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TimeTree 5: An Expanded Resource for Species Divergence Times

https://doi.org/10.1093/molbev/msac174
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s10722-012-9844-4openalex-snapshot
Diversity and evolution of major Panax species revealed by scanning the entire chloroplast intergenic spacer sequences
inferredcites →https://doi.org/10.1016/j.biocon.2016.03.039openalex-snapshot
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inferredcites →https://doi.org/10.1016/j.cub.2018.05.055openalex-snapshot
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inferredcites →https://doi.org/10.1038/s41586-018-0273-1openalex-snapshot
An inverse latitudinal gradient in speciation rate for marine fishes
inferredcites →https://doi.org/10.1038/s41598-020-77381-8openalex-snapshot
MicroRNA retrocopies generated via L1-mediated retrotransposition in placental mammals help to reveal how their parental genes were transcribed
inferredcites →https://doi.org/10.1038/s41598-021-81784-6openalex-snapshot
Analyses of transcriptomes and the first complete genome of Leucocalocybe mongolica provide new insights into phylogenetic relationships and conservation
inferredcites →https://doi.org/10.1093/bioinformatics/btl505openalex-snapshot
TimeTree: a public knowledge-base of divergence times among organisms
inferredcites →https://doi.org/10.1093/bioinformatics/btr315openalex-snapshot
TimeTree2: species divergence times on the iPhone
inferredcites →https://doi.org/10.1093/database/baaa062openalex-snapshot
NCBI Taxonomy: a comprehensive update on curation, resources and tools
inferredcites →https://doi.org/10.1093/molbev/msv037openalex-snapshot
Tree of Life Reveals Clock-Like Speciation and Diversification
inferredcites →https://doi.org/10.1093/molbev/msx116openalex-snapshot
TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
inferredcites →https://doi.org/10.1093/molbev/msy133openalex-snapshot
Estimating TimeTrees with MEGA and the TimeTree Resource
inferredcites →https://doi.org/10.1098/rspb.2020.1071openalex-snapshot
Forest stratification shapes allometry and flight morphology of tropical butterflies
inferredcites →https://doi.org/10.1525/abt.2018.80.9.650openalex-snapshot
Time Travel and the Naturalist's Notebook: Vladimir Nabokov Meets the TimeTree of Life
inferredcites →https://doi.org/10.1525/abt.2020.82.9.586openalex-snapshot
Molecular Memories of a Cambrian Fossil

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1007/s00239-025-10286-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00239-025-10287-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00239-026-10311-wopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00335-026-10243-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s10577-026-09817-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s11427-023-2362-5openalex-snapshot
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Exploring the ecological and functional adaptations in cephalopod beak morphology
inferred← citeshttps://doi.org/10.1007/s13127-026-00697-2openalex-snapshot
Decoding the genomic tapestry: evolutionary and functional innovations in extrusome-bearing ciliates (Eukaryota, Alveolata) through multi-species comparative genomics
inferred← citeshttps://doi.org/10.1007/s13258-023-01420-7openalex-snapshot
Genome-wide identification and analysis of MIKC-type MADS-box genes expression in Chimonanthus salicifolius
inferred← citeshttps://doi.org/10.1007/s42977-026-00332-3openalex-snapshot
Comparative analysis of conserved non-coding elements identifies gene regulatory networks rewired during the water-to-land transition in vertebrates
inferred← citeshttps://doi.org/10.1007/s42995-024-00218-0openalex-snapshot
Dominance of transposable element-related satDNAs results in great complexity of “satDNA library” and invokes the extension towards “repetitive DNA library”
inferred← citeshttps://doi.org/10.1016/b978-0-443-16009-7.00012-8openalex-snapshot
