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Application of eDNA metabarcoding in a fragmented lowland river: Spatial and methodological comparison of fish species composition

https://doi.org/10.1002/edn3.136
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/aqc.3010openalex-snapshot
Environmental DNA as a non‐invasive sampling tool to detect the spawning distribution of European anadromous shads ( Alosa spp.)
inferredcites →https://doi.org/10.1002/aqc.3601openalex-snapshot
Environmental DNA reveals the temporal and spatial extent of spawning migrations of European shad in a highly fragmented river basin
inferredcites →https://doi.org/10.1002/aqc.919openalex-snapshot
Case studies on eradicating the Asiatic cyprinid Pseudorasbora parva from fishing lakes in England to prevent their riverine dispersal
inferredcites →https://doi.org/10.1002/ece3.4013openalex-snapshot
Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt ( Triturus cristatus )
inferredcites →https://doi.org/10.1002/edn3.5openalex-snapshot
Temporal and spatial variation in distribution of fish environmental DNA in England’s largest lake
inferredcites →https://doi.org/10.1002/rra.3386openalex-snapshot
Species and river specific effects of river fragmentation on European anadromous fish species
inferredcites →https://doi.org/10.1007/s10530-009-9436-1openalex-snapshot
Towards the successful control of the invasive Pseudorasbora parva in the UK
inferredcites →https://doi.org/10.1007/s10750-004-1571-1openalex-snapshot
Ecology of Allis Shad Alosa alosa and Twaite Shad Alosa fallax in the Solway Firth, Scotland
inferredcites →https://doi.org/10.1007/s10750-018-3864-9openalex-snapshot
Factors influencing individual movements and behaviours of invasive European barbel Barbus barbus in a regulated river
inferredcites →https://doi.org/10.1016/j.biocon.2014.11.019openalex-snapshot
Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity
inferredcites →https://doi.org/10.1016/j.biocon.2014.11.023openalex-snapshot
Monitoring the near-extinct European weather loach in Denmark based on environmental DNA from water samples
inferredcites →https://doi.org/10.1016/j.biocon.2014.11.038openalex-snapshot
Quantifying effects of UV-B, temperature, and pH on eDNA degradation in aquatic microcosms
inferredcites →https://doi.org/10.1016/j.biocon.2015.12.023openalex-snapshot
Understanding environmental DNA detection probabilities: A case study using a stream-dwelling char Salvelinus fontinalis
inferredcites →https://doi.org/10.1016/j.biocon.2016.03.010openalex-snapshot
Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system
inferredcites →https://doi.org/10.1016/j.ecolind.2015.11.022openalex-snapshot
The use of environmental DNA of fishes as an efficient method of determining habitat connectivity
inferredcites →https://doi.org/10.1016/j.fishres.2018.12.006openalex-snapshot
Refinement of acoustic-tagging protocol for twaite shad Alosa fallax (Lacépède), a species sensitive to handling and sedation
inferredcites →https://doi.org/10.1016/j.geomorph.2015.07.027openalex-snapshot
Immediate changes in stream channel geomorphology, aquatic habitat, and fish assemblages following dam removal in a small upland catchment
inferredcites →https://doi.org/10.1016/j.ijpara.2017.11.002openalex-snapshot
Phylogenetic and environmental DNA insights into emerging aquatic parasites: implications for risk management
inferredcites →https://doi.org/10.1016/s0006-3207(03)00190-3openalex-snapshot
Absent or undetected? Effects of non-detection of species occurrence on wildlife–habitat models
inferredcites →https://doi.org/10.1021/es404734popenalex-snapshot
Environmental Conditions Influence eDNA Persistence in Aquatic Systems
inferredcites →https://doi.org/10.1023/a:1011036127663openalex-snapshot
A Theoretical Study of River Fragmentation by Dams and its Effects on White Sturgeon Populations
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1038/s41598-017-05223-1openalex-snapshot
Controls on eDNA movement in streams: Transport, Retention, and Resuspension
inferredcites →https://doi.org/10.1051/kmae/2017009openalex-snapshot
Spatial variability in the growth of invasive European barbel Barbus barbus in the River Severn basin, revealed using anglers as citizen scientists
inferredcites →https://doi.org/10.1080/23308249.2016.1233166openalex-snapshot
Sea LampreyPetromyzon marinusBiology and Management Across Their Native and Invasive Ranges: Promoting Conservation by Knowledge Transfer
inferredcites →https://doi.org/10.1093/nar/gky379openalex-snapshot
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
inferredcites →https://doi.org/10.1098/rsos.150088openalex-snapshot
MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species
inferredcites →https://doi.org/10.1111/1755-0998.12285openalex-snapshot
Distance, flow and PCR inhibition: e DNA dynamics in two headwater streams
inferredcites →https://doi.org/10.1111/1755-0998.12402openalex-snapshot
Tag jumps illuminated – reducing sequence‐to‐sample misidentifications in metabarcoding studies
