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From the selfish gene to selfish metabolism: Revisiting the central dogma
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Non‐random mutation: The evolution of targeted hypermutation and hypomutation
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Targeted disruption of the housekeeping gene encoding glucose 6‐phosphate dehydrogenase (G6PD): G6PD is dispensable for pentose synthesis but essential for defense against oxidative stress.
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The Molecular Roots of Compositional Inheritance
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Transposon-Based and Plasmid-Based Genetic Tools for Editing Genomes of Gram-Negative Bacteria
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Hydrocarbon Degradation by Betaproteobacteria
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Aerobic Degradation of Aromatic Hydrocarbons
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The puzzle of the Krebs citric acid cycle: Assembling the pieces of chemically feasible reactions, and opportunism in the design of metabolic pathways during evolution
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The Puzzle of the Krebs Citric Acid Cycle: Assembling the Pieces of Chemically Feasible Reactions, and Opportunism in the Design of Metabolic Pathways During Evolution
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Chlorobenzoate inhibits growth and induces stress proteins in the PCB-degrading bacterium Burkholderia xenovorans LB400
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Strategies for improving plasmid stability in genetically modified bacteria in bioreactors
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Selfish genetic elements
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Biodegradation of polycyclic aromatic hydrocarbons
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Molecular evolution of the nicotinic acid requirement within the Shigella/EIEC pathotype
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Antimicrobials as promoters of genetic variation
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Phenylalanine induces Burkholderia cenocepacia phenylacetic acid catabolism through degradation to phenylacetyl-CoA in synthetic cystic fibrosis sputum medium
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Characterization of recombinant human insulin-like growth factor binding proteins 4, 5, and 6 produced in yeast.
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A Modular Hierarchy-Based Theory of the Chemical Origins of Life Based on Molecular Complementarity
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Pentachlorophenol Hydroxylase, a Poorly Functioning Enzyme Required for Degradation of Pentachlorophenol bySphingobium chlorophenolicum
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Life's demons: information and order in biology
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Community-wide plasmid gene mobilization and selection
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Systematic phenome analysis of Escherichia coli multiple‐knockout mutants reveals hidden reactions in central carbon metabolism
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Shared control of gene expression in bacteria by transcription factors and global physiology of the cell
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Basic and applied uses of genome‐scale metabolic network reconstructions of Escherichia coli
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The environmental fate of organic pollutants through the global microbial metabolism
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Pyrimidine homeostasis is accomplished by directed overflow metabolism
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Coordination of bacterial proteome with metabolism by cyclic AMP signalling
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Microbial production of short-chain alkanes
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High-throughput generation, optimization and analysis of genome-scale metabolic models
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Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production
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Large scale production of recombinant human lactoferrin in the milk of transgenic cows
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The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
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Genomic buffering mitigates the effects of deleterious mutations in bacteria
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Foundations for the design and implementation of synthetic genetic circuits
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The second wave of synthetic biology: from modules to systems
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New surveyor tools for charting microbial metabolic maps
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How antibiotics kill bacteria: from targets to networks
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Microbial degradation of aromatic compounds — from one strategy to four
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New insights into bacterial adaptation through in vivo and in silico experimental evolution
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Cellulosomes: plant-cell-wall-degrading enzyme complexes
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Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis
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Environmental and clinical isolates of Pseudomonas aeruginosa show pathogenic and biodegradative properties irrespective of their origin
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The Perpetual Challenge of Infectious Diseases
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Universality in intermediary metabolism
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Lack of evolvability in self-sustaining autocatalytic networks constraints metabolism-first scenarios for the origin of life
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Evolutionary remodeling of global regulatory networks during long-term bacterial adaptation to human hosts
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Manganese-oxidizing photosynthesis before the rise of cyanobacteria
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Steady-state Kinetic Characterization and Crystallization of a Polychlorinated Biphenyl-transforming Dioxygenase
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Stress-Induced Mutagenesis in Bacteria
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On the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells
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Nicotinamide dependence of uropathogenic Escherichia coli UTI89 and application of nadB as a neutral insertion site
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High Levels of Bioplastic Are Produced in Fertile Transplastomic Tobacco Plants Engineered with a Synthetic Operon for the Production of Polyhydroxybutyrate
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The E ntner– D oudoroff pathway empowers P seudomonas putida KT 2440 with a high tolerance to oxidative stress
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Consequences of Clostridium difficile infection: understanding the healthcare burden
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Did life originate from a global chemical reactor?
