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The Importance of Within‐Log Sampling Replication in Bark‐ and Wood‐Inhabiting Fungal Metabarcoding Studies

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.11660openalex-snapshot

Drivers of wood‐inhabiting fungal diversity in European and Oriental beech forests

inferredcites →https://doi.org/10.1006/lich.1996.0043openalex-snapshot

Epiphyte Flora and Diversity on Basal Trunks of Six Old-Growth Forest Tree Species in Southern and Middle Boreal Finland

inferredcites →https://doi.org/10.1007/978-3-319-73524-5openalex-snapshot

The Plant Stem: A Microscopic Aspect

inferredcites →https://doi.org/10.1007/s004680050058openalex-snapshot

Variations in bark acidity and conductivity over the trunk length of silver fir and Norway spruce

inferredcites →https://doi.org/10.1007/s10342-008-0222-xopenalex-snapshot

Antifungal effect of bark extracts from some European tree species

inferredcites →https://doi.org/10.1007/s10531-004-4284-xopenalex-snapshot

Cryptogam communities on decaying deciduous wood – does tree species diversity matter?

inferredcites →https://doi.org/10.1007/s10531-011-0176-zopenalex-snapshot

The importance of timing and number of surveys in fungal biodiversity research

inferredcites →https://doi.org/10.1007/s11557-006-0115-7openalex-snapshot

Species richness and substrate specificity of lignicolous fungi in the canopy of a temperate, mixed deciduous forest

inferredcites →https://doi.org/10.1007/s11557-023-01901-9openalex-snapshot

Tackling fungal diversity in lichen symbioses: molecular and morphological data recognize new lineages in Chaetothyriales (Eurotiomycetes, Ascomycota)

inferredcites →https://doi.org/10.1007/s12223-013-0278-yopenalex-snapshot

First evidence for seasonal fluctuations in lichen- and bark-colonising fungal communities

inferredcites →https://doi.org/10.1007/s13199-020-00714-8openalex-snapshot

Towards a digital key to the lichens of Italy

inferredcites →https://doi.org/10.1007/s13225-011-0117-xopenalex-snapshot

Pleosporales

inferredcites →https://doi.org/10.1007/s13225-016-0374-9openalex-snapshot

Turbo-taxonomy to assemble a megadiverse lichen genus: seventy new species of Cora (Basidiomycota: Agaricales: Hygrophoraceae), honouring David Leslie Hawksworth’s seventieth birthday

inferredcites →https://doi.org/10.1016/b978-0-12-382034-1.00011-6openalex-snapshot

Fungi, Ecosystems, and Global Change

inferredcites →https://doi.org/10.1016/b978-012509551-8/50015-5openalex-snapshot

ENDOPHYTIC FUNGI

inferredcites →https://doi.org/10.1016/bs.adgen.2016.01.001openalex-snapshot

Diversity of Entomopathogenic Fungi

inferredcites →https://doi.org/10.1016/j.biocon.2010.01.016openalex-snapshot

Rot holes create key microhabitats for epiphytic lichens and bryophytes on beech (Fagus sylvatica)

inferredcites →https://doi.org/10.1016/j.biocon.2024.110696openalex-snapshot

How to best detect threatened deadwood fungi – Comparing metabarcoding and fruit body surveys

inferredcites →https://doi.org/10.1016/j.ecolind.2010.03.013openalex-snapshot

The vertical gradient of bark pH and epiphytic macrolichen biota in relation to alkaline air pollution

inferredcites →https://doi.org/10.1016/j.ecolind.2018.11.061openalex-snapshot

Is targeted community DNA metabarcoding suitable for biodiversity inventories of lichen-forming fungi?

inferredcites →https://doi.org/10.1016/j.fecs.2024.100254openalex-snapshot

Ghost species form an important component of the epiphytic lichens in temperate forests

inferredcites →https://doi.org/10.1016/j.foreco.2004.10.058openalex-snapshot

Modelling bark thickness of Picea abies with taper curves

inferredcites →https://doi.org/10.1016/j.foreco.2011.10.015openalex-snapshot

Linking fungi, trees, and hole-using birds in a Neotropical tree-cavity network: Pathways of cavity production and implications for conservation

inferredcites →https://doi.org/10.1016/j.foreco.2013.11.019openalex-snapshot

The effects of forest management on wood-inhabiting fungi occupying dead wood of different diameter fractions

inferredcites →https://doi.org/10.1016/j.foreco.2015.12.017openalex-snapshot

Fungal communities in Norway spruce stumps along a latitudinal gradient in Sweden

inferredcites →https://doi.org/10.1016/j.foreco.2017.12.021openalex-snapshot

Life after tree death: Does restored dead wood host different fungal communities to natural woody substrates?

