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Genomic, ecological, and morphological approaches to investigating species limits: A case study in modern taxonomy from Tropical Eastern Pacific surgeonfishes

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.5029openalex-snapshot

Genomic, ecological, and morphological approaches to investigating species limits: A case study in modern taxonomy from Tropical Eastern Pacific surgeonfishes

inferredcites →https://doi.org/10.1007/978-94-017-7499-4_16openalex-snapshot

Gene Flow in Coral Reef Organisms of the Tropical Eastern Pacific

inferredcites →https://doi.org/10.1007/978-94-017-7499-4_2openalex-snapshot

Revisiting the Cenozoic History and the Origin of the Eastern Pacific Coral Fauna

inferredcites →https://doi.org/10.1007/s00227-003-1174-9openalex-snapshot

Lack of mtDNA differentiation among hamlets ( Hypoplectrus , Serranidae)

inferredcites →https://doi.org/10.1007/s00227-006-0471-5openalex-snapshot

Genetic connectivity among color morphs and Pacific archipelagos for the flame angelfish, Centropyge loriculus

inferredcites →https://doi.org/10.1007/s00227-008-1119-4openalex-snapshot

Endemism and dispersal: comparative phylogeography of three surgeonfishes across the Hawaiian Archipelago

inferredcites →https://doi.org/10.1007/s00338-012-0907-yopenalex-snapshot

Twisted sister species of pygmy angelfishes: discordance between taxonomy, coloration, and phylogenetics

inferredcites →https://doi.org/10.1007/s003380050240openalex-snapshot

Biology and geology of eastern Pacific coral reefs

inferredcites →https://doi.org/10.1007/s12686-011-9548-7openalex-snapshot

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

inferredcites →https://doi.org/10.1016/b978-044451388-5/50002-3openalex-snapshot

Coral reefs of the Americas: An introduction to Latin American Coral Reefs

inferredcites →https://doi.org/10.1016/j.ympev.2008.05.011openalex-snapshot

Molecular ecology, speciation, and evolution of the reef fish genus Anisotremus

inferredcites →https://doi.org/10.1016/j.ympev.2008.05.024openalex-snapshot

Historical biogeography and speciation in the reef fish genus Haemulon (Teleostei: Haemulidae)

inferredcites →https://doi.org/10.1016/j.ympev.2010.02.014openalex-snapshot

Molecular phylogenetics and evolution of Holacanthus angelfishes (Pomacanthidae)

inferredcites →https://doi.org/10.1016/j.ympev.2011.04.018openalex-snapshot

Evolution of a Neotropical marine fish lineage (Subfamily Chaenopsinae, Suborder Blennioidei) based on phylogenetic analysis of combined molecular and morphological data

inferredcites →https://doi.org/10.1016/j.ympev.2011.09.028openalex-snapshot

Reconciling molecules and morphology: Molecular systematics and biogeography of Neotropical blennies (Acanthemblemaria)

inferredcites →https://doi.org/10.1016/j.ympev.2014.01.017openalex-snapshot

Evolution of pygmy angelfishes: Recent divergences, introgression, and the usefulness of color in taxonomy

inferredcites →https://doi.org/10.1016/j.ympev.2014.12.017openalex-snapshot

Skipping across the tropics: The evolutionary history of sawtail surgeonfishes (Acanthuridae: Prionurus)

inferredcites →https://doi.org/10.1016/j.ympev.2015.05.027openalex-snapshot

Genome-wide ultraconserved elements exhibit higher phylogenetic informativeness than traditional gene markers in percomorph fishes

inferredcites →https://doi.org/10.1016/j.ympev.2015.12.003openalex-snapshot

Improved resolution and a novel phylogeny for the Neotropical triplefin blennies (Teleostei: Tripterygiidae)

