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Changes in DNA methylation assessed by genomic bisulfite sequencing suggest a role for DNA methylation in cotton fruiting branch development

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00122-014-2452-2openalex-snapshot

Genetic mapping of the nulliplex-branch gene (gb_nb1) in cotton using next-generation sequencing

inferredcites →https://doi.org/10.1007/s00438-014-0930-5openalex-snapshot

Mapping genomic loci for cotton plant architecture, yield components, and fiber properties in an interspecific (Gossypium hirsutum L. × G. barbadense L.) RIL population

inferredcites →https://doi.org/10.1007/s10681-008-9809-zopenalex-snapshot

Genetic detection of node of first fruiting branch in crosses of a cultivar with two exotic accessions of upland cotton

inferredcites →https://doi.org/10.1007/s10681-012-0720-2openalex-snapshot

QTL detection for node of first fruiting branch and its height in upland cotton (Gossypium hirsutum L.)

inferredcites →https://doi.org/10.1016/j.cell.2006.08.003openalex-snapshot

Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis

inferredcites →https://doi.org/10.1016/j.cell.2009.06.014openalex-snapshot

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

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The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

inferredcites →https://doi.org/10.1016/j.copbio.2004.02.003openalex-snapshot

Generating high-yielding varieties by genetic manipulation of plant architecture

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Flowering time regulation in crops — what did we learn from Arabidopsis?

inferredcites →https://doi.org/10.1016/j.jgg.2013.02.003openalex-snapshot

MicroRNAs and Their Cross-Talks in Plant Development

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NADPH oxidase activity in pollen tubes is affected by calcium ions, signaling phospholipids and Rac/Rop GTPases

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Interactions among LOX metabolites regulate temperature-mediated flower bud formation in morning glory (Pharbitis nil)

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The circadian clock gene regulatory module enantioselectively mediates imazethapyr-induced early flowering in Arabidopsis thaliana

inferredcites →https://doi.org/10.1016/j.molp.2014.12.018openalex-snapshot

To Bloom or Not to Bloom: Role of MicroRNAs in Plant Flowering

inferredcites →https://doi.org/10.1016/j.plantsci.2012.03.002openalex-snapshot

Manipulating plant architecture with members of the CETS gene family

inferredcites →https://doi.org/10.1016/j.tplants.2010.01.002openalex-snapshot

siRNAs and DNA methylation: seedy epigenetics

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DEMETER, a DNA Glycosylase Domain Protein, Is Required for Endosperm Gene Imprinting and Seed Viability in Arabidopsis

inferredcites →https://doi.org/10.1016/s0092-8674(02)01133-9openalex-snapshot

ROS1, a Repressor of Transcriptional Gene Silencing in Arabidopsis, Encodes a DNA Glycosylase/Lyase

inferredcites →https://doi.org/10.1021/bi500922qopenalex-snapshot

Circadian Clock and Photoperiodic Response in Arabidopsis : From Seasonal Flowering to Redox Homeostasis

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OsPIPK1, a Rice Phosphatidylinositol Monophosphate Kinase, Regulates Rice Heading by Modifying the Expression of Floral Induction Genes

inferredcites →https://doi.org/10.1038/43657openalex-snapshot

An epigenetic mutation responsible for natural variation in floral symmetry

inferredcites →https://doi.org/10.1038/cr.2011.23openalex-snapshot

Regulation and function of DNA methylation in plants and animals

inferredcites →https://doi.org/10.1038/nature11798openalex-snapshot

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

inferredcites →https://doi.org/10.1038/nbt.1626openalex-snapshot

Single base–resolution methylome of the silkworm reveals a sparse epigenomic map

inferredcites →https://doi.org/10.1038/nbt.2462openalex-snapshot

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

inferredcites →https://doi.org/10.1038/nbt.3207openalex-snapshot

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

inferredcites →https://doi.org/10.1038/ng1841openalex-snapshot

A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening

inferredcites →https://doi.org/10.1038/nrg2719openalex-snapshot

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

inferredcites →https://doi.org/10.1038/nsmb.2735openalex-snapshot

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

inferredcites →https://doi.org/10.1038/sj.cr.7290200openalex-snapshot

DNA chip-based expression profile analysis indicates involvement of the phosphatidylinositol signaling pathway in multiple plant responses to hormone and abiotic treatments

inferredcites →https://doi.org/10.1038/srep23212openalex-snapshot

To Be a Flower or Fruiting Branch: Insights Revealed by mRNA and Small RNA Transcriptomes from Different Cotton Developmental Stages

inferredcites →https://doi.org/10.1073/pnas.1209329109openalex-snapshot

Widespread dynamic DNA methylation in response to biotic stress

inferredcites →https://doi.org/10.1093/embo-reports/kvf177openalex-snapshot

Plant architecture

inferredcites →https://doi.org/10.1093/genetics/135.3.881openalex-snapshot

Paramutation, an allelic interaction, is associated with a stable and heritable reduction of transcription of the maize b regulatory gene.

inferredcites →https://doi.org/10.1093/nar/gkn294openalex-snapshot

QUMA: quantification tool for methylation analysis

inferredcites →https://doi.org/10.1093/pcp/41.1.110openalex-snapshot

Stress-Induced Factor Involved in Flower Formation of Lemna is an -Ketol Derivative of Linolenic Acid

inferredcites →https://doi.org/10.1093/pcp/pcg007openalex-snapshot

Endogenous α-Ketol Linolenic Acid Levels in Short Day-Induced Cotyledons are Closely Related to Flower Induction in Pharbitis nil

inferredcites →https://doi.org/10.1101/gr.077479.108openalex-snapshot

An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)

inferredcites →https://doi.org/10.1104/pp.15.00414openalex-snapshot

Global Analysis Reveals the Crucial Roles of DNA Methylation during Rice Seed Development

inferredcites →https://doi.org/10.1104/pp.16.00056openalex-snapshot

Genomic DNA methylation analyses reveal the distinct profiles in castor bean seeds with persistent endosperms

inferredcites →https://doi.org/10.1104/pp.16.01750openalex-snapshot

Tetrahydrofolate Modulates Floral Transition through Epigenetic Silencing

inferredcites →https://doi.org/10.1105/tpc.014407openalex-snapshot

SETH1 and SETH2 , Two Components of the Glycosylphosphatidylinositol Anchor Biosynthetic Pathway, Are Required for Pollen Germination and Tube Growth in Arabidopsis [W]

inferredcites →https://doi.org/10.1105/tpc.105.038836openalex-snapshot

DNA Methylation Is Critical for Arabidopsis Embryogenesis and Seed Viability

inferredcites →https://doi.org/10.1105/tpc.106.041178openalex-snapshot

Maintenance of DNA Methylation during theArabidopsisLife Cycle Is Essential for Parental Imprinting

inferredcites →https://doi.org/10.1105/tpc.109.072041openalex-snapshot

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

inferredcites →https://doi.org/10.1105/tpc.111.087981openalex-snapshot

Shoot Branching and Leaf Dissection in Tomato Are Regulated by Homologous Gene Modules

inferredcites →https://doi.org/10.1105/tpc.112.109090openalex-snapshot

BRANCHED1 Interacts with FLOWERING LOCUS T to Repress the Floral Transition of the Axillary Meristems in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.114.124388openalex-snapshot

mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat

inferredcites →https://doi.org/10.1105/tpc.15.00854openalex-snapshot

Epigenetic Regulation of Vegetative Phase Change in Arabidopsis

inferredcites →https://doi.org/10.1111/j.1365-3040.2009.02027.xopenalex-snapshot

Over‐expression of Brassica napus phosphatidylinositol‐phospholipase C2 in canola induces significant changes in gene expression and phytohormone distribution patterns, enhances drought tolerance and promotes early flowering and maturation†

inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03284.xopenalex-snapshot

TAC1 , a major quantitative trait locus controlling tiller angle in rice

inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04435.xopenalex-snapshot

Phosphatidylinositol‐4,5‐bisphosphate influences Nt‐Rac5‐mediated cell expansion in pollen tubes of Nicotiana tabacum

inferredcites →https://doi.org/10.1111/nph.14037openalex-snapshot

Monopodial and sympodial branching architecture in cotton is differentially regulated by the Gossypium hirsutum SINGLE FLOWER TRUSS and SELF ‐ PRUNING orthologs

inferredcites →https://doi.org/10.1111/tpj.12726openalex-snapshot

Whole‐genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis

inferredcites →https://doi.org/10.1111/tpj.12919openalex-snapshot

The role of miR156/ SPL s modules in Arabidopsis lateral root development

inferredcites →https://doi.org/10.1126/science.1172417openalex-snapshot

Genome-Wide Demethylation of Arabidopsis Endosperm

inferredcites →https://doi.org/10.1126/science.1190614openalex-snapshot

Epigenetic Reprogramming in Plant and Animal Development

inferredcites →https://doi.org/10.1186/1471-2105-10-232openalex-snapshot

BSMAP: whole genome bisulfite sequence MAPping program

inferredcites →https://doi.org/10.1186/1471-2105-9-371openalex-snapshot

Kismeth: Analyzer of plant methylation states through bisulfite sequencing

inferredcites →https://doi.org/10.1186/s13059-015-0597-1openalex-snapshot

Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis

inferredcites →https://doi.org/10.1242/dev.063511openalex-snapshot

The control of developmental phase transitions in plants

inferredcites →https://doi.org/10.1371/journal.pone.0036746openalex-snapshot

Geminivirus-Mediated Delivery of Florigen Promotes Determinate Growth in Aerial Organs and Uncouples Flowering from Photoperiod in Cotton

inferredcites →https://doi.org/10.3389/fpls.2017.00873openalex-snapshot

Small RNA-Sequencing Links Physiological Changes and RdDM Process to Vegetative-to-Floral Transition in Apple

inferredcites →https://doi.org/10.4161/psb.23602openalex-snapshot

Overexpression ofFTin cotton affects architecture but not floral organogenesis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1186/s42397-026-00266-0openalex-snapshot

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Insight Between the Epigenetics and Transcription Responding of Cotton Hypocotyl Cellular Elongation Under Salt-Alkaline Stress

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Additional file 1 of Dynamic profiles of DNA methylation and the interaction with histone acetylation during fiber cell initiation of Gossypium hirsutum

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