Reproduction in agnathan fishes: Lampreys and hagfishes
inferred← citeshttps://doi.org/10.1016/b978-0-443-27380-3.00036-1openalex-snapshot
The primate brain connectivity bauplan and human-specific variations
inferred← citeshttps://doi.org/10.1016/bs.pbr.2022.10.004openalex-snapshot
Evolutionary and genomic perspectives of brain aging and neurodegenerative diseases
inferred← citeshttps://doi.org/10.1016/j.actbio.2025.12.052openalex-snapshot
Characterization of the egg glue protein from two belostomatidae family aquatic water bugs, Appasus japonicus and Lethocerus indicus
inferred← citeshttps://doi.org/10.1016/j.ade.2026.100023openalex-snapshot
Genomic basis of taxonomic conundrums: Insights from Tibetan loaches
inferred← citeshttps://doi.org/10.1016/j.algal.2026.104960openalex-snapshot
Comparative genomic and evolutionary insights into the sulfotransferase gene family in Saccharina sculpera
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.740858openalex-snapshot
Comparative transcriptomic and epigenomic analyses to identify the cold resistance-associated genes and disclose the regulatory mechanisms in tilapias
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.743565openalex-snapshot
Chromosome-level genome assembly and female-specific SNP marker identification of the Yangtze endemic bronze gudgeon (Coreius heterodon) with focus on conservation applications
inferred← citeshttps://doi.org/10.1016/j.avrs.2025.100321openalex-snapshot
Coping with extremes: diet and phylogeny shape gut microbiota in six passerine species inhabiting the Qinghai-Tibet Plateau
inferred← citeshttps://doi.org/10.1016/j.biochi.2026.07.012openalex-snapshot
Mechanistic determinants of fatty acid chain length in fatty acid synthase: The case of dairy fat
inferred← citeshttps://doi.org/10.1016/j.biocon.2026.112073openalex-snapshot
Wildlife on stamps reveal taxonomic bias in biodiversity representativeness in China
inferred← citeshttps://doi.org/10.1016/j.cbd.2023.101142openalex-snapshot
Gene family expansion analysis and identification of the histone family in Spodoptera frugiperda
inferred← citeshttps://doi.org/10.1016/j.cbd.2026.102016openalex-snapshot
Comparative genomics and adult-female transcriptomics prioritize physiological candidate pathways in the aquatic acentropine moth Paracymoriza distinctalis
inferred← citeshttps://doi.org/10.1016/j.cbpc.2024.109929openalex-snapshot
Sugar-coated survival: N-glycosylation as a unique bearded dragon venom resistance trait within Australian agamid lizards
inferred← citeshttps://doi.org/10.1016/j.cell.2024.05.007openalex-snapshot
Heterologous survey of 130 DNA transposons in human cells highlights their functional divergence and expands the genome engineering toolbox
inferred← citeshttps://doi.org/10.1016/j.cell.2024.05.033openalex-snapshot
Temporal dynamics of woolly mammoth genome erosion prior to extinction
inferred← citeshttps://doi.org/10.1016/j.cell.2024.12.001openalex-snapshot
Evolutionary study and structural basis of proton sensing by Mus GPR4 and Xenopus GPR4
inferred← citeshttps://doi.org/10.1016/j.cell.2025.01.023openalex-snapshot
Design of CoQ10 crops based on evolutionary history
inferred← citeshttps://doi.org/10.1016/j.cell.2025.01.030openalex-snapshot
The amphipod genome reveals population dynamics and adaptations to hadal environment
inferred← citeshttps://doi.org/10.1016/j.cell.2025.07.028openalex-snapshot
Engineering crop flower morphology facilitates robotization of cross-pollination and speed breeding
inferred← citeshttps://doi.org/10.1016/j.cell.2025.08.016openalex-snapshot
Extensive cross-species transmission of pathogens and antibiotic resistance genes in mammals neglected by public health surveillance
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.113950openalex-snapshot
Adaptive evolution of chloroplast division mechanisms during plant terrestrialization
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.114078openalex-snapshot
Vaginal microbiomes show ethnic evolutionary dynamics and positive selection of Lactobacillus adhesins driven by a long-term niche-specific process