inferredcites →https://doi.org/10.1016/j.ympev.2016.01.010openalex-snapshot

Tempo and mode of speciation in Holacanthus angelfishes based on RADseq markers

inferredcites →https://doi.org/10.1016/j.ympev.2016.04.005openalex-snapshot

Regal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean

inferredcites →https://doi.org/10.1016/j.ympev.2017.12.028openalex-snapshot

Phylogenetics and geography of speciation in New World Halichoeres wrasses

inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot

Full-length transcriptome assembly from RNA-Seq data without a reference genome

inferredcites →https://doi.org/10.1046/j.1365-294x.2000.01020.xopenalex-snapshot

TCS: a computer program to estimate gene genealogies

inferredcites →https://doi.org/10.1046/j.1365-294x.2003.01946.xopenalex-snapshot

Genetic mosaic in a marine species flock

inferredcites →https://doi.org/10.1046/j.1365-294x.2003.01966.xopenalex-snapshot

Lack of mitochondrial genetic structure in hamlets (Hypoplectrusspp.): recent speciation or ongoing hybridization?

inferredcites →https://doi.org/10.1073/pnas.0502030102openalex-snapshot

Ernst Mayr and the modern concept of species

inferredcites →https://doi.org/10.1086/693856openalex-snapshot

Habitat Association Predicts Genetic Diversity and Population Divergence in Amazonian Birds

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btp696openalex-snapshot

pegas: an R package for population genetics with an integrated–modular approach

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btv646openalex-snapshot

PHYLUCE is a software package for the analysis of conserved genomic loci

inferredcites →https://doi.org/10.1093/genetics/147.2.915openalex-snapshot

Statistical Tests of Neutrality of Mutations Against Population Growth, Hitchhiking and Background Selection

inferredcites →https://doi.org/10.1093/genetics/155.2.945openalex-snapshot

Inference of Population Structure Using Multilocus Genotype Data

inferredcites →https://doi.org/10.1093/jhered/89.5.415openalex-snapshot

Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

inferredcites →https://doi.org/10.1093/sysbio/sys004openalex-snapshot

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

inferredcites →https://doi.org/10.1093/sysbio/syt061openalex-snapshot

Target Capture and Massively Parallel Sequencing of Ultraconserved Elements for Comparative Studies at Shallow Evolutionary Time Scales

inferredcites →https://doi.org/10.1098/2004.3005openalex-snapshot

Ecological speciation in tropical reef fishes

inferredcites →https://doi.org/10.1098/rspb.2015.1413openalex-snapshot

Replicated divergence in cichlid radiations mirrors a major vertebrate innovation

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1109/gce.2010.5676129openalex-snapshot

Creating the CIPRES Science Gateway for inference of large phylogenetic trees

inferredcites →https://doi.org/10.1111/brv.12048openalex-snapshot

Historical biogeography of the I sthmus of P anama

inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb00979.xopenalex-snapshot

CRYPTIC VICARIANCE IN GULF OF CALIFORNIA FISHES PARALLELS VICARIANT PATTERNS FOUND IN BAJA CALIFORNIA MAMMALS AND REPTILES

inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb00996.xopenalex-snapshot

MARINE RAIATIONS AT SMALL GEOGRAPHIC SCALES: SPECIATION IN NEOTROPICAL REEF GOBUIES (ELACATINUS)

inferredcites →https://doi.org/10.1111/j.1095-8649.2007.01770.xopenalex-snapshot

Speciation in coral‐reef fishes

inferredcites →https://doi.org/10.1111/j.1096-3642.2000.tb00166.xopenalex-snapshot

Biogeography of the Tropical Eastern Pacific: distribution and phylogeny of chaenopsid fishes

inferredcites →https://doi.org/10.1111/j.1365-2699.2006.01467.xopenalex-snapshot

Phylogeography of the flag cabrilla Epinephelus labriformis (Serranidae): implications for the biogeography of the Tropical Eastern Pacific and the early stages of speciation in a marine shore fish

inferredcites →https://doi.org/10.1111/j.1365-2699.2011.02613.xopenalex-snapshot

A realignment of marine biogeographic provinces with particular reference to fish distributions

inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot

Detecting the number of clusters of individuals using the software structure : a simulation study

inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03654.xopenalex-snapshot

Population genetic analyses ofHypoplectruscoral reef fishes provide evidence that local processes are operating during the early stages of marine adaptive radiations

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04188.xopenalex-snapshot

Colour variation is incongruent with mitochondrial lineages: cryptic speciation and subsequent diversification in a Gulf of California reef fish (Teleostei: Blennioidei)

inferredcites →https://doi.org/10.1111/j.1466-8238.2011.00698.xopenalex-snapshot

Measuring ecological niche overlap from occurrence and spatial environmental data

inferredcites →https://doi.org/10.1111/j.1471-8286.2004.00770.xopenalex-snapshot

genotype and genodive : two programs for the analysis of genetic diversity of asexual organisms

inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00917.xopenalex-snapshot

ALLOPATRIC DIVERGENCE AND SPECIATION IN CORAL REEF FISH: THE THREE-SPOT DASCYLLUS, DASCYLLUS TRIMACULATUS, SPECIES COMPLEX

inferredcites →https://doi.org/10.1111/j.1600-0587.2009.06142.xopenalex-snapshot

ENMTools: a toolbox for comparative studies of environmental niche models

inferredcites →https://doi.org/10.1111/jbi.12003openalex-snapshot

The historical biogeography of coral reef fishes: global patterns of origination and dispersal

inferredcites →https://doi.org/10.1111/jbi.12068openalex-snapshot

After continents divide: comparative phylogeography of reef fishes from the R ed S ea and I ndian O cean

inferredcites →https://doi.org/10.1111/jbi.12416openalex-snapshot

Shifting seas: the impacts of Pleistocene sea‐level fluctuations on the evolution of tropical marine taxa

inferredcites →https://doi.org/10.1111/jbi.12572openalex-snapshot

Blinded by the bright: a lack of congruence between colour morphs, phylogeography and taxonomy for a cosmopolitan Indo‐Pacific butterflyfish, Chaetodon auriga

inferredcites →https://doi.org/10.1111/jeb.13196openalex-snapshot

Phylogenomics of pike cichlids (Cichlidae: Crenicichla ): the rapid ecological speciation of an incipient species flock

inferredcites →https://doi.org/10.1111/mec.12494openalex-snapshot

Speciation in fishes

inferredcites →https://doi.org/10.1111/mec.12926openalex-snapshot

Genomic atolls of differentiation in coral reef fishes ( H ypoplectrusspp.,Serranidae)

inferredcites →https://doi.org/10.1111/mec.13129openalex-snapshot

Genomic signatures of geographic isolation and natural selection in coral reef fishes

inferredcites →https://doi.org/10.1111/mec.13937openalex-snapshot

Introgression and selection shaped the evolutionary history of sympatric sister‐species of coral reef fishes (genus: Haemulon)

inferredcites →https://doi.org/10.1155/2011/518516openalex-snapshot

Not All Larvae Stay Close to Home: Insights into Marine Population Connectivity with a Focus on the Brown Surgeonfish (Acanthurus nigrofuscus)

inferredcites →https://doi.org/10.1155/2011/839134openalex-snapshot

Phylogeography of the Pacific Blueline Surgeonfish, Acanthurus nigroris , Reveals High Genetic Connectivity and a Cryptic Endemic Species in the Hawaiian Archipelago

inferredcites →https://doi.org/10.1177/117693430500100003openalex-snapshot

Arlequin (version 3.0): An integrated software package for population genetics data analysis

inferredcites →https://doi.org/10.1186/1471-2148-12-57openalex-snapshot

Molecular phylogeny of grunts (Teleostei, Haemulidae), with an emphasis on the ecology, evolution, and speciation history of New World species

inferredcites →https://doi.org/10.1186/1471-2156-11-94openalex-snapshot

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

inferredcites →https://doi.org/10.1371/journal.pone.0042543openalex-snapshot

Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels

inferredcites →https://doi.org/10.1371/journal.pone.0065923openalex-snapshot

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)

