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High‐throughput sequencing and graph‐based cluster analysis facilitate microsatellite development from a highly complex genome

https://doi.org/10.1002/ece3.2305
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Alu Repeats: A Source for the Genesis of Primate Microsatellites
inferredcites →https://doi.org/10.1007/s00239-005-0022-6openalex-snapshot
Long Repeats in a Huge Genome: Microsatellite Loci in the Grasshopper Chorthippus biguttulus
inferredcites →https://doi.org/10.1007/s00412-014-0492-7openalex-snapshot
Next generation sequencing and FISH reveal uneven and nonrandom microsatellite distribution in two grasshopper genomes
inferredcites →https://doi.org/10.1007/s10709-015-9834-5openalex-snapshot
Next-generation sequencing detects repetitive elements expansion in giant genomes of annual killifish genus Austrolebias (Cyprinodontiformes, Rivulidae)
inferredcites →https://doi.org/10.1007/s12686-011-9586-1openalex-snapshot
Development of microsatellite markers for the wetland grasshopper Stethophyma grossum
inferredcites →https://doi.org/10.1016/0003-2697(90)90595-zopenalex-snapshot
Molecular cloning: A laboratory manual
inferredcites →https://doi.org/10.1016/j.molbiopara.2006.03.014openalex-snapshot
Characterisation of Teladorsagia circumcincta microsatellites and their development as population genetic markers
inferredcites →https://doi.org/10.1016/j.tree.2004.07.020openalex-snapshot
Lepidopteran microsatellite DNA: redundant but promising
inferredcites →https://doi.org/10.1038/72708openalex-snapshot
An economic method for the fluorescent labeling of PCR fragments
inferredcites →https://doi.org/10.1038/hdy.2010.36openalex-snapshot
Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs
inferredcites →https://doi.org/10.1038/ncomms3957openalex-snapshot
The locust genome provides insight into swarm formation and long-distance flight
inferredcites →https://doi.org/10.1038/ncomms4460openalex-snapshot
Ammonia as a case study for the spontaneous ionization of a simple hydrogen-bonded compound
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1038/nrg1249openalex-snapshot
The evolution of molecular markers — just a matter of fashion?
inferredcites →https://doi.org/10.1038/nrg1348openalex-snapshot
Microsatellites: simple sequences with complex evolution
inferredcites →https://doi.org/10.1038/nrg793openalex-snapshot
Plant transposable elements: where genetics meets genomics
inferredcites →https://doi.org/10.1038/srep03376openalex-snapshot
Combining next-generation sequencing and online databases for microsatellite development in non-model organisms
inferredcites →https://doi.org/10.1046/j.0962-1083.2001.01418.xopenalex-snapshot
Strategies for microsatellite isolation: a review
inferredcites →https://doi.org/10.1046/j.1365-294x.2003.01928.xopenalex-snapshot
Methods of parentage analysis in natural populations
inferredcites →https://doi.org/10.1046/j.1365-313x.1999.00392.xopenalex-snapshot
Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley
inferredcites →https://doi.org/10.1073/pnas.93.13.6470openalex-snapshot
Microsatellite spreading in the human genome: evolutionary mechanisms and structural implications.
inferredcites →https://doi.org/10.1080/00087114.1986.10797780openalex-snapshot
Unstable B-Chromosomes inGomphocerus Sibiricus(Orthoptera)
inferredcites →https://doi.org/10.1093/bioinformatics/btt054openalex-snapshot
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
inferredcites →https://doi.org/10.1093/bioinformatics/btt593openalex-snapshot
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
inferredcites →https://doi.org/10.1093/molbev/msg173openalex-snapshot
Recent Duplication of the Common Carp (Cyprinus carpio L.) Genome as Revealed by Analyses of Microsatellite Loci
inferredcites →https://doi.org/10.1093/molbev/mss168openalex-snapshot
Next-Generation Sequencing Reveals the Impact of Repetitive DNA Across Phylogenetically Closely Related Genomes of Orobanchaceae
inferredcites →https://doi.org/10.1093/nar/gks596openalex-snapshot
Primer3—new capabilities and interfaces
inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a111573openalex-snapshot
GENEPOP (Version 1.2): Population Genetics Software for Exact Tests and Ecumenicism
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003814openalex-snapshot
Mobile Elements and the Genesis of Microsatellites in Dipterans
inferredcites →https://doi.org/10.1111/1755-0998.12215openalex-snapshot
Stronger transferability but lower variability in transcriptomic‐ than in anonymous microsatellites: evidence from H ylid frogs
inferredcites →https://doi.org/10.1111/cla.12116openalex-snapshot
300 million years of diversification: elucidating the patterns of orthopteran evolution based on comprehensive taxon and gene sampling
inferredcites →https://doi.org/10.1111/j.1365-2583.2011.01124.xopenalex-snapshot
Long microsatellites and unusually high levels of genetic diversity in the Orthoptera
inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02163.xopenalex-snapshot
High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera:Parnassius apolloandEuphydryas aurinia
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05593.xopenalex-snapshot
Heterozygosity–fitness correlations in zebra finches: microsatellite markers can be better than their reputation
inferredcites →https://doi.org/10.1111/jen.12052openalex-snapshot
Characterization and comparison of microsatellite markers derived from genomic and expressed libraries for the desert locust
inferredcites →https://doi.org/10.1139/g01-113openalex-snapshot
Genome size and microsatellites: the effect of nuclear size on amplification potential
inferredcites →https://doi.org/10.1139/g97-055openalex-snapshot
Identification and characterization of microsatellites in Norway spruce (Picea abiesK.)
inferredcites →https://doi.org/10.1159/000079281openalex-snapshot
The distribution of B chromosomes across species
inferredcites →https://doi.org/10.1186/s12862-015-0419-9openalex-snapshot
What triggers colour change? Effects of background colour and temperature on the development of an alpine grasshopper
inferredcites →https://doi.org/10.1371/journal.pone.0023283openalex-snapshot
A Novel Approach for Mining Polymorphic Microsatellite Markers In Silico
inferredcites →https://doi.org/10.1371/journal.pone.0030953openalex-snapshot
Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake
inferredcites →https://doi.org/10.1371/journal.pone.0136465openalex-snapshot
Correction: Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake
inferredcites →https://doi.org/10.1651/09-3252.1openalex-snapshot
High Incidence of Cryptic Repeated Elements in Microsatellite Flanking Regions of Galatheid Genomes and Its Practical Implications for Molecular Marker Development
inferredcites →https://doi.org/10.1665/034.018.0111openalex-snapshot
Highly Polymorphic Microsatellites in the North American Snakeweed Grasshopper,Hesperotettix viridis
inferredcites →https://doi.org/10.2144/000113084openalex-snapshot
Fast, Cost-Effective Development of Species-Specific Microsatellite Markers by Genomic Sequencing
inferredcites →https://doi.org/10.2144/000113085openalex-snapshot
Microsatellite Discovery by Deep Sequencing of Enriched Genomic Libraries

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4781959openalex-extracted
Repetitive Element Expansions Contribute to Genome Size Gigantism in Pamphagidae (Orthoptera: Acridoidea)
inferred← citeshttps://doi.org/10.1016/j.ygeno.2024.110896openalex-snapshot
Repetitive element expansions contribute to genome size gigantism in Pamphagidae: A comparative study (Orthoptera, Acridoidea)
inferred← citeshttps://doi.org/10.1016/j.ygeno.2024.110971openalex-snapshot
Evolutionary dynamics of repetitive elements and their relationship with genome size in Acrididae
inferred← citeshttps://doi.org/10.1093/gbe/evaa119openalex-snapshot
Comparative Analysis of Genomic Repeat Content in Gomphocerine Grasshoppers Reveals Expansion of Satellite DNA and Helitrons in Species with Unusually Large Genomes
inferred← citeshttps://doi.org/10.1186/s12862-020-01630-7openalex-snapshot
The green-brown polymorphism of the club-legged grasshopper Gomphocerus sibiricus is heritable and appears genetically simple
inferred← citeshttps://doi.org/10.1186/s13071-024-06382-7openalex-snapshot
Development of microsatellite markers for the soft tick Ornithodoros phacochoerus
inferred← citeshttps://doi.org/10.1186/s13100-018-0127-2openalex-snapshot
Drosophila parasitoid wasps bears a distinct DNA transposon profile
inferred← citeshttps://doi.org/10.12688/f1000research.20052.1openalex-snapshot
Role of microsatellites in genetic analysis of Bombyx mori silkworm: a review
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3891482/v1openalex-snapshot
Development of microsatellite markers for Afrotropical Ornithodoros ticks
inferred← citeshttps://doi.org/10.3390/insects12090837openalex-snapshot
Comparative Analysis of Transposable Elements in Genus Calliptamus Grasshoppers Revealed That Satellite DNA Contributes to Genome Size Variation
inferred← citeshttps://doi.org/10.3390/life12040521openalex-snapshot
Satellitome Analysis and Transposable Elements Comparison in Geographically Distant Populations of Spodoptera frugiperda
inferred← citeshttps://doi.org/10.6084/m9.figshare.26264958openalex-snapshot
Additional file 1 of Development of microsatellite markers for the soft tick Ornithodoros phacochoerus
inferred← citeshttps://doi.org/10.6084/m9.figshare.26265127openalex-snapshot
Additional file 2 of Development of microsatellite markers for the soft tick Ornithodoros phacochoerus
inferred← citeshttps://doi.org/10.6084/m9.figshare.26748188openalex-snapshot
Additional file 3 of Development of microsatellite markers for the soft tick Ornithodoros phacochoerus
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