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Metabarcoding reveals a high diversity of woody host-associated Phytophthora spp. in soils at public gardens and amenity woodlands in Britain

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi1107s32openalex-snapshot

Aligning Short Sequencing Reads with Bowtie

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Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples

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Urban environments provide opportunities for early detections of Phytophthora invasions

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Urban trees: bridge-heads for forest pest invasions and sentinels for early detection

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Phytophthora versiformis sp. nov., a new species from Australia related to P. quercina

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PCR protocols — A guide to methods and applications

inferredcites →https://doi.org/10.1016/j.agee.2018.01.032openalex-snapshot

Cropping history shapes fungal, oomycete and nematode communities in arable soils and affects cavity spot in carrot

inferredcites →https://doi.org/10.1016/j.funbio.2012.12.004openalex-snapshot

Survival of Phytophthora cinnamomi as oospores, stromata, and thick-walled chlamydospores in roots of symptomatic and asymptomatic annual and herbaceous perennial plant species

inferredcites →https://doi.org/10.1016/j.funeco.2018.09.001openalex-snapshot

Community composition and distribution of Phytophthora species across adjacent native and non-native forests of South Africa

inferredcites →https://doi.org/10.1016/j.mimet.2011.12.012openalex-snapshot

A molecular method to assess Phytophthora diversity in environmental samples

inferredcites →https://doi.org/10.1016/j.mycres.2008.11.004openalex-snapshot

AFLPs detect low genetic diversity for Phytophthora nemorosa and P. pseudosyringae in the US and Europe

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1016/s0261-2194(97)83220-6openalex-snapshot

Phytophthora diseases worldwide

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Three new species of Phytophthora from European oak forests

inferredcites →https://doi.org/10.1017/s095375620300738xopenalex-snapshot

Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile

inferredcites →https://doi.org/10.1017/s0953756203008074openalex-snapshot

Phytophthora pseudosyringae sp. nov., a new species causing root and collar rot of deciduous tree species in Europe

inferredcites →https://doi.org/10.1017/s0953756205003357openalex-snapshot

Phytophthora kernoviae sp. nov., an invasive pathogen causing bleeding stem lesions on forest trees and foliar necrosis of ornamentals in the UK

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Detection of Phytophthora nicotianae and P. citrophthora in Citrus Roots and Soils by Nested PCR

inferredcites →https://doi.org/10.1038/466824aopenalex-snapshot

Sudden larch death

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Contrasting distribution patterns between aquatic and terrestrial Phytophthora species along a climatic gradient are linked to functional traits

inferredcites →https://doi.org/10.1071/pc16032openalex-snapshot

Distribution and diversity of Phytophthora across Australia

inferredcites →https://doi.org/10.1073/pnas.1401884111openalex-snapshot

The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes

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Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses

inferredcites →https://doi.org/10.1093/bioinformatics/btt593openalex-snapshot

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/femsec/fiy048openalex-snapshot

eDNA from roots: a robust tool for determining Phytophthora communities in natural ecosystems

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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

inferredcites →https://doi.org/10.1094/pd-90-0827bopenalex-snapshot

First Report of Phytophthora europaea in Oak Forests in the Eastern and North-Central United States

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First Report of Phytophthora cactorum Causing Root Rot of Lavender in China

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First Report of Phytophthora pseudosyringae Causing Basal Cankers on Horse Chestnut in Sweden

inferredcites →https://doi.org/10.1094/pdis.2000.84.1.4openalex-snapshot

Managing Port-Orford-Cedar and the Introduced Pathogen Phytophthora lateralis

inferredcites →https://doi.org/10.1094/phyto-03-17-0126-ropenalex-snapshot

Morphological and Genetic Analyses of the Invasive Forest Pathogen Phytophthora austrocedri Reveal that Two Clonal Lineages Colonized Britain and Argentina from a Common Ancestral Population

inferredcites →https://doi.org/10.1094/phyto.2003.93.6.695openalex-snapshot

Three Clonal Lineages of Phytophthora cinnamomi in Australia Revealed by Microsatellites

inferredcites →https://doi.org/10.1099/00221287-42-3-425openalex-snapshot

The Sterol Requirement of Phytophthora Cactorum

inferredcites →https://doi.org/10.1111/1365-2664.13068openalex-snapshot

Functional traits associated with the establishment of introduced Phytophthora spp. in Swedish forests