inferredcites →https://doi.org/10.1016/j.foreco.2021.119381openalex-snapshot

The factors and scales shaping fungal assemblages in fallen spruce trunks: A DNA metabarcoding study

inferredcites →https://doi.org/10.1016/j.foreco.2022.120529openalex-snapshot

Growth form matters – Crustose lichens on dead wood are sensitive to forest management

inferredcites →https://doi.org/10.1016/j.funbio.2015.04.007openalex-snapshot

DNA barcoding of fungi causing infections in humans and animals

inferredcites →https://doi.org/10.1016/j.funeco.2010.01.001openalex-snapshot

Identifying wood-inhabiting fungi with 454 sequencing – what is the probability that BLAST gives the correct species?

inferredcites →https://doi.org/10.1016/j.funeco.2015.06.006openalex-snapshot

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

inferredcites →https://doi.org/10.1016/j.funeco.2015.08.008openalex-snapshot

Surveying wood-inhabiting fungi: Most molecularly detected polypore species form fruit-bodies within short distances

inferredcites →https://doi.org/10.1016/j.funeco.2015.09.008openalex-snapshot

Communities of wood-inhabiting fungi in dead pine logs along a geographical gradient in Japan

inferredcites →https://doi.org/10.1016/j.funeco.2016.06.007openalex-snapshot

Detailed information on fruiting phenology provides new insights on wood-inhabiting fungal detection

inferredcites →https://doi.org/10.1016/j.funeco.2017.03.003openalex-snapshot

Resource use of wood-inhabiting fungi in different boreal forest types

inferredcites →https://doi.org/10.1016/j.funeco.2017.12.005openalex-snapshot

Decaying Picea abies log bark hosts diverse fungal communities

inferredcites →https://doi.org/10.1016/j.funeco.2019.08.007openalex-snapshot

Morphological traits predict host-tree specialization in wood-inhabiting fungal communities

inferredcites →https://doi.org/10.1016/j.funeco.2022.101151openalex-snapshot

Wood-decay type and fungal guild dominance across a North American log transplant experiment

inferredcites →https://doi.org/10.1016/j.funeco.2023.101274openalex-snapshot

ITS alchemy: On the use of ITS as a DNA marker in fungal ecology

inferredcites →https://doi.org/10.1016/j.funeco.2024.101331openalex-snapshot

Highly heterogeneous mycobiota shape fungal diversity in two globally distributed lichens

inferredcites →https://doi.org/10.1016/j.funeco.2024.101360openalex-snapshot

Microhabitat diversity – A crucial factor shaping macrofungal communities and morphological trait expression in dead wood

inferredcites →https://doi.org/10.1016/j.mib.2017.06.008openalex-snapshot

Microbial activity and the dynamics of ecosystem processes in forest soils

inferredcites →https://doi.org/10.1016/j.ympev.2016.01.015openalex-snapshot

Early-diverging wood-decaying fungi detected using three complementary sampling methods

inferredcites →https://doi.org/10.1016/s0378-1127(98)00399-5openalex-snapshot

Molecular identification of wood-inhabiting fungi in an unmanaged Picea abies forest in Sweden

inferredcites →https://doi.org/10.1017/cbo9781139025843openalex-snapshot

Biodiversity in Dead Wood

inferredcites →https://doi.org/10.1017/cbo9781139025843.003openalex-snapshot

Wood decomposition

inferredcites →https://doi.org/10.1017/s0024282907006937openalex-snapshot

Reproductive strategy and the compositional dynamics of crustose lichen communities on aspen (Populus tremula L.) in Scotland

inferredcites →https://doi.org/10.1017/s0024282912000564openalex-snapshot

Lichens on Picea abies and Pinus sylvestris – from tree bottom to the top

inferredcites →https://doi.org/10.1017/s0024282917000615openalex-snapshot

Thamnolia tundrae sp. nov., a cryptic species and putative glacial relict

inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot

DADA2: High-resolution sample inference from Illumina amplicon data

inferredcites →https://doi.org/10.1038/s41396-018-0314-7openalex-snapshot

Bridging reproductive and microbial ecology: a case study in arbuscular mycorrhizal fungi