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.114130openalex-snapshot
Evolution of the catalytic mechanism at the dawn of the Baeyer-Villiger monooxygenases
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115396openalex-snapshot
Programming of pluripotency and the germ line co-evolved from a Nanog ancestor
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115640openalex-snapshot
Genome of a stage-dependent cave-dwelling frog reveals the genetic mechanism of an extremely divergent biphasic life cycle
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115697openalex-snapshot
Haplotype-resolved genomes provide insights into the origins and functional significance of genome diversity in bivalves
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.116218openalex-snapshot
Endogenous viral elements in termite genomes reveal extensive diversity of deltaviruses and provide insights into their origins
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.116244openalex-snapshot
Evolution of drug-binding residues in eukaryotic ribosomes
inferred← citeshttps://doi.org/10.1016/j.celrep.2026.117037openalex-snapshot
Haplotype-resolved genome of hexaploid Solanum nigrum: Insights into origin, evolution, and steroidal glycoalkaloid biosynthesis
inferred← citeshttps://doi.org/10.1016/j.celrep.2026.117494openalex-snapshot
Chromosome-scale genomes of water lilies provide evolutionary insights into the aquatic adaptation of angiosperms
inferred← citeshttps://doi.org/10.1016/j.celrep.2026.117566openalex-snapshot
Cunninghamia lanceolata genome illuminates the evolutionary dynamics of gymnosperms
inferred← citeshttps://doi.org/10.1016/j.cj.2026.02.003openalex-snapshot
A haplotype-resolved genome assembly for Centella asiatica provides insights into its genome evolution and ursane-type triterpene accumulation
inferred← citeshttps://doi.org/10.1016/j.cobeha.2026.101657openalex-snapshot
The cellular basis of locomotor evolution: insights from larval insects
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2024.108107openalex-snapshot
Global and local genomic features together modulate the spontaneous single nucleotide mutation rate
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2026.109438openalex-snapshot
Mechanistic interpretability of a plant genomic foundation model: Data probes, causal interventions, and motif-grounded features
inferred← citeshttps://doi.org/10.1016/j.conb.2024.102927openalex-snapshot
“Neural correlates of social signaling in rodents: An acoustic perspective”
inferred← citeshttps://doi.org/10.1016/j.crmeth.2025.101293openalex-snapshot
African pygmy mouse iPSCs as a model for in vitro embryogenesis, interspecies chimerism, and blastocyst complementation
inferred← citeshttps://doi.org/10.1016/j.crmeth.2026.101460openalex-snapshot
ATACompass enables cross-species cell identity mapping for scATAC-seq without gene annotations
inferred← citeshttps://doi.org/10.1016/j.crmicr.2025.100368openalex-snapshot
Expansion of maltose/sucrose related transporters in Ascomycetes and their association with corresponding disaccharide utilization
inferred← citeshttps://doi.org/10.1016/j.crpvbd.2025.100319openalex-snapshot
Hidden Plasmodium diversity revealed in southeastern Asian passerines using next-generation amplicon sequencing
inferred← citeshttps://doi.org/10.1016/j.crpvbd.2026.100381openalex-snapshot
Uncovering a neglected canine filarioid in Asia: First evidence of Cercopithifilaria bainae in Thailand and a tale of the evolutionary history within the Cercopithifilaria lineage
inferred← citeshttps://doi.org/10.1016/j.csbj.2025.03.039openalex-snapshot
TetraRNA, a tetra-class machine learning model for deciphering the coding potential derivation of RNA world
inferred← citeshttps://doi.org/10.1016/j.csbj.2025.11.003openalex-snapshot
Evolutionary and structural bioinformatics identifies GPR89 as a conserved member of the LIMR protein superfamily
