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Repetitive Element Expansions Contribute to Genome Size Gigantism in Pamphagidae (Orthoptera: Acridoidea)

https://doi.org/10.2139/ssrn.4781959

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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High‐throughput sequencing and graph‐based cluster analysis facilitate microsatellite development from a highly complex genome

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High-throughput analysis of satellite DNA in the grasshopper Pyrgomorpha conica reveals abundance of homologous and heterologous higher-order repeats

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Co-evolution between transposable elements and their hosts: a major factor in genome size evolution?

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A guided tour of large genome size in animals: what we know and where we are heading

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Transposable elements, gene creation and genome rearrangement in flowering plants

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Satellite DNA evolution: old ideas, new approaches

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Evolution of genome size: new approaches to an old problem

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The locust genome provides insight into swarm formation and long-distance flight

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Regulatory activities of transposable elements: from conflicts to benefits

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A unified classification system for eukaryotic transposable elements

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Sequencing technologies — the next generation

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How important are transposons for plant evolution?

inferredcites →https://doi.org/10.1038/s41467-020-15149-4openalex-extracted

Horizontal transfer and evolution of transposable elements in vertebrates

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Biopython: freely available Python tools for computational molecular biology and bioinformatics

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RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

inferredcites →https://doi.org/10.1093/bioinformatics/btu365openalex-extracted

Tedna: a transposable element de novo assembler

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Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis

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Comparative Analysis of Genomic Repeat Content in Gomphocerine Grasshoppers Reveals Expansion of Satellite DNA and Helitrons in Species with Unusually Large Genomes

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De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)

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Genome Size in North American Fireflies: Substantial Variation Likely Driven by Neutral Processes

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Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies

inferredcites →https://doi.org/10.1093/molbev/msu300openalex-extracted

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

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PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

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MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization

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The mode and tempo of genome size evolution in eukaryotes

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The Perennial Ryegrass GenomeZipper: Targeted Use of Genome Resources for Comparative Grass Genomics

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How complete are “complete” genome assemblies?—An avian perspective

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PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

inferredcites →https://doi.org/10.1111/j.0014-3820.2001.tb01268.xopenalex-extracted

PERSPECTIVE: TRANSPOSABLE ELEMENTS, PARASITIC DNA, AND GENOME EVOLUTION

inferredcites →https://doi.org/10.1111/syen.12417openalex-extracted

Genome size variation in butterflies (Insecta, Lepidotera, Papilionoidea): a thorough phylogenetic comparison

inferredcites →https://doi.org/10.1111/tpj.12054openalex-extracted

The holocentric species L uzula elegans shows interplay between centromere and large‐scale genome organization

inferredcites →https://doi.org/10.1126/science.1089370openalex-extracted

The Origins of Genome Complexity

inferredcites →https://doi.org/10.1126/science.161.3841.529openalex-extracted

Repeated Sequences in DNA

inferredcites →https://doi.org/10.1128/mmbr.00011-08openalex-extracted

Comparative Genomics and Molecular Dynamics of DNA Repeats in Eukaryotes

inferredcites →https://doi.org/10.1146/annurev.genet.40.110405.090448openalex-extracted

DNA Transposons and the Evolution of Eukaryotic Genomes

inferredcites →https://doi.org/10.1146/annurev.genom.8.080706.092416openalex-extracted

Repetitive Sequences in Complex Genomes: Structure and Evolution

inferredcites →https://doi.org/10.1186/1471-2164-8-132openalex-extracted

Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey

inferredcites →https://doi.org/10.1186/1471-2164-8-427openalex-extracted

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

inferredcites →https://doi.org/10.1186/1471-2164-9-518openalex-extracted

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

inferredcites →https://doi.org/10.1186/s12915-021-01216-9openalex-extracted

Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution

inferredcites →https://doi.org/10.1186/s12915-022-01441-wopenalex-extracted

Transposable element expansion and low-level piRNA silencing in grasshoppers may cause genome gigantism

inferredcites →https://doi.org/10.1186/s13100-018-0127-2openalex-extracted

Drosophila parasitoid wasps bears a distinct DNA transposon profile

inferredcites →https://doi.org/10.1371/journal.pone.0143424openalex-extracted

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae

inferredcites →https://doi.org/10.1371/journal.pone.0150719openalex-extracted

REPdenovo: Inferring De Novo Repeat Motifs from Short Sequence Reads

inferredcites →https://doi.org/10.3390/insects12090837openalex-extracted

Comparative Analysis of Transposable Elements in Genus Calliptamus Grasshoppers Revealed That Satellite DNA Contributes to Genome Size Variation

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Transposable Elements and Genome Size Variations in Plants

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