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Joint species distribution modelling with HMSC-R

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Habitat quality is more important than matrix quality for bird communities in protected areas

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Generalized joint attribute modeling for biodiversity analysis: median‐zero, multivariate, multifarious data

inferredcites →https://doi.org/10.1016/j.tree.2015.09.007openalex-snapshot

So Many Variables: Joint Modeling in Community Ecology

inferredcites →https://doi.org/10.1029/2008jd010201openalex-snapshot

A European daily high‐resolution gridded data set of surface temperature and precipitation for 1950–2006

inferredcites →https://doi.org/10.1098/rspb.2010.0244openalex-snapshot

Testing the heterospecific attraction hypothesis with time-series data on species co-occurrence

inferredcites →https://doi.org/10.1098/rspb.2017.0768openalex-snapshot

How are species interactions structured in species-rich communities? A new method for analysing time-series data

inferredcites →https://doi.org/10.1111/1365-2745.12722openalex-snapshot

Measuring and predicting the influence of traits on the assembly processes of wood‐inhabiting fungi

inferredcites →https://doi.org/10.1111/2041-210x.12501openalex-snapshot

Using latent variable models to identify large networks of species‐to‐species associations at different spatial scales

inferredcites →https://doi.org/10.1111/2041-210x.12502openalex-snapshot

Uncovering hidden spatial structure in species communities with spatially explicit joint species distribution models

inferredcites →https://doi.org/10.1111/2041-210x.12723openalex-snapshot

Using joint species distribution models for evaluating how species‐to‐species associations depend on the environmental context

inferredcites →https://doi.org/10.1111/brv.12222openalex-snapshot

Spatial predictions at the community level: from current approaches to future frameworks

inferredcites →https://doi.org/10.1111/ele.12757openalex-snapshot

How to make more out of community data? A conceptual framework and its implementation as models and software

inferredcites →https://doi.org/10.1111/geb.12102openalex-snapshot

Stacking species distribution models and adjusting bias by linking them to macroecological models

inferredcites →https://doi.org/10.1111/j.1365-2699.2011.02550.xopenalex-snapshot

SESAM - a new framework integrating macroecological and species distribution models for predicting spatio-temporal patterns of species assemblages

inferredcites →https://doi.org/10.1111/j.1461-0248.2004.00608.xopenalex-snapshot

The metacommunity concept: a framework for multi‐scale community ecology

inferredcites →https://doi.org/10.1111/j.1469-185x.2011.00187.xopenalex-snapshot

Ecological assembly rules in plant communities—approaches, patterns and prospects

inferredcites →https://doi.org/10.1515/9781400883790openalex-snapshot

The Theory of Ecological Communities (MPB-57)

inferredcites →https://doi.org/10.48550/arxiv.1703.03123openalex-snapshot

Scaling up Data Augmentation MCMC via Calibration

inferredcites →https://doi.org/10.5253/arde.v103i1.a1openalex-snapshot

Large-Scale Monitoring of Waders on Their Boreal and Arctic Breeding Grounds in Northern Europe

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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The Importance of Within‐Log Sampling Replication in Bark‐ and Wood‐Inhabiting Fungal Metabarcoding Studies

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Analyzing environmental‐trait interactions in ecological communities with fourth‐corner latent variable models

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Disappearance of an ecosystem engineer, the white-lipped peccary (Tayassu pecari), leads to density compensation and ecological release

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Species co-occurrence networks of ground beetles in managed grasslands

inferred← citeshttps://doi.org/10.1016/j.agee.2022.108250openalex-snapshot

Modelling potential natural pest control ecosystem services provided by arthropods in agricultural landscapes

inferred← citeshttps://doi.org/10.1016/j.funeco.2019.08.007openalex-snapshot

Morphological traits predict host-tree specialization in wood-inhabiting fungal communities

inferred← citeshttps://doi.org/10.1016/j.landurbplan.2021.104098openalex-snapshot

Citizen science data for urban planning: Comparing different sampling schemes for modelling urban bird distribution

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Fine-scale heterogeneity and local amplification of West Nile virus in urban environments in Berlin

inferred← citeshttps://doi.org/10.1093/ismeco/ycae142openalex-snapshot

Putative past, present, and future spatial distributions of deep-sea coral and sponge microbiomes revealed by predictive models

inferred← citeshttps://doi.org/10.1098/rsos.231589openalex-snapshot

A systematic review and guide for using multi-response statistical models in co-infection research

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Disentangling metacommunity processes using multiple metrics in space and time

inferred← citeshttps://doi.org/10.1111/1365-2664.70070openalex-snapshot

The value of conditional prediction: Can retained species help predict unknown discards in commercial fisheries?

inