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Evaluating the sampling effort for the metabarcoding‐based detection of fish environmental DNA in the open ocean

https://doi.org/10.1002/ece3.9921
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9781118445112.stat03432.pub2openalex-snapshot
Species Richness: Estimation and Comparison
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Permutational Multivariate Analysis of Variance ( PERMANOVA )
inferredcites →https://doi.org/10.1002/ece3.4802openalex-snapshot
Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution
inferredcites →https://doi.org/10.1002/ece3.4843openalex-snapshot
Species‐level biodiversity assessment using marine environmental DNA metabarcoding requires protocol optimization and standardization
inferredcites →https://doi.org/10.1002/ece3.6482openalex-snapshot
Marine water environmental DNA metabarcoding provides a comprehensive fish diversity assessment and reveals spatial patterns in a large oceanic area
inferredcites →https://doi.org/10.1002/ece3.8150openalex-snapshot
How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs?
inferredcites →https://doi.org/10.1002/ece3.9921openalex-snapshot
Evaluating the sampling effort for the metabarcoding‐based detection of fish environmental DNA in the open ocean
inferredcites →https://doi.org/10.1002/edn3.111openalex-snapshot
Comparing environmental metabarcoding and trawling survey of demersal fish communities in the Gulf of St. Lawrence, Canada
inferredcites →https://doi.org/10.1002/edn3.121openalex-snapshot
An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols
inferredcites →https://doi.org/10.1002/edn3.132openalex-snapshot
Environmental DNA metabarcoding for biodiversity monitoring of a highly diverse tropical fish community in a coral reef lagoon: Estimation of species richness and detection of habitat segregation
inferredcites →https://doi.org/10.1002/edn3.160openalex-snapshot
Environmental conditions influence eDNA particle size distribution in aquatic systems
inferredcites →https://doi.org/10.1002/edn3.279openalex-snapshot
Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a Critically Endangered elasmobranch
inferredcites →https://doi.org/10.1002/edn3.297openalex-snapshot
Leveraging eDNA metabarcoding to characterize nearshore fish communities in Southeast Alaska: Do habitat and tide matter?
inferredcites →https://doi.org/10.1002/edn3.74openalex-snapshot
Maximizing fish detection with eDNA metabarcoding
inferredcites →https://doi.org/10.1002/lol2.10213openalex-snapshot
Vertical stratification of environmental DNA in the open ocean captures ecological patterns and behavior of deep‐sea fishes
inferredcites →https://doi.org/10.1002/lom3.10459openalex-snapshot
Universal performance of benzalkonium chloride for the preservation of environmental DNA in seawater samples
inferredcites →https://doi.org/10.1007/s00227-017-3147-4openalex-snapshot
Seawater environmental DNA reflects seasonality of a coastal fish community
inferredcites →https://doi.org/10.1007/s10201-015-0457-4openalex-snapshot
Techniques for the practical collection of environmental DNA: filter selection, preservation, and extraction
inferredcites →https://doi.org/10.1007/s10592-015-0775-4openalex-snapshot
The ecology of environmental DNA and implications for conservation genetics
inferredcites →https://doi.org/10.1007/s10750-020-04260-8openalex-snapshot
Environmental DNA metabarcoding for freshwater bivalves biodiversity assessment: methods and results for the Western Palearctic (European sub-region)
inferredcites →https://doi.org/10.1007/s12562-018-1282-6openalex-snapshot
Dispersion and degradation of environmental DNA from caged fish in a marine environment
inferredcites →https://doi.org/10.1007/s13131-014-0490-xopenalex-snapshot
Composition of fish species in the Bering and Chukchi Seas and their responses to changes in the ecological environment
inferredcites →https://doi.org/10.1016/j.gene.2011.09.009openalex-snapshot
Evaluation of the 16S and 12S rRNA genes as universal markers for the identification of commercial fish species in South Africa
inferredcites →https://doi.org/10.1016/j.margen.2017.11.003openalex-snapshot
Metagenomic sequencing of environmental DNA reveals marine faunal assemblages from the West Antarctic Peninsula
inferredcites →https://doi.org/10.1016/j.scitotenv.2021.149175openalex-snapshot
The particle size distribution of environmental DNA varies with species and degradation
inferredcites →https://doi.org/10.1038/nclimate1539openalex-snapshot
Thermal tolerance and the global redistribution of animals
inferredcites →https://doi.org/10.1038/nclimate2647openalex-snapshot
Recent warming leads to a rapid borealization of fish communities in the Arctic
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1038/s41467-017-01121-2openalex-snapshot
Marine biogeographic realms and species endemicity
inferredcites →https://doi.org/10.1038/s41598-017-12501-5openalex-snapshot
Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
inferredcites →https://doi.org/10.1038/s41598-019-39399-5openalex-snapshot
Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers
inferredcites →https://doi.org/10.1038/s41598-019-40233-1openalex-snapshot
Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model
inferredcites →https://doi.org/10.1038/s41598-019-40977-wopenalex-snapshot
Improving eDNA yield and inhibitor reduction through increased water volumes and multi-filter isolation techniques
inferredcites →https://doi.org/10.1038/s41598-020-73444-yopenalex-snapshot
Shifting fish distributions in warming sub-Arctic oceans
inferredcites →https://doi.org/10.1038/s41598-020-77304-7openalex-snapshot
Field application of an improved protocol for environmental DNA extraction, purification, and measurement using Sterivex filter
inferredcites →https://doi.org/10.1038/s42003-018-0192-6openalex-snapshot
Persistence of environmental DNA in marine systems
inferredcites →https://doi.org/10.1038/srep40368openalex-snapshot
Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea
inferredcites →https://doi.org/10.1046/j.1365-294x.2002.01485.xopenalex-snapshot
Molecular barcodes for soil nematode identification
inferredcites →https://doi.org/10.1088/1748-9326/ac1010openalex-snapshot
Poleward shifts in marine fisheries under Arctic warming
inferredcites →https://doi.org/10.1093/icesjms/fsab242openalex-snapshot
A simulation approach to assessing bias in a fisheries self-sampling programme
inferredcites →https://doi.org/10.1098/rsos.150088openalex-snapshot
MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species
inferredcites →https://doi.org/10.1098/rspb.2015.1546openalex-snapshot
Climate change alters the structure of arctic marine food webs due to poleward shifts of boreal generalists
inferredcites →https://doi.org/10.1111/1755-0998.12338openalex-snapshot
Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data
inferredcites →https://doi.org/10.1111/1755-0998.12740openalex-snapshot
Genetic monitoring of open ocean biodiversity: An evaluation of DNA metabarcoding for processing continuous plankton recorder samples
inferredcites →https://doi.org/10.1111/1755-0998.12899openalex-snapshot
The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding
inferredcites →https://doi.org/10.1111/1755-0998.12982openalex-snapshot
Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement
inferredcites →https://doi.org/10.1111/1755-0998.13014openalex-snapshot
A guide to the application of Hill numbers to DNA‐based diversity analyses
inferredcites →https://doi.org/10.1111/1755-0998.13354openalex-snapshot
Complex interactions between environmental DNA (eDNA) state and water chemistries on eDNA persistence suggested by meta‐analyses
inferredcites →https://doi.org/10.1111/1755-0998.13709openalex-snapshot
Optimal sequence similarity thresholds for clustering of molecular operational taxonomic units in DNA metabarcoding studies
inferredcites →https://doi.org/10.1111/2041-210x.12206openalex-snapshot
Particle size distribution and optimal capture of aqueous macrobial eDNA
inferredcites →https://doi.org/10.1111/2041-210x.12595openalex-snapshot
Critical considerations for the application of environmental DNA methods to detect aquatic species
inferredcites →https://doi.org/10.1111/2041-210x.12613openalex-snapshot
iNEXT: an R package for rarefaction and extrapolation of species diversity ( H ill numbers)
inferredcites →https://doi.org/10.1111/2041-210x.12683openalex-snapshot
Comparison of capture and storage methods for aqueous macrobial eDNA using an optimized extraction protocol: advantage of enclosed filter
inferredcites →https://doi.org/10.1111/2041-210x.13276openalex-snapshot
Non‐specific amplification compromises environmental DNA metabarcoding with COI
inferredcites →https://doi.org/10.1111/2041-210x.13732openalex-snapshot
Multispecies site occupancy modelling and study design for spatially replicated environmental DNA metabarcoding
inferredcites →https://doi.org/10.1111/cobi.13183openalex-snapshot
Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity
inferredcites →https://doi.org/10.1111/cobi.13437openalex-snapshot
Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats
inferredcites →https://doi.org/10.1111/ddi.13142openalex-snapshot
GAPeDNA: Assessing and mapping global species gaps in genetic databases for eDNA metabarcoding
inferredcites →https://doi.org/10.1111/faf.12286openalex-snapshot
The sceptical optimist: challenges and perspectives for the application of environmental DNA in marine fisheries
inferredcites →https://doi.org/10.1111/j.1095-8649.2012.03464.xopenalex-snapshot
rfishbase: exploring, manipulating and visualizing FishBase data from R
inferredcites →https://doi.org/10.1111/j.1365-2486.2010.02311.xopenalex-snapshot
Footprints of climate change in the Arctic marine ecosystem
inferredcites →https://doi.org/10.1111/j.1466-8238.2009.00490.xopenalex-snapshot
Partitioning the turnover and nestedness components of beta diversity
inferredcites →https://doi.org/10.1111/j.1466-8238.2011.00756.xopenalex-snapshot
The relationship between species replacement, dissimilarity derived from nestedness, and nestedness
inferredcites →https://doi.org/10.1111/j.1541-0420.2005.00440.xopenalex-snapshot
Distance‐Based Tests for Homogeneity of Multivariate Dispersions
inferredcites →https://doi.org/10.1111/jfb.14383openalex-snapshot
Monitoring freshwater fish communities in large rivers using environmental DNA metabarcoding and a long‐term electrofishing survey
inferredcites →https://doi.org/10.1111/mec.13428openalex-snapshot
Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
inferredcites →https://doi.org/10.1111/mec.14350openalex-snapshot
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
inferredcites →https://doi.org/10.1111/oik.07202openalex-snapshot
A conceptual guide to measuring species diversity
inferredcites →https://doi.org/10.1126/science.1113399openalex-snapshot
Global Patterns of Predator Diversity in the Open Oceans
inferredcites →https://doi.org/10.1134/s0032945215020022openalex-snapshot
Fish fauna of the Chukchi Sea and perspectives of its commercial use
inferredcites →https://doi.org/10.1186/s12864-017-4428-5openalex-snapshot
Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing
inferredcites →https://doi.org/10.12688/f1000research.2-191.v1openalex-snapshot
taxize: taxonomic search and retrieval in R
inferredcites →https://doi.org/10.12688/f1000research.2-191.v2openalex-snapshot
taxize: taxonomic search and retrieval in R.
inferredcites →https://doi.org/10.1371/journal.pone.0041732openalex-snapshot
Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples
inferredcites →https://doi.org/10.1371/journal.pone.0076910openalex-snapshot
Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants
inferredcites →https://doi.org/10.1371/journal.pone.0086175openalex-snapshot
Using Environmental DNA to Census Marine Fishes in a Large Mesocosm
inferredcites →https://doi.org/10.1371/journal.pone.0157366openalex-snapshot
Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System
inferredcites →https://doi.org/10.1371/journal.pone.0165252openalex-snapshot
Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes
inferredcites →https://doi.org/10.1371/journal.pone.0176343openalex-snapshot
Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding
inferredcites →https://doi.org/10.1371/journal.pone.0189119openalex-snapshot
A systematic approach to evaluate the influence of environmental conditions on eDNA detection success in aquatic ecosystems
inferredcites →https://doi.org/10.14430/arctic4305openalex-snapshot
Nearshore Fish Assemblages of the Northeastern Chukchi Sea, Alaska
inferredcites →https://doi.org/10.14430/arctic68876openalex-snapshot
Pacific Salmon in the Rapidly Changing Arctic: Exploring Local Knowledge and Emerging Fisheries in Utqiaġvik and Nuiqsut, Alaska
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3897/mbmg.2.28963openalex-snapshot
Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method
inferredcites →https://doi.org/10.3897/mbmg.2.30457openalex-snapshot
Monitoring riverine fish communities through eDNA metabarcoding: determining optimal sampling strategies along an altitudinal and biodiversity gradient

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/mbmg.10.205755zenodo-depositor-declared
inferred← citeshttps://doi.org/10.1002/ece3.73254openalex-snapshot
Optimizing a Novel eDNA ‐Based Framework for Reef Fish Biodiversity Monitoring Using an Autonomous Filtration System and in situ Nanopore Sequencing