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The genome and surface proteome of Capnocytophaga canimorsus reveal a key role of glycan foraging systems in host glycoproteins deglycosylation
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Association of dnt genes of Burkholderia sp. DNT with the substrate-blind regulator DntR draws the evolutionary itinerary of 2,4-dinitrotoluene biodegradation
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A formal theory of the selfish gene
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Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales
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Metamobilomics – expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing
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Response to (chloro)biphenyls of the polychlorobiphenyl-degraderBurkholderia xenovoransLB400 involves stress proteins also induced by heat shock and oxidative stress
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Side effects of antibiotics on genetic variability
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Stress-Induced Mutagenesis in Bacteria
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Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
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Bacteria Subsisting on Antibiotics
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Oxidation of the Guanine Nucleotide Pool Underlies Cell Death by Bactericidal Antibiotics
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Killing by Bactericidal Antibiotics Does Not Depend on Reactive Oxygen Species
inferredcites →https://doi.org/10.1126/science.1232751openalex-snapshot
Cell Death from Antibiotics Without the Involvement of Reactive Oxygen Species
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Fe-S Cluster Biosynthesis Controls Uptake of Aminoglycosides in a ROS-Less Death Pathway
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Genetic Engineering of Bacteria from Managed and Natural Habitats
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Metabolism Is Not Boring
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Simultaneous Identification of Bacterial Virulence Genes by Negative Selection
inferredcites →https://doi.org/10.1126/science.8430319openalex-snapshot
Selection of Bacterial Virulence Genes That Are Specifically Induced in Host Tissues
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Bactericidal Antibiotics Do Not Appear To Cause Oxidative Stress in Listeria monocytogenes
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In Vivo-Induced Genes in Pseudomonas aeruginosa
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A Functional Phenylacetic Acid Catabolic Pathway Is Required for Full Pathogenicity of Burkholderia cenocepacia in the Caenorhabditis elegans Host Model
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How Escherichia coli Tolerates Profuse Hydrogen Peroxide Formation by a Catabolic Pathway
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Genomic Variation among Contemporary Pseudomonas aeruginosa Isolates from Chronically Infected Cystic Fibrosis Patients
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Glucose Metabolism in Legionella pneumophila : Dependence on the Entner-Doudoroff Pathway and Connection with Intracellular Bacterial Growth
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The Entner-Doudoroff Pathway Is Obligatory for Gluconate Utilization and Contributes to the Pathogenicity of Vibrio cholerae
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Benzene-Induced Uncoupling of Naphthalene Dioxygenase Activity and Enzyme Inactivation by Production of Hydrogen Peroxide
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Differential Expression of the Components of the Two Alkane Hydroxylases from Pseudomonas aeruginosa
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Adventures inRhodococcus — from steroids to explosivesThis article is based on a presentation by Dr. Lindsay Eltis at the 60th Annual Meeting of the Canadian Society of Microbiologists in Hamilton, Ontario, 14 June 2010. Dr. Eltis was the recipient of the 2010 Norgen Biotek Corporation / CSM…
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Evolution in Microbes
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In Vivo Genetic Analysis of Bacterial Virulence
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Inteins: Structure, Function, and Evolution
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Archetypal analysis of diverse Pseudomonas aeruginosatranscriptomes reveals adaptation in cystic fibrosis airways
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The Emergence and Early Evolution of Biological Carbon-Fixation
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Genome Analysis of a Transmissible Lineage of Pseudomonas aeruginosa Reveals Pathoadaptive Mutations and Distinct Evolutionary Paths of Hypermutators
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Endogenous Stress Caused by Faulty Oxidation Reactions Fosters Evolution of 2,4-Dinitrotoluene-Degrading Bacteria
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Phenotypic and Genetic Consequences of Protein Damage
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Non-Traditional Antibacterial Screening Approaches for the Identification of Novel Inhibitors of the Glyoxylate Shunt in Gram-Negative Pathogens
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What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Conference report “Stoffwechsel. Histories of metabolism”, workshop organized by Mathias Grote at Technische Universität Berlin, November 28–29th, 2014
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Single cell metabolomics
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Life as Aftermath: Social Theory for an Age of Anthropogenic Biology
inferred← citeshttps://doi.org/10.1177/27539687251371726openalex-snapshot
Making sense of nuclear natures: Ecologies, expertise, aesthetics
inferred← citeshttps://doi.org/10.1186/s12859-021-04252-yopenalex-snapshot
Predicting biological pathways of chemical compounds with a profile-inspired approach
inferred← citeshttps://doi.org/10.1186/s12866-015-0542-1openalex-snapshot
Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response
inferred← citeshttps://doi.org/10.1186/s40504-018-0086-xopenalex-snapshot
Evolutionary tinkering vs. rational engineering in the times of synthetic biology
inferred← citeshttps://doi.org/10.1215/22011919-8142198openalex-snapshot
Chemosociality in Multispecies Worlds
inferred← citeshttps://doi.org/10.15252/msb.20156382openalex-snapshot
A synthetic growth switch based on controlled expression of RNA polymerase
inferred← citeshttps://doi.org/10.3389/fbioe.2014.00059openalex-snapshot
Obsolescence and Intervention: On Synthetic-Biological Entities
inferred← citeshttps://doi.org/10.3389/fevo.2015.00123openalex-snapshot
Small genomes and the difficulty to define minimal translation and metabolic machineries
inferred← citeshttps://doi.org/10.3389/fmicb.2017.01088openalex-snapshot
Erythritol Availability in Bovine, Murine and Human Models Highlights a Potential Role for the Host Aldose Reductase during Brucella Infection
inferred← citeshttps://doi.org/10.3390/microorganisms14091898openalex-snapshot
Ability of Brucella melitensis 16M to Control Nitrogen Process: Identification of a Novel P-II Family Nitrogen Regulator
inferred← citeshttps://doi.org/10.3917/anpsy1.202.0103openalex-snapshot
The evolution of working memory
inferred← citeshttps://doi.org/10.3917/e.anpsy1.202.0103openalex-snapshot
The evolution of working memory
inferred← citeshttps://doi.org/10.3989/arbor.2014.768n4003openalex-snapshot
Biología sintética: la ingeniería al asalto de la complejidad biológica
inferred← citeshttps://doi.org/10.4081/scie.2014.196openalex-snapshot
LA BIOLOGIA SINTETICA COME UN NUOVO QUADRO INTERPRETATIVO DEI SISTEMI VIVENTI
inferred← citeshttps://doi.org/10.6084/m9.figshare.14775379openalex-snapshot
Additional file 1 of Predicting biological pathways of chemical compounds with a profile-inspired approach
inferred← citeshttps://doi.org/10.70675/a9e8c6faze8d0z44d4zb97dzcacb09c83ffdopenalex-snapshot
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