferredcites →https://doi.org/10.1007/s00122-010-1324-7openalex-snapshot
Genetic diversity and population structure of a diverse set of rice germplasm for association mapping
inferredcites →https://doi.org/10.1007/s00122-010-1331-8openalex-snapshot
Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding
inferredcites →https://doi.org/10.1007/s00122-010-1414-6openalex-snapshot
Genetic and comparative genomics mapping reveals that a powdery mildew resistance gene Ml3D232 originating from wild emmer co-segregates with an NBS-LRR analog in common wheat (Triticum aestivum L.)
inferredcites →https://doi.org/10.1007/s00122-011-1607-7openalex-snapshot
High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.)
inferredcites →https://doi.org/10.1007/s10658-009-9549-5openalex-snapshot
Targeted mapping of rice ESTs to the LmPi1 locus for grey leaf spot resistance in Italian ryegrass
inferredcites →https://doi.org/10.1007/s10681-007-9535-yopenalex-snapshot
Molecular diversity and genome-wide linkage disequilibrium patterns in a worldwide collection of Oryza sativa and its wild relatives
inferredcites →https://doi.org/10.1007/s10681-016-1815-yopenalex-snapshot
Plant breeding: past, present and future
inferredcites →https://doi.org/10.1007/s11032-009-9357-9openalex-snapshot
Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery
inferredcites →https://doi.org/10.1007/s11032-010-9442-0openalex-snapshot
Genome-wide association mapping of Fusarium head blight resistance in contemporary barley breeding germplasm
inferredcites →https://doi.org/10.1007/s11103-005-4209-4openalex-snapshot
Transcription Profile Analyses Identify Genes and Pathways Central to Root Cap Functions in Maize
inferredcites →https://doi.org/10.1007/s11103-008-9437-yopenalex-snapshot
Map-based cloning and characterization of a gene controlling hairiness and seed coat color traits in Brassica rapa
inferredcites →https://doi.org/10.1007/s11103-009-9574-yopenalex-snapshot
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inferredcites →https://doi.org/10.1016/1360-1385(96)86898-1openalex-snapshot
Polymorphism revealed by simple sequence repeats
inferredcites →https://doi.org/10.1016/j.cell.2008.03.029openalex-snapshot
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
inferredcites →https://doi.org/10.1016/j.ddtec.2005.08.017openalex-snapshot
High throughput, nanoliter quantitative PCR
inferredcites →https://doi.org/10.1016/j.fcr.2010.12.017openalex-snapshot
High-throughput non-destructive biomass determination during early plant development in maize under field conditions
inferredcites →https://doi.org/10.1016/j.jcs.2007.06.012openalex-snapshot
Cereal β-glucans in diet and health
inferredcites →https://doi.org/10.1016/j.pbi.2008.11.002openalex-snapshot
Functional genomics of root growth and development in Arabidopsis
inferredcites →https://doi.org/10.1016/j.pbi.2008.11.003openalex-snapshot
David and Goliath: what can the tiny weed Arabidopsis teach us to improve biomass production in crops?
inferredcites →https://doi.org/10.1016/j.pbi.2008.11.005openalex-snapshot
Translating Medicago truncatula genomics to crop legumes
inferredcites →https://doi.org/10.1016/j.pbi.2008.12.002openalex-snapshot
Genetic and genomic dissection of maize root development and architecture
inferredcites →https://doi.org/10.1016/j.pbi.2008.12.006openalex-snapshot
Epigenetic regulation of stress responses in plants
inferredcites →https://doi.org/10.1016/j.pbi.2008.12.009openalex-snapshot
SNP identification in crop plants
inferredcites →https://doi.org/10.1016/j.plantsci.2007.04.012openalex-snapshot
Transcriptional profiling of canola (Brassica napus L.) responses to the fungal pathogen Sclerotinia sclerotiorum
inferredcites →https://doi.org/10.1016/j.plantsci.2010.03.006openalex-snapshot
Future and frontiers of automated screening in plant sciences
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Next-generation sequencing technologies and their implications for crop genetics and breeding
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The impact of next-generation sequencing technology on genetics
inferredcites →https://doi.org/10.1016/j.tplants.2004.12.012openalex-snapshot
Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters
inferredcites →https://doi.org/10.1016/j.tplants.2005.04.008openalex-snapshot
To clone or not to clone plant QTLs: present and future challenges
inferredcites →https://doi.org/10.1016/j.tplants.2005.10.004openalex-snapshot
Genomics-assisted breeding for crop improvement
inferredcites →https://doi.org/10.1016/j.tplants.2006.06.003openalex-snapshot
Genomics-based approaches to improve drought tolerance of crops
inferredcites →https://doi.org/10.1016/j.tplants.2006.09.002openalex-snapshot
The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes
inferredcites →https://doi.org/10.1016/j.tplants.2008.02.003openalex-snapshot
Plant systems biology comes of age
inferredcites →https://doi.org/10.1016/j.tplants.2010.12.002openalex-snapshot
Redefining plant systems biology: from cell to ecosystem
inferredcites →https://doi.org/10.1016/j.tplants.2011.02.006openalex-snapshot
Fast-forward genetics enabled by new sequencing technologies
inferredcites →https://doi.org/10.1016/j.ygeno.2008.07.001openalex-snapshot
Applications of next-generation sequencing technologies in functional genomics
inferredcites →https://doi.org/10.1016/j.ygeno.2008.07.013openalex-snapshot
Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm
inferredcites →https://doi.org/10.1016/j.ymeth.2009.03.016openalex-snapshot
RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing
inferredcites →https://doi.org/10.1016/s0168-9452(01)00587-8openalex-snapshot
Novel genetic mapping tools in plants: SNPs and LD-based approaches
inferredcites →https://doi.org/10.1016/s0168-9525(00)88999-4openalex-snapshot
Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes
inferredcites →https://doi.org/10.1016/s0168-9525(01)02310-1openalex-snapshot
Genetical genomics: the added value from segregation
inferredcites →https://doi.org/10.1016/s0168-9525(01)02550-1openalex-snapshot
Linkage disequilibrium and the mapping of complex human traits
inferredcites →https://doi.org/10.1016/s0168-9525(02)02557-xopenalex-snapshot
Linkage disequilibrium: what history has to tell us
inferredcites →https://doi.org/10.1016/s0300-9084(02)00024-xopenalex-snapshot
Improvement of drought tolerance in maize: towards the functional validation of the Zm-Asr1 gene and increase of water use efficiency by over-expressing C4–PEPC
inferredcites →https://doi.org/10.1016/s0378-1119(97)00398-3openalex-snapshot
Patterns and rates of indel evolution in processed pseudogenes from humans and murids
inferredcites →https://doi.org/10.1016/s1360-1385(96)86898-0openalex-snapshot
Polymorphism revealed by simple sequence repeats
inferredcites →https://doi.org/10.1016/s1369-5266(00)00149-7openalex-snapshot
Genome-wide expression analysis of plant cell cycle modulated genes
inferredcites →https://doi.org/10.1021/pr050291gopenalex-snapshot
Proteomic Analysis of Rice Leaf Sheath during Drought Stress
inferredcites →https://doi.org/10.1038/13783openalex-snapshot
Structural genomics: beyond the Human Genome Project
inferredcites →https://doi.org/10.1038/35087138openalex-snapshot
Navigating gene expression using microarrays — a technology review
inferredcites →https://doi.org/10.1038/msb.2009.47openalex-snapshot
Pathway databases and tools for their exploitation: benefits, current limitations and challenges
inferredcites →https://doi.org/10.1038/nature03959openalex-snapshot
Genome sequencing in microfabricated high-density picolitre reactors
inferredcites →https://doi.org/10.1038/nature06745openalex-snapshot
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
inferredcites →https://doi.org/10.1038/nature07517openalex-snapshot
Accurate whole human genome sequencing using reversible terminator chemistry
inferredcites →https://doi.org/10.1038/nbt1192openalex-snapshot
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement
inferredcites →https://doi.org/10.1038/ng.499openalex-snapshot
Exome sequencing identifies the cause of a mendelian disorder
inferredcites →https://doi.org/10.1038/ng.591openalex-snapshot
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice
inferredcites →https://doi.org/10.1038/ng.654openalex-snapshot
The genome of the domesticated apple (Malus × domestica Borkh.)
inferredcites →https://doi.org/10.1038/ng.703openalex-snapshot
The developmental dynamics of the maize leaf transcriptome
inferredcites →https://doi.org/10.1038/ng.740openalex-snapshot
The genome of woodland strawberry (Fragaria vesca)
inferredcites →https://doi.org/10.1038/ng.746openalex-snapshot
Genome-wide association study of leaf architecture in the maize nested association mapping population
inferredcites →https://doi.org/10.1038/ng.85openalex-snapshot
A phenylalanine in DGAT is a key determinant of oil content and composition in maize
inferredcites →https://doi.org/10.1038/nmeth.1226openalex-snapshot
Mapping and quantifying mammalian transcriptomes by RNA-Seq
inferredcites →https://doi.org/10.1038/nmeth.1419openalex-snapshot
Target-enrichment strategies for next-generation sequencing
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Mutation discovery by targeted genomic enrichment of multiplexed barcoded samples
inferredcites →https://doi.org/10.1038/nmeth1109openalex-snapshot
Microarray-based genomic selection for high-throughput resequencing
inferredcites →https://doi.org/10.1038/nrg2626openalex-snapshot
Sequencing technologies — the next generation
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Principles and challenges of genome-wide DNA methylation analysis
inferredcites →https://doi.org/10.1038/nrg3012openalex-snapshot
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
inferredcites →https://doi.org/10.1038/sj.hdy.6885001openalex-snapshot
QTL analysis in plants; where are we now?
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High‐Cot sequence analysis of the maize genome
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Molecular markers and their applications in wheat breeding
inferredcites →https://doi.org/10.1071/fp02020openalex-snapshot
Review: Environmental biology and crop improvement
inferredcites →https://doi.org/10.1073/pnas.0606133103openalex-snapshot
Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties
inferredcites →https://doi.org/10.1073/pnas.0609513103openalex-snapshot
Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators
inferredcites →https://doi.org/10.1073/pnas.0610429104openalex-snapshot
Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci
inferredcites →https://doi.org/10.1073/pnas.0737574100openalex-snapshot
A network of rice genes associated with stress response and seed development
inferredcites →https://doi.org/10.1073/pnas.1005931107openalex-snapshot
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
inferredcites →https://doi.org/10.1073/pnas.1010894108openalex-snapshot
Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize
inferredcites →https://doi.org/10.1073/pnas.132259199openalex-snapshot
Intraspecific violation of genetic colinearity and its implications in maize
inferredcites →https://doi.org/10.1073/pnas.201394398openalex-snapshot
Structure of linkage disequilibrium and phenotypic associations in the maize genome
inferredcites →https://doi.org/10.1073/pnas.94.13.6809openalex-snapshot
DNA sequence evidence for the segmental allotetraploid origin of maize
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Comparative genetics in the grasses
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An introduction to association mapping in plants.
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Long, Processive Enzymatic DNA Synthesis Using 100% Dye-Labeled Terminal Phosphate-Linked Nucleotides
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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
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Genome Structure of the Legume, Lotus japonicus
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Prediction of Total Genetic Value Using Genome-Wide Dense Marker Maps
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Effective and specific in planta RNAi in cyst nematodes: expression interference of four parasitism genes reduces parasitic success
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DNA polymorphisms amplified by arbitrary primers are useful as genetic markers
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Fingerprinting genomes using PCR with arbitrary primers
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AFLP: a new technique for DNA fingerprinting
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Genomics and Bioinformatics Resources for Crop Improvement
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Designing and encoding models for synthetic biology
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Marker-assisted selection: an approach for precision plant breeding in the twenty-first century
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A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
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Sequencing of natural strains of Arabidopsis thaliana with short reads
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High-throughput genotyping by whole-genome resequencing
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Abundance, Distribution, and Transcriptional Activity of Repetitive Elements in the Maize Genome
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Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries
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Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization.
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Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion
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Highly Parallel SNP Genotyping
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Mining for Single Nucleotide Polymorphisms and Insertions/Deletions in Maize Expressed Sequence Tag Data
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The roothairless1 Gene of Maize Encodes a Homolog of sec3, Which Is Involved in Polar Exocytosis
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Isolation, Characterization, and Pericycle-Specific Transcriptome Analyses of the Novel Maize Lateral and Seminal Root Initiation Mutant rum1
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B73-Mo17 Near-Isogenic Lines Demonstrate Dispersed Structural Variation in Maize
inferredcites →https://doi.org/10.1104/pp.125.3.1342openalex-snapshot
Comparative Sequence Analysis of Colinear Barley and Rice Bacterial Artificial Chromosomes
inferredcites →https://doi.org/10.1105/tpc.107.055087openalex-snapshot
Brassinosteroids Regulate Grain Filling in Rice
inferredcites →https://doi.org/10.1105/tpc.107.056309openalex-snapshot
Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution
inferredcites →https://doi.org/10.1105/tpc.110.082537openalex-snapshot
Unlocking the Barley Genome by Chromosomal and Comparative Genomics
inferredcites →https://doi.org/10.1105/tpc.13.4.979openalex-snapshot
Comparative Sequence Analysis Reveals Extensive Microcolinearity in the Lateral Suppressor Regions of the Tomato, Arabidopsis, and Capsella Genomes