inferred← citeshttps://doi.org/10.1002/ece3.74259openalex-snapshot
Impact of Rainfall on Aquatic and Terrestrial Species Monitoring Using Riverine Environmental DNA
inferred← citeshttps://doi.org/10.1002/edn3.554openalex-snapshot
Primer set evaluation and sampling method assessment for the monitoring of fish communities in the North‐western part of the Mediterranean Sea through eDNA metabarcoding
inferred← citeshttps://doi.org/10.1002/edn3.70017openalex-snapshot
Optimizing eDNA Replication for Standardized Application in Lotic Systems in Aotearoa, New Zealand
inferred← citeshttps://doi.org/10.1002/edn3.70030openalex-snapshot
Validation of Environmental DNA for Estimating Proportional and Absolute Biomass
inferred← citeshttps://doi.org/10.1002/edn3.70068openalex-snapshot
Overwintering Fish Community in Ice‐Covered Environments in Hokkaido, Japan, Inferred From Environmental DNA
inferred← citeshttps://doi.org/10.1002/edn3.70082openalex-snapshot
Metazoan Diversity and Its Drivers: An eDNA Survey in the Pacific Gateway of a Changing Arctic Ocean
inferred← citeshttps://doi.org/10.1002/edn3.70187openalex-snapshot
Environmental DNA for Aquatic Monitoring: Impact of Diel Vertical Migration
inferred← citeshttps://doi.org/10.1007/s00227-025-04609-4openalex-snapshot
An innovative approach for marine macro-organism monitoring: methodology and future perspectives of environmental DNA (eDNA) technology
inferred← citeshttps://doi.org/10.1007/s00300-026-03517-7openalex-snapshot
Water-mass structuring of metazoan communities inferred from environmental DNA in the Chukchi Borderland during the summer sea-ice retreat period
inferred← citeshttps://doi.org/10.1007/s10872-025-00771-xopenalex-snapshot
Patterns in marine surface fish biodiversity and community composition detected by different eDNA metabarcoding sampling methods
inferred← citeshttps://doi.org/10.1016/j.marenvres.2025.107395openalex-snapshot
From nets to barcodes: Selecting suitable methods for assessing fish and prawn assemblages in seagrass meadows
inferred← citeshttps://doi.org/10.1016/j.marenvres.2025.107439openalex-snapshot
Stochastic processes drive patterns of fish assemblage diversity in the northwestern Pacific: Insights from environmental DNA
inferred← citeshttps://doi.org/10.1016/j.pocean.2026.103685openalex-snapshot
Opposite latitudinal biodiversity gradient in the open ocean generated by transition zones: Insights from fish distribution in the Northwest Pacific
inferred← citeshttps://doi.org/10.1016/j.polar.2025.101260openalex-snapshot
Towards an integrated assessment of the Arctic marine ecosystems in response to abrupt environmental changes: Contribution from the Arctic challenge for sustainability II (ArCS II) project
inferred← citeshttps://doi.org/10.1016/j.polar.2025.101267openalex-snapshot
Arctic Challenge for Sustainability II (ArCS II) project activity and results
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.166442openalex-snapshot
Comparison of concentration and extraction workflows for qPCR quantification of intI1 and vanA in untreated wastewater
inferred← citeshttps://doi.org/10.21203/rs.3.rs-7806039/v1openalex-snapshot
Impact of Rainfall on Aquatic and Terrestrial Species Monitoring Using Riverine Environmental DNA
inferred← citeshttps://doi.org/10.30852/sb.2024.2789openalex-snapshot
Global warming impacts on marine diversity and key indicator species in East Asia
inferred← citeshttps://doi.org/10.3389/fmars.2023.1193083openalex-snapshot
Distribution and habitat preference of polar cod (Boreogadus saida) in the Bering and Chukchi Seas inferred from species-specific detection of environmental DNA
inferred← citeshttps://doi.org/10.3389/fmars.2026.1848248openalex-snapshot
A multi-method approach for monitoring deep-sea fishes on a seamount in a marine protected area within the West Mariana Ridge
inferred← citeshttps://doi.org/10.3724/j.1007-6336.2026-0002openalex-snapshot
Study on fish diversity in the estuary areas of three main rivers and the Sanya Coral Reef Area in Hainan Island based on eDNA metabarcoding technology
inferred← citeshttps://doi.org/10.64898/2026.07.21.739767openalex-snapshot
Improving sensitivity in environmental DNA measurement by reconcentrating DNA extracts
inferred← citeshttps://doi.org/10.7717/peerj.16969openalex-snapshot
Drop it all: extraction-free detection of targeted marine species through optimized direct droplet digital PCR
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