inferred← citeshttps://doi.org/10.1016/j.cub.2024.02.021openalex-snapshot
Parallel gene size and isoform expansion of ancient neuronal genes
inferred← citeshttps://doi.org/10.1016/j.cub.2024.06.034openalex-snapshot
A prominent vertical occipital white matter fasciculus unique to primate brains
inferred← citeshttps://doi.org/10.1016/j.cub.2024.07.010openalex-snapshot
Molecular mechanism of vivipary as revealed by the genomes of viviparous mangroves and non-viviparous relatives
inferred← citeshttps://doi.org/10.1016/j.cub.2024.11.059openalex-snapshot
Functional optimality underpins the repeated evolution of the extreme “saber-tooth” morphology
inferred← citeshttps://doi.org/10.1016/j.cub.2025.03.028openalex-snapshot
Genetic basis of an adaptive polymorphism controlling butterfly silver iridescence
inferred← citeshttps://doi.org/10.1016/j.cub.2025.11.026openalex-snapshot
The convergent genomic dynamism for aquatic adaptation in vascular plants
inferred← citeshttps://doi.org/10.1016/j.cub.2026.04.045openalex-snapshot
An X-to-autosome-to-Y chromosome amplified retrogene family functions in spermatids
inferred← citeshttps://doi.org/10.1016/j.dci.2026.105590openalex-snapshot
Glycine-rich antimicrobial peptides in basal insects: novel evolutionary insights from Archaeognatha and Zygentoma
inferred← citeshttps://doi.org/10.1016/j.dnarep.2026.103965openalex-snapshot
DNA methylation maintenance at heterochromatin
inferred← citeshttps://doi.org/10.1016/j.ecolmodel.2024.110721openalex-snapshot
The comparative energetics of branchiopods: Adaptations to volatile environments
inferred← citeshttps://doi.org/10.1016/j.envexpbot.2025.106202openalex-snapshot
Genome-wide identification of plant C2 domain-containing protein family and the role of OsNTMC2T2.2 under chilling stress in rice
inferred← citeshttps://doi.org/10.1016/j.envint.2024.108913openalex-snapshot
Fumarate reductase drives methane emissions in the genus Oryza through differential regulation of the rhizospheric ecosystem
inferred← citeshttps://doi.org/10.1016/j.foreco.2023.121560openalex-snapshot
Comparative transcriptomes of four Elm species provide insights into the genetic features and adaptive evolution of Ulmus spp.
inferred← citeshttps://doi.org/10.1016/j.foreco.2024.121747openalex-snapshot
Habitat heterogeneity shapes multiple diversity dimensions of fruit-feeding butterflies in an environmental gradient in the Brazilian Cerrado
inferred← citeshttps://doi.org/10.1016/j.freeradbiomed.2024.11.037openalex-snapshot
Molecular evolution of ovothiol biosynthesis in animal life reveals diversity of the natural antioxidant ovothiols in Cnidaria
inferred← citeshttps://doi.org/10.1016/j.fsi.2026.111515openalex-snapshot
Tracing the evolutionary history of small HERCs reveals an unprecedented expansion in fish related to virus infection
inferred← citeshttps://doi.org/10.1016/j.gde.2023.102059openalex-snapshot
Transposon waves at the water-to-land transition
inferred← citeshttps://doi.org/10.1016/j.gde.2024.102233openalex-snapshot
Structural variation in humans and our primate kin in the era of telomere-to-telomere genomes and pangenomics
inferred← citeshttps://doi.org/10.1016/j.gecco.2024.e03296openalex-snapshot
Chromosome-scale assembly and analysis of yellow Camellia (Camellia limonia) genome reveal plant adaptation mechanism and flavonoid biosynthesis in karst region
inferred← citeshttps://doi.org/10.1016/j.gene.2022.147118openalex-snapshot
Comparative genomic analysis provides insight into the phylogeny and potential mechanisms of adaptive evolution of Sphingobacterium sp. CZ-2
inferred← citeshttps://doi.org/10.1016/j.gene.2024.148671openalex-snapshot
Low depth sequencing reveals the critically endangered Batagur kachuga (Red-crowned roofed turtle) mitochondrial genome and its evolutionary implications
inferred← citeshttps://doi.org/10.1016/j.genrep.2026.102546openalex-snapshot
Origin and accelerated evolution of the red blood cell membrane protein ACKR1
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