inferredcites →https://doi.org/10.1038/s41559-017-0156openalex-snapshot

Diversity begets diversity in competition for space

inferredcites →https://doi.org/10.1038/s41597-024-03410-0openalex-snapshot

Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA

inferredcites →https://doi.org/10.1038/s41598-017-14978-6openalex-snapshot

Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities

inferredcites →https://doi.org/10.1038/s41598-021-90877-1openalex-snapshot

Fungal diversity driven by bark features affects phorophyte preference in epiphytic orchids from southern China

inferredcites →https://doi.org/10.1038/s41598-021-93900-7openalex-snapshot

Wood-inhabiting fungal responses to forest naturalness vary among morpho-groups

inferredcites →https://doi.org/10.1073/pnas.1403517111openalex-snapshot

A single macrolichen constitutes hundreds of unrecognized species

inferredcites →https://doi.org/10.1073/pnas.1909166117openalex-snapshot

A trait-based understanding of wood decomposition by fungi

inferredcites →https://doi.org/10.1080/02827581.2021.1996628openalex-snapshot

Identifying old Norway spruce and Scots pine trees by morphological traits and site characteristics

inferredcites →https://doi.org/10.1080/17550874.2010.505966openalex-snapshot

Taxon- compared with trait-based analysis of epiphytes, and the role of tree species and tree age in community composition

inferredcites →https://doi.org/10.1093/bioinformatics/btt509openalex-snapshot

Infernal 1.1: 100-fold faster RNA homology searches

inferredcites →https://doi.org/10.1093/femsec/fiv012openalex-snapshot

Diverse ecological roles within fungal communities in decomposing logs of Picea abies

inferredcites →https://doi.org/10.1098/rspb.2019.1744openalex-snapshot

Bark coverage shifts assembly processes of microbial decomposer communities in dead wood

inferredcites →https://doi.org/10.1101/603217openalex-snapshot

Joint species distribution modelling with HMSC-R

inferredcites →https://doi.org/10.1111/1365-2745.12085openalex-snapshot

Specialist species of wood‐inhabiting fungi struggle while generalists thrive in fragmented boreal forests

inferredcites →https://doi.org/10.1111/1365-2745.12722openalex-snapshot

Measuring and predicting the influence of traits on the assembly processes of wood‐inhabiting fungi

inferredcites →https://doi.org/10.1111/1365-2745.12939openalex-snapshot

Independent effects of host and environment on the diversity of wood‐inhabiting fungi

inferredcites →https://doi.org/10.1111/1462-2920.15953openalex-snapshot

Stem traits, compartments and tree species affect fungal communities on decaying wood

inferredcites →https://doi.org/10.1111/acv.12075openalex-snapshot

Hollow beech trees identified as keystone structures for saproxylic beetles by analyses of functional and phylogenetic diversity

inferredcites →https://doi.org/10.1111/ecog.06807openalex-snapshot

Diversity and specialization responses to climate and land use differ between deadwood fungi and bacteria

inferredcites →https://doi.org/10.1111/ele.14271openalex-snapshot

Symbiotic status alters fungal eco‐evolutionary offspring trajectories

inferredcites →https://doi.org/10.1111/j.1095-8339.1981.tb00948.xopenalex-snapshot

Convergent evolution in discomycetes from bark and wood

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05723.xopenalex-snapshot

Patterns of fungal communities among and within decaying logs, revealed by 454 sequencing

inferredcites →https://doi.org/10.1111/j.1469-8137.2005.01436.xopenalex-snapshot

Anatomical and chemical defenses of conifer bark against bark beetles and other pests

inferredcites →https://doi.org/10.1111/j.1574-6941.2000.tb00683.xopenalex-snapshot

Interspecific combative interactions between wood-decaying basidiomycetes

inferredcites →https://doi.org/10.1111/j.1574-6941.2005.00010.xopenalex-snapshot

Wood-inhabiting fungal communities in woody debris of Norway spruce (Picea abies (L.) Karst.), as reflected by sporocarps, mycelial isolations and T-RFLP identification

inferredcites →https://doi.org/10.1111/jvs.13255openalex-snapshot

Occupancy model reveals limited detectability of lichens in a standardised large‐scale monitoring

inferredcites →https://doi.org/10.1111/mec.15237openalex-snapshot

Environmental filtering structures fungal endophyte communities in tree bark

inferredcites →https://doi.org/10.1111/nph.15301openalex-snapshot

Protax ‐fungi: a web‐based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences

inferredcites →https://doi.org/10.1111/nph.16032openalex-snapshot

Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae

inferredcites →https://doi.org/10.1111/oik.08388openalex-snapshot

Dead wood diversity promotes fungal diversity

inferredcites →https://doi.org/10.1111/rec.14056openalex-snapshot

Natural deadwood hosts more diverse pioneering wood‐inhabiting fungal communities than restored deadwood