inferredcites →https://doi.org/10.1111/2041-210x.12595openalex-snapshot
Critical considerations for the application of environmental DNA methods to detect aquatic species
inferredcites →https://doi.org/10.1111/eff.12408openalex-snapshot
Quantifying trophic interactions and niche sizes of juvenile fishes in an invaded riverine cyprinid fish community
inferredcites →https://doi.org/10.1111/eff.12456openalex-snapshot
Spatial variability in the somatic growth of pikeperch Sander lucioperca, an invasive piscivorous fish
inferredcites →https://doi.org/10.1111/faf.12373openalex-snapshot
Effective monitoring of freshwater fish
inferredcites →https://doi.org/10.1111/fme.12176openalex-snapshot
Assessment of non‐native fish dispersal from a freshwater aquaculture site
inferredcites →https://doi.org/10.1111/fwb.13064openalex-snapshot
Long‐term effects of flow regulation by dams simplify fish functional diversity
inferredcites →https://doi.org/10.1111/fwb.13094openalex-snapshot
Comparing local‐ and regional‐scale estimations of the diversity of stream fish using eDNA metabarcoding and conventional observation methods
inferredcites →https://doi.org/10.1111/fwb.13326openalex-snapshot
Predicting the contributions of novel marine prey resources from angling and anadromy to the diet of a freshwater apex predator
inferredcites →https://doi.org/10.1111/j.1095-8649.1988.tb05568.xopenalex-snapshot
The biology of the twaite shad, Alosa fallax fallax (Lacépède), in the Severn Estuary
inferredcites →https://doi.org/10.1111/j.1095-8649.2006.01218.xopenalex-snapshot
On the occurrence of the Asiatic cyprinid Pseudorasbora parva in the Netherlands
inferredcites →https://doi.org/10.1111/j.1095-8649.2010.02775.xopenalex-snapshot
Climate change and the green energy paradox: the consequences for twaite shad Alosa fallax from the River Severn, U.K.
inferredcites →https://doi.org/10.1111/j.1365-2400.2007.00574.xopenalex-snapshot
Development of fish‐based methods for the assessment of ecological status in English and Welsh rivers
inferredcites →https://doi.org/10.1111/j.1365-2664.2005.01098.xopenalex-snapshot
Designing occupancy studies: general advice and allocating survey effort
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05542.xopenalex-snapshot
Environmental DNA
inferredcites →https://doi.org/10.1111/j.1467-2979.2010.00361.xopenalex-snapshot
Pan‐continental invasion ofPseudorasbora parva: towards a better understanding of freshwater fish invasions
inferredcites →https://doi.org/10.1111/jfb.14053openalex-snapshot
Environmental DNA metabarcoding as an effective and rapid tool for fish monitoring in canals
inferredcites →https://doi.org/10.1111/mec.13428openalex-snapshot
Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
inferredcites →https://doi.org/10.1111/mec.13660openalex-snapshot
Environmental DNA metabarcoding of lake fish communities reflects long‐term data from established survey methods
inferredcites →https://doi.org/10.1111/mec.14350openalex-snapshot
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
inferredcites →https://doi.org/10.1111/mec.14395openalex-snapshot
Environmental DNA detection of rare and invasive fish species in two Great Lakes tributaries
inferredcites →https://doi.org/10.1139/cjfas-2012-0478openalex-snapshot
Detection of Asian carp DNA as part of a Great Lakes basin-wide surveillance program
inferredcites →https://doi.org/10.1139/cjfas-2016-0306openalex-snapshot
Fish community assessment with eDNA metabarcoding: effects of sampling design and bioinformatic filtering
inferredcites →https://doi.org/10.1139/f05-233openalex-snapshot
Effects of reservoir connectivity on stream fish assemblages in the Great Plains
inferredcites →https://doi.org/10.1371/journal.pone.0035868openalex-snapshot
Estimation of Fish Biomass Using Environmental DNA
inferredcites →https://doi.org/10.1371/journal.pone.0059520openalex-snapshot
Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity
inferredcites →https://doi.org/10.1371/journal.pone.0088786openalex-snapshot
Transport Distance of Invertebrate Environmental DNA in a Natural River
inferredcites →https://doi.org/10.1371/journal.pone.0157366openalex-snapshot
Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System
inferredcites →https://doi.org/10.1577/1548-8659(2001)130<0620:aatepo>2.0.co;2openalex-snapshot
An Approach to Estimate Probability of Presence and Richness of Fish Species
inferredcites →https://doi.org/10.1577/m06-001.1openalex-snapshot
Effects of Dam Removal on Fish Assemblage Structure and Spatial Distributions in the Baraboo River, Wisconsin
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/natureconservation.65.190071zenodo-depositor-declared
Assessing the use of inland wetlands by fishes in the Lower Tagus Basin, Portugal
inferred← citeshttps://doi.org/10.1002/edn3.241openalex-snapshot
Biodiversity assessment across a dynamic riverine system: A comparison of eDNA metabarcoding versus traditional fish surveying methods
inferred← citeshttps://doi.org/10.1002/edn3.486openalex-snapshot
High frequency environmental DNA metabarcoding provides rapid and effective monitoring of fish community dynamics
inferred← citeshttps://doi.org/10.1007/978-3-031-75830-0_15openalex-snapshot
Environmental DNA (eDNA) Metabarcoding: A Molecular Tool for Seafood Authentication and Conservation of Endangered Species
inferred← citeshttps://doi.org/10.1007/s00267-026-02551-9openalex-snapshot
A Review of Environmental DNA (eDNA)-Based Detection of Aquatic Denizens and Water‑Borne Pathogens in Wetlands: Recent Trends and Future Perspectives
inferred← citeshttps://doi.org/10.1016/j.ecoinf.2026.103643openalex-snapshot
Optical imaging and machine learning to identify and enumerate early developmental stages of fish species
inferred← citeshttps://doi.org/10.1016/j.ecolind.2021.107952openalex-snapshot
Congruency between two traditional and eDNA-based sampling methods in characterising taxonomic and trait-based structure of fish communities and community-environment relationships in lentic environment
inferred← citeshttps://doi.org/10.1016/j.ecolind.2025.113406openalex-snapshot
Fish diversity assessment and semi-quantitative biomass estimation through metabarcoding of environmental DNA
inferred← citeshttps://doi.org/10.1016/j.envadv.2023.100370openalex-snapshot
Applications of environmental DNA (eDNA) to detect subterranean and aquatic invasive species: A critical review on the challenges and limitations of eDNA metabarcoding
inferred← citeshttps://doi.org/10.1016/j.envres.2025.121238openalex-snapshot
Freshwater fish community assessment using eDNA metabarcoding vs. capture-based methods: Differences in efficiency and resolution coupled to habitat and ecology
inferred← citeshttps://doi.org/10.1016/j.gecco.2025.e03963openalex-snapshot
Fish diversity and continuous sampling strategy in the lower Hanjiang River: Comparing the eDNA with the traditional methods
inferred← citeshttps://doi.org/10.1016/j.jenvman.2025.128203openalex-snapshot
Environmental DNA-based tracking and mapping reveal process-driven seasonal dynamics in fish diversity and community assemblages
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2023.115430openalex-snapshot
Environmental DNA metabarcoding serves as a promising method for aquatic species monitoring and management: A review focused on its workflow, applications, challenges and prospects
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.162322openalex-snapshot
Aquatic environmental DNA: A review of the macro-organismal biomonitoring revolution
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.173242openalex-snapshot
Environmental DNA metabarcoding reflects spatiotemporal fish community shifts in the Scheldt estuary
inferred← citeshttps://doi.org/10.1080/15627020.2023.2274334openalex-snapshot
The status of COI and 12S rRNA DNA barcode reference libraries for freshwater fish in South Africa: Implications for future eDNA projects
inferred← citeshttps://doi.org/10.1111/eva.13561openalex-snapshot
Seascape genomics reveals limited dispersal and suggests spatially varying selection among European populations of sea lamprey ( Petromyzon marinus )
inferred← citeshttps://doi.org/10.11614/ksl.2025.58.3.308openalex-snapshot
Fish Biodiversity Assessment via Environmental DNA in Korean Lakes
inferred← citeshttps://doi.org/10.25225/jvb.22068openalex-snapshot
A rapid assessment of non-native fish distributions in two English river basins using environmental DNA
inferred← citeshttps://doi.org/10.3389/fenvs.2022.725360openalex-snapshot
A Review of Environmental DNA Field and Laboratory Protocols Applied in Fish Ecology and Environmental Health
inferred← citeshttps://doi.org/10.3389/fevo.2022.913279openalex-snapshot
Similarities and Differences in Fish Community Composition Accessed by Electrofishing, Gill Netting, Seining, Trawling, and Water eDNA Metabarcoding in Temperate Reservoirs
inferred← citeshttps://doi.org/10.3389/fmars.2026.1741931openalex-snapshot
Diversity and distribution assessment of elasmobranchs in a shallow estuarine lagoon using environmental DNA
inferred← citeshttps://doi.org/10.3390/fishes9120477openalex-snapshot
Ease and Limitations in Using Environmental DNA to Track the Spread of Invasive Host–Parasite Complexes: A Case Study of the Freshwater Fish Pseudorasbora parva and the Cryptic Fungal Parasite Sphaerothecum destruens
inferred← citeshttps://doi.org/10.3390/w15050949openalex-snapshot
An Overview of Ecological Indicators of Fish to Evaluate the Anthropogenic Pressures in Aquatic Ecosystems: From Traditional to Innovative DNA-Based Approaches
inferred← citeshttps://doi.org/10.5204/thesis.eprints.237734openalex-snapshot
Detecting the invasive jaguar cichlid in the pioneer river using a non-invasive environmental DNA approach: Implications for management
inferred← citeshttps://doi.org/10.6027/temanord2023-505openalex-snapshot
DNA metabarcoding - Guidelines to monitor phytoplankton diversity and distribution in marine and brackish waters
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