inferredcites →https://doi.org/10.15517/rbt.v60i3.28356openalex-snapshot

Marine biodiversity of an Eastern Tropical Pacific oceanic island, Isla del Coco, Costa Rica

inferredcites →https://doi.org/10.1554/04-590openalex-snapshot

MARINE RADIATIONS AT SMALL GEOGRAPHIC SCALES: SPECIATION IN NEOTROPICAL REEF GOBIES (ELACATINUS)

inferredcites →https://doi.org/10.1641/b570707openalex-snapshot

Marine Ecoregions of the World: A Bioregionalization of Coastal and Shelf Areas

inferredcites →https://doi.org/10.1642/auk-15-232.1openalex-snapshot

Willet be one species or two? A genomic view of the evolutionary history of Tringa semipalmata

inferredcites →https://doi.org/10.1643/cg-04-106openalex-snapshot

Mitochondrial DNA and Color Pattern Variation in Three Western Atlantic Halichoeres (Labridae), with the Revalidation of Two Species

inferredcites →https://doi.org/10.18637/jss.v022.i04openalex-snapshot

The ade4 Package: Implementing the Duality Diagram for Ecologists

inferredcites →https://doi.org/10.1890/12-1358.1openalex-snapshot

MARSPEC: ocean climate layers for marine spatial ecology

inferredcites →https://doi.org/10.2307/1446970openalex-snapshot

Fishes of the Tropical Eastern Pacific

inferredcites →https://doi.org/10.2307/2265814openalex-snapshot

Gene Flow and Larval Duration in Seven Species of Fish from the Great Barrier Reef

inferredcites →https://doi.org/10.3354/meps07925openalex-snapshot

Shore fishes and biogeographic subdivisions of the Tropical Eastern Pacific

inferredcites →https://doi.org/10.3354/meps134015openalex-snapshot

Growth and longevity in acanthurid fishes; an analysis of otolith increments

inferredcites →https://doi.org/10.5281/zenodo.15929148openalex-snapshot

Catalogue of the fishes of lower California, in the Smithsonian Institution, collected by Mr. J. Xantus

inferredcites →https://doi.org/10.6079/j9illopenalex-snapshot

Illumiprocessor - software for Illumina read quality filtering

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.5053.1.1zenodo-depositor-declared

Checklist of marine and estuarine fishes from the Alaska–Yukon Border, Beaufort Sea, to Cabo San Lucas, Mexico

inferred← citeshttps://doi.org/10.1007/s00227-023-04299-wopenalex-snapshot

Comparative phylogeography and demographic histories of five widely distributed tropical eastern Pacific fishes

inferred← citeshttps://doi.org/10.1007/s00338-024-02473-0openalex-snapshot

Global patterns of herbivorous reef fish productivity: the role of Prionurus laticlavius in the Galápagos

inferred← citeshttps://doi.org/10.1038/s41467-026-73110-3openalex-snapshot

Ecological and genomic signatures of the convergent evolution of planktivory in fossil and living reef fishes over deep time

inferred← citeshttps://doi.org/10.1080/23802359.2019.1699465openalex-snapshot

The first complete mitochondrial genomes of sawtail surgeonfishes (Acanthuridae: Prionurus)

inferred← citeshttps://doi.org/10.1093/sysbio/syab057openalex-snapshot

Phylogenomic Species Delimitation Dramatically Reduces Species Diversity in an Antarctic Adaptive Radiation

inferred← citeshttps://doi.org/10.3897/zookeys.917.47444openalex-snapshot

Fine-scale species delimitation: speciation in process and periodic patterns in nudibranch diversity

inferred← citeshttps://doi.org/10.7773/cm.v47i4.3235openalex-snapshot

Ictiofauna de la bahía Maguey, Oaxaca, México, y su relación con la estructura del hábitat

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