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Exploring Bird Gut Microbiota Through Opportunistic Fecal Sampling: Ecological and Evolutionary Perspectives

https://doi.org/10.1002/ece3.71291
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Review: Toward management of urban ponds for freshwater biodiversity
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The gut microbiome of hooded cranes (Grus monacha) wintering at Shengjin Lake, China
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Effects of diet shift on the gut microbiota of the critically endangered Siberian Crane
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Variability of faecal microbiota and antibiotic resistance genes in flocks of migratory gulls and comparison with the surrounding environment
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Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine
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Faecal microbiota and antibiotic resistance genes in migratory waterbirds with contrasting habitat use
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The bacterial microbiota in the ceca of Capercaillie (Tetrao urogallus) differs between wild and captive birds
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Avian gut microbiomes taking flight
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Characterization of the cellulolytic complex (cellulosome) of Clostridium acetobutylicum
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Land-use change has host-specific influences on avian gut microbiomes
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Bacterial microbiota similarity between predators and prey in a blue tit trophic network
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Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
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Host specificity of the gut microbiome
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Demonstration of the potential of environmental DNA as a tool for the detection of avian species
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Habitat environments impacted the gut microbiome of long-distance migratory swan geese but central species conserved
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Diet induces parallel changes to the gut microbiota and problem solving performance in a wild bird
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Gut microbiome is affected by inter-sexual and inter-seasonal variation in diet for thick-billed murres (Uria lomvia)
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Specific gut bacterial responses to natural diets of tropical birds
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Effects of captivity and artificial breeding on microbiota in feces of the red-crowned crane (Grus japonensis)
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Metabarcoding reveals waterbird diet in a French Ramsar wetland: implications for ecosystem management
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Fifty years of criteria development for selecting wetlands of international importance
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Bacillusspp.as direct-fed microbial antibiotic alternatives to enhance growth, immunity, and gut health in poultry
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heatmaply: an R package for creating interactive cluster heatmaps for online publishing
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Stopover habitat selection drives variation in the gut microbiome composition and pathogen acquisition by migrating shorebirds
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A Guide to Dietary Pattern–Microbiome Data Integration
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Diet contributes to urban-induced alterations in gut microbiota: experimental evidence from a wild passerine
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Species-specific but not phylosymbiotic gut microbiomes of New Guinean passerine birds are shaped by diet and flight-associated gut modifications
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Clostridium phytofermentans sp. nov., a cellulolytic mesophile from forest soil.
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Non‐parametric multivariate analyses of changes in community structure
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VEGAN, a package of R functions for community ecology
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The detection of disease clustering and a generalized regression approach.
inferredcites →https://doi.org/10.1111/mec.15088openalex-snapshot
Human activity can influence the gut microbiota of Darwin's finches in the Galapagos Islands
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Evolutionary signal in the gut microbiomes of 74 bird species from Equatorial Guinea
inferredcites →https://doi.org/10.1111/mec.16762openalex-snapshot
Gut microbiome composition better reflects host phylogeny than diet diversity in breeding wood‐warblers
inferredcites →https://doi.org/10.1126/science.1224203openalex-snapshot
The Application of Ecological Theory Toward an Understanding of the Human Microbiome
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Temporal Variations in the Gut Microbiota of the Globally Endangered Sichuan Partridge (Arborophila rufipectus): Implications for Adaptation to Seasonal Dietary Change and Conservation
inferredcites →https://doi.org/10.1128/aem.58.5.1645-1649.1992openalex-snapshot
Characteristics of a new cellulolytic Clostridium sp. isolated from pig intestinal tract
inferredcites →https://doi.org/10.1128/mbio.02901-19openalex-snapshot
Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats
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An In silico approach for the evaluation of DNA barcodes
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Age-related differences in the cloacal microbiota of a wild bird species
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Population trends, threats, and conservation recommendations for waterbirds in China
inferredcites →https://doi.org/10.1186/s42523-021-00076-6openalex-snapshot
Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets
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Gut microbiome shifts with urbanization and potentially facilitates a zoonotic pathogen in a wading bird
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Diet and Feeding Habitats of Camargue Dabbling Ducks: What Has Changed Since the 1960s?
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R: A Language and Environment for Statistical Computing
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Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
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Differences in intestinal microflora of birds among different ecological types
inferredcites →https://doi.org/10.3389/fmars.2021.622883openalex-snapshot
Ecological Specialization Within a Carnivorous Fish Family Is Supported by a Herbivorous Microbiome Shaped by a Combination of Gut Traits and Specific Diet
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Characterizing the avian gut microbiota: membership, driving influences, and potential function
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The Low-Diversity Fecal Microbiota of the Critically Endangered Kākāpō Is Robust to Anthropogenic Dietary and Geographic Influences
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Comparative Analysis of Intestine Microbiota of Four Wild Waterbird Species
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Composition and Drivers of Gut Microbial Communities in Arctic-Breeding Shorebirds
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Microbiome Composition and Function in Aquatic Vertebrates: Small Organisms Making Big Impacts on Aquatic Animal Health
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Comparative Analysis of Fecal Microbiomes From Wild Waterbirds to Poultry, Cattle, Pigs, and Wastewater Treatment Plants for a Microbial Source Tracking Approach
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Incomplete Concordance Between Host Phylogeny and Gut Microbial Community in Tibetan Wetland Birds
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The avian gut microbiota: Diversity, influencing factors, and future directions
inferredcites →https://doi.org/10.3389/fmicb.2022.936601openalex-snapshot
Gut microbiomes of cyprinid fish exhibit host-species symbiosis along gut trait and diet
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Diet drives the gut microbiome composition and assembly processes in winter migratory birds in the Poyang Lake wetland, China
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Annual cycle variations in the gut microbiota of migratory black-necked cranes
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Rothia nasimurium as a Cause of Disease: First Isolation from Farmed Chickens
inferredcites →https://doi.org/10.5141/jefb.2011.044openalex-snapshot
The role of macrophytes in wetland ecosystems
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The influence of diet on gut microbiome and body mass dynamics in a capital-breeding migratory bird
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Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird ( Molothrus ater )

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