inferredcites →https://doi.org/10.1128/aem.03017-09openalex-snapshot

Negative Effects of Sample Pooling on PCR-Based Estimates of Soil Microbial Richness and Community Structure

inferredcites →https://doi.org/10.1134/s1995425516010066openalex-snapshot

Dynamics of interaction between lichens and fallen deadwood in forest ecosystems of the eastern Baikal region

inferredcites →https://doi.org/10.1139/cjfr-2023-0061openalex-snapshot

Fungal community dynamics in coarse woody debris across decay stage, tree species, and stand development stage in northern boreal forests

inferredcites →https://doi.org/10.1139/x10-207openalex-snapshot

The effect of tree dimension on the diversity of bark microhabitat structures and bark use in Douglas-fir (Pseudotsuga menziesii var. menziesii)

inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot

Cutadapt removes adapter sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.18637/jss.v067.i01openalex-snapshot

Fitting Linear Mixed-Effects Models Using lme4

inferredcites →https://doi.org/10.2307/4109487openalex-snapshot

Botany. An Introduction to Plant Biology

inferredcites →https://doi.org/10.29203/ka.1995.309openalex-snapshot

Community structure and dynamics of wood-rotting Basidiomycetes on decomposing conifer trunks in northern Finland

inferredcites →https://doi.org/10.29203/ka.2022.516openalex-snapshot

Venturioscypha nigropila (Hyphodiscaceae, Helotiales) – a new genus and species from xeric Pinus bark

inferredcites →https://doi.org/10.3159/1095-5674(2005)132[375b:br]2.0.co;2openalex-snapshot

Biodiversity of Fungi: Inventory and Monitoring Methods

inferredcites →https://doi.org/10.3170/2008-8-18433openalex-snapshot

The influence of tree age and microhabitat quality on the occurrence of crustose lichens associated with old oaks

inferredcites →https://doi.org/10.3389/ffgc.2021.623758openalex-snapshot

Hypothesis and Theory: Fungal Spores in Stemflow and Potential Bark Sources

inferredcites →https://doi.org/10.3389/fmicb.2013.00291openalex-snapshot

FunGene: the functional gene pipeline and repository

inferredcites →https://doi.org/10.3389/fmicb.2023.1067906openalex-snapshot

Habitat and tree species identity shape aboveground and belowground fungal communities in central European forests

inferredcites →https://doi.org/10.3390/d14090766openalex-snapshot

Characterizing Crustose Lichen Communities—DNA Metabarcoding Reveals More than Meets the Eye

inferredcites →https://doi.org/10.3390/f12101386openalex-snapshot

Bark Thickness and Heights of the Bark Transition Area of Scots Pine

inferredcites →https://doi.org/10.3390/f12121781openalex-snapshot

Fungal Community Composition and Enzyme Activity in Different Type Bark of Pinus koraiensis

inferredcites →https://doi.org/10.3897/mycokeys.106.117540openalex-snapshot

Surveying lichen diversity in forests: A comparison of expert mapping and eDNA metabarcoding of bark surfaces

inferredcites →https://doi.org/10.5598/imafungus.2010.01.02.09openalex-snapshot

Cryptic species in lichen-forming fungi

inferredcites →https://doi.org/10.5943/ajom/3/1/18openalex-snapshot

The diversity of endolichenic fungi – A review

inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot

VSEARCH: a versatile open source tool for metagenomics

inferredcites →https://doi.org/10.7717/peerj.4925openalex-snapshot

Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/imafungus.17.190198zenodo-depositor-declared

Tree identity shapes composition, substrate shifts dominance in deadwood fungi of an old-growth lowland beech forest

inferred← citeshttps://doi.org/10.1016/j.biocon.2026.111897openalex-snapshot

To stand or not to stand - How tree death impacts fungal community development in spruce logs

inferred← citeshttps://doi.org/10.1111/1365-2664.70479openalex-snapshot

Regulating bark beetles with mechanical bark treatments: Trade‐offs among pest control, operational efficiency and biodiversity

inferred← citeshttps://doi.org/10.1111/1365-2745.70296openalex-snapshot

Distinct diversity trajectories of boreal wood‐inhabiting fungi following fire versus clear‐cutting

inferred← citeshttps://doi.org/10.1639/0007-2745-129.2.106openalex-snapshot

Student scientists, bulk sampling and DNA metabarcoding demonstrate improved species detectability in lichen diversity inventories

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