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SNP discovery via 454 transcriptome sequencing
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What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research
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Identifying regions of the wheat genome controlling seed development by mapping expression quantitative trait loci†
inferredcites →https://doi.org/10.1111/j.1467-7652.2009.00401.xopenalex-snapshot
Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing
inferredcites →https://doi.org/10.1111/j.1467-7652.2009.00460.xopenalex-snapshot
Expression quantitative trait loci analysis in plants
inferredcites →https://doi.org/10.1126/science.1058040openalex-snapshot
The Sequence of the Human Genome
inferredcites →https://doi.org/10.1126/science.1091265openalex-snapshot
Maize Genome Sequencing by Methylation Filtration
inferredcites →https://doi.org/10.1126/science.1107891openalex-snapshot
The Effects of Artificial Selection on the Maize Genome
inferredcites →https://doi.org/10.1126/science.1122975openalex-snapshot
Cellulose Synthase-Like CslF Genes Mediate the Synthesis of Cell Wall (1,3;1,4)-ß- d -Glucans
inferredcites →https://doi.org/10.1126/science.1146265openalex-snapshot
A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns
inferredcites →https://doi.org/10.1126/science.1157956openalex-snapshot
Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
inferredcites →https://doi.org/10.1126/science.1162986openalex-snapshot
Real-Time DNA Sequencing from Single Polymerase Molecules
inferredcites →https://doi.org/10.1126/science.1185383openalex-snapshot
Food Security: The Challenge of Feeding 9 Billion People
inferredcites →https://doi.org/10.1126/science.280.5366.1077openalex-snapshot
Large-Scale Identification, Mapping, and Genotyping of Single-Nucleotide Polymorphisms in the Human Genome
inferredcites →https://doi.org/10.1126/science.327.5970.1190openalex-snapshot
Semiconductors Inspire New Sequencing Technologies
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Association mapping for phenological, morphological, and quality traits in canola quality winter rapeseed ( Brassica napus L.)This article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD…
inferredcites →https://doi.org/10.1139/g10-076openalex-snapshot
Genome-wide association and genomic selection in animal breedingThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.
inferredcites →https://doi.org/10.1146/annurev.genom.9.081307.164359openalex-snapshot
Next-Generation DNA Sequencing Methods
inferredcites →https://doi.org/10.1155/2008/574927openalex-snapshot
Application of Association Mapping to Understanding the Genetic Diversity of Plant Germplasm Resources
inferredcites →https://doi.org/10.1186/1471-2105-12-s1-s24openalex-snapshot
Strobe sequence design for haplotype assembly
inferredcites →https://doi.org/10.1186/1471-2148-10-190openalex-snapshot
Comparative genomics reveals conservative evolution of the xylem transcriptome in vascular plants
inferredcites →https://doi.org/10.1186/1471-2156-9-23openalex-snapshot
HaploSNPer: a web-based allele and SNP detection tool
inferredcites →https://doi.org/10.1186/1471-2164-12-100openalex-snapshot
Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)
inferredcites →https://doi.org/10.1186/1471-2164-12-302openalex-snapshot
Single nucleotide polymorphism discovery in elite north american potato germplasm
inferredcites →https://doi.org/10.1186/1471-2164-12-336openalex-snapshot
Genome-wide expression quantitative trait loci (eQTL) analysis in maize
inferredcites →https://doi.org/10.1186/1471-2164-12-77openalex-snapshot
Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology
inferredcites →https://doi.org/10.1186/1471-2229-8-32openalex-snapshot
Spatial distribution of transcript changes in the maize primary root elongation zone at low water potential
inferredcites →https://doi.org/10.1255/jnirs.665openalex-snapshot
Near Infrared Spectroscopy to Measure Maize Grain Composition on Plot Combine Harvesters: Evaluation of Calibration Techniques, Mathematical Transformations and Scatter Corrections
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Parallel confocal detection of single molecules in real time
inferredcites →https://doi.org/10.1371/journal.pgen.0010060openalex-snapshot
Genome-Wide Association Mapping in Arabidopsis Identifies Previously Known Flowering Time and Pathogen Resistance Genes
inferredcites →https://doi.org/10.1371/journal.pgen.1000734openalex-snapshot
Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
inferredcites →https://doi.org/10.1371/journal.pone.0001172openalex-snapshot
Complexity Reduction of Polymorphic Sequences (CRoPS™): A Novel Approach for Large-Scale Polymorphism Discovery in Complex Genomes
inferredcites →https://doi.org/10.1371/journal.pone.0001326openalex-snapshot
A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety
inferredcites →https://doi.org/10.1371/journal.pone.0003156openalex-snapshot
Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana
inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
inferredcites →https://doi.org/10.1371/journal.pone.0010065openalex-snapshot
Comparative Genomics of Flowering Time Pathways Using Brachypodium distachyon as a Model for the Temperate Grasses
inferredcites →https://doi.org/10.1371/journal.pone.0017094openalex-snapshot
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What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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