inferredcites →https://doi.org/10.1111/1574-6941.12132openalex-snapshot

Pyrosequencing of environmental soil samples reveals biodiversity of the Phytophthora resident community in chestnut forests

inferredcites →https://doi.org/10.1111/ecog.03904openalex-snapshot

Predictors of Phytophthora diversity and community composition in natural areas across diverse Australian ecoregions

inferredcites →https://doi.org/10.1111/efp.12037openalex-snapshot

Previously unrecorded low‐temperature P hytophthora species associated with Q uercus decline in a Mediterranean forest in eastern Spain

inferredcites →https://doi.org/10.1111/efp.12239openalex-snapshot

Widespread Phytophthora infestations in European nurseries put forest, semi‐natural and horticultural ecosystems at high risk of Phytophthora diseases

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04089.xopenalex-snapshot

Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum

inferredcites →https://doi.org/10.1111/j.1365-3059.2008.01886.xopenalex-snapshot

The biosecurity threat to the UK and global environment from international trade in plants

inferredcites →https://doi.org/10.1111/j.1439-0329.2008.00552.xopenalex-snapshot

Geographic distribution, disease symptoms and pathogenicity of Phytophthora nemorosa and Phytophthora pseudosyringae in California, USA

inferredcites →https://doi.org/10.1111/j.1755-0998.2011.03041.xopenalex-snapshot

DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer

inferredcites →https://doi.org/10.1111/nph.14776openalex-snapshot

PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives

inferredcites →https://doi.org/10.1111/ppa.12016openalex-snapshot

Annual and herbaceous perennial native A ustralian plant species are symptomless hosts of P hytophthora cinnamomi in the E ucalyptus marginata (jarrah) forest of W estern A ustralia

inferredcites →https://doi.org/10.1111/ppa.12067openalex-snapshot

Evidence of low levels of genetic diversity for the P hytophthora austrocedrae population in P atagonia, A rgentina

inferredcites →https://doi.org/10.1111/ppa.12253openalex-snapshot

Phytophthora austrocedrae emerges as a serious threat to juniper ( J uniperus communis ) in B ritain

inferredcites →https://doi.org/10.1111/ppa.12399openalex-snapshot

Dieback and mortality of Nothofagus in Britain: ecology, pathogenicity and sporulation potential of the causal agent Phytophthora pseudosyringae

inferredcites →https://doi.org/10.1111/ppa.12541openalex-snapshot

Metabarcoding and development of new real‐time specific assays reveal Phytophthora species diversity in holm oak forests in eastern Spain

inferredcites →https://doi.org/10.1111/ppa.12812openalex-snapshot

Genetic diversity of Phytophthora pluvialis , a pathogen of conifers, in New Zealand and the west coast of the United States of America

inferredcites →https://doi.org/10.1128/aem.00119-09openalex-snapshot

Zoosporic Tolerance to pH Stress and Its Implications for Phytophthora Species in Aquatic Ecosystems

inferredcites →https://doi.org/10.1128/msphere.00095-17openalex-snapshot

Phylogenomic Reconstruction of the Oomycete Phylogeny Derived from 37 Genomes

inferredcites →https://doi.org/10.1139/g98-060openalex-snapshot

Families of repeated DNA in the oomycete Phytophthora infestans and their distribution within the genus

inferredcites →https://doi.org/10.1146/annurev.phyto.38.1.541openalex-snapshot

New Frontiers in the Study of Dispersal and Spatial Analysis of Epidemics Caused by Species in the GenusPhytophthora

inferredcites →https://doi.org/10.1186/s12859-016-0976-yopenalex-snapshot

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

inferredcites →https://doi.org/10.1186/s40490-014-0006-7openalex-snapshot

Pathogenicity of Phytophthora pluvialis to Pinus radiata and its relation with red needle cast disease in New Zealand

inferredcites →https://doi.org/10.1371/journal.pone.0119311openalex-snapshot

The Use of Genus-Specific Amplicon Pyrosequencing to Assess Phytophthora Species Diversity Using eDNA from Soil and Water in Northern Spain

inferredcites →https://doi.org/10.1371/journal.pone.0192502openalex-snapshot

Multiple origins of downy mildews and mito-nuclear discordance within the paraphyletic genus Phytophthora

inferredcites →https://doi.org/10.32614/cran.package.dharmaopenalex-snapshot

DHARMa: Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models

inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot

vegan: Community Ecology Package

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Re-evaluation of Phytophthora citricola isolates from multiple woody hosts in Europe and North America reveals a new species, Phytophthora plurivora sp. nov.

inferredcites →https://doi.org/10.3767/003158517x693615openalex-snapshot

Six new Phytophthora species from ITS Clade 7a including two sexually functional heterothallic hybrid species detected in natural ecosystems in Taiwan

inferredcites →https://doi.org/10.3852/10-058openalex-snapshot

Phytophthora pini Leonian resurrected to distinct species status

inferredcites →https://doi.org/10.4172/2157-7471.1000180openalex-snapshot

Phytophthora mississippiae sp. nov., a New Species Recovered from Irrigation Reservoirs at a Plant Nursery in Mississippi

inferredcites →https://doi.org/10.5197/j.2044-0588.2012.025.027openalex-snapshot

A new disease of Nothofagus in Britain caused by Phytophthora pseudosyringae

inferredcites →https://doi.org/10.5598/imafungus.2017.08.02.02openalex-snapshot

Multiple new cryptic pathogenic Phytophthora species from Fagaceae forests in Austria, Italy and Portugal

inferredcites →https://doi.org/10.5598/imafungus.2017.08.02.09openalex-snapshot

An expanded phylogeny for the genus Phytophthora

inferredcites →https://doi.org/10.5962/p.418468openalex-snapshot

Phytophthora nemorosa, a new species causing cankers and leaf blight of forest trees in California and Oregon, U.S.A

inferredcites →https://doi.org/10.7717/peerj.593openalex-snapshot

Swarm: robust and fast clustering method for amplicon-based studies

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← backgroundhttps://doi.org/10.5281/zenodo.3342957zenodo-depositor-declared

Metabarcoding reveals a high diversity of woody host-associated Phytophthora spp. in soils at public gardens and amenity woodlands in Britain

inferred← citeshttps://doi.org/10.1002/ece3.11308openalex-snapshot

Utility of decision tools for assessing plant health risks from management strategies in natural environments

inferred← citeshttps://doi.org/10.1002/edn3.300openalex-snapshot

Urban environments harbor greater oomycete and Phytophthora diversity, creating a bridgehead for potential new pathogens to natural ecosystems

inferred← citeshttps://doi.org/10.1002/edn3.529openalex-snapshot

Oomycete communities are influenced by land use and disease status in Christmas tree production in Southern Québec, Canada

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Impact of Phytophthora Disease on the Growth, Physiology and Ecosystem Services of Common Lime (Tilia × europaea) Street Trees

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Phytophthora Species Associated with Roots of Native and Non-native Trees in Natural and Managed Forests

inferred← citeshttps://doi.org/10.1007/s10658-023-02661-8openalex-snapshot

Sample volume affects the number of Phytophthora and Phytopythium species detected by soil baiting

inferred← citeshttps://doi.org/10.1007/s10658-024-02886-1openalex-snapshot

Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques

inferred← citeshttps://doi.org/10.1007/s11557-023-01892-7openalex-snapshot

Closing the gap between the number of Phytophthora species isolated through baiting a soil sample and the number revealed through metabarcoding

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Oomycete composition in Proteaceae orchards and natural stands on three continents

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Continuous Replanting Could Degrade Soil Health in Short-Rotation Plantation Forestry

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Root and crown rot caused by oomycetes: an emerging threat to olive trees

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Co-infection of Trichothecium roseum (Pers.) Link and Penicillium italicum Wehmer on sour orange fruit and pH-mediated differences in pathogenicity

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Retention of post-harvest residues enhances soil fungal biodiversity in Eucalyptus plantations

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From roots to crowns: Global reporting patterns of Phytophthora-associated symptoms in forest trees

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Timing and abundance of sporangia production and zoospore release influences the recovery of different Phytophthora species by baiting

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Metabarcoding reveals rhizosphere microbiome shifts between healthy and declining Quercus robur trees

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The Composition of the Fungal and Oomycete Microbiome of Rhododendron Roots Under Varying Growth Conditions, Nurseries, and Cultivars

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Full Issue PDF

inferred← citeshttps://doi.org/10.1094/pdis-04-20-0765-reopenalex-snapshot

Susceptibility of Garden Plants to Phytophthora Root Rot

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Enhanced TaqMan qPCR Assay for Phytophthora cinnamomi Detection and Quantification

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Humidity and high temperature are important for predicting fungal disease outbreaks worldwide

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The prevalence of Phytophthora in British plant nurseries; high‐risk hosts and substrates and opportunities to implement best practice

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Survey and characterization of oomycete species associated with root rot in UK red raspberry ( Rubus idaeus )

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Guidelines for the reliable use of high throughput sequencing technologies to detect plant pathogens and pests

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Multiplex detection of Phytophthora spp. using the Fluidigm platform

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Phytophthora : taxonomic and phylogenetic revision of the genus

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Phytophthora austrocedri in Argentina and Co-Inhabiting Phytophthoras: Roles of Anthropogenic and Abiotic Factors in Species Distribution and Diversity

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Diversity of Phytophthora Species Detected in Disturbed and Undisturbed British Soils Using High-Throughput Sequencing Targeting ITS rRNA and COI mtDNA Regions

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PHYTO-THREATS: Addressing Threats to UK Forests and Woodlands from Phytophthora; Identifying Risks of Spread in Trade and Methods for Mitigation

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Phytophthora Communities Associated with Agathis australis (kauri) in Te Wao Nui o Tiriwa/Waitākere Ranges, New Zealand

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Enhanced Detection of Phytophthora Species at P. pluvialis Outbreak Sites in Commercial Forests Across Britain

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Comparative Efficacy of × Hesperotropsis leylandii, Platycladus orientalis, and Juniperus communis Essential Oils Against Four Phytophthora Species Common in Nurseries and Forests

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Phytophthora pseudocryptogea Drives Dieback in Cycas revoluta: Comparative Pathogenicity of Three Phytophthora Species

inferred← citeshttps://doi.org/10.3390/horticulturae9060616openalex-snapshot

Phytophthora in Horticultural Nursery Green Waste—A Risk to Plant Health

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The Heterogeneity of Ornamental Plants in Nurseries Increases the Chance of Finding New Hosts for Phytophthora

inferred← citeshttps://doi.org/10.3390/jof8040330openalex-snapshot

DNA Metabarcoding and Isolation by Baiting Complement Each Other in Revealing Phytophthora Diversity in Anthropized and Natural Ecosystems

inferred← citeshttps://doi.org/10.3390/jof8070737openalex-snapshot

New-Generation Sequencing Technology in Diagnosis of Fungal Plant Pathogens: A Dream Comes True?

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Comparison of Primers for the Detection of Phytophthora (and Other Oomycetes) from Environmental Samples

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Comparative Genomic and Proteomic Analyses of Three Widespread Phytophthora Species: Phytophthora chlamydospora, Phytophthora gonapodyides and Phytophthora pseudosyringae

inferred← citeshttps://doi.org/10.3390/microorganisms8070973openalex-snapshot

Association of Phytophthora with Declining Vegetation in an Urban Forest Environment

inferred← citeshttps://doi.org/10.3390/plants12051197openalex-snapshot

Phytophthora pseudocryptogea, P. nicotianae and P. multivora Associated to Cycas revoluta: First Report Worldwide

inferred← citeshttps://doi.org/10.3390/plants9070826openalex-snapshot

First Report of Root Rot Caused by Phytophthora bilorbang on Olea europaea in Italy

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Phytophthora in forestry, natural environments, agriculture, and horticulture of the Mediterranean Basin and emerging Phytophthora threats from other regions

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Current status of Phytophthora in Australia

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Current status of Phytophthora in Australia.

inferred← citeshttps://doi.org/10.56866/9789588360959.14openalex-snapshot

Enfermedades de los cultivares híbridos interespecíficos OxG

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Anticiper, comprendre et analyser les pathologies complexes et émergentes des chênes

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THAPBI PICT—a fast, cautious, and accurate metabarcoding analysis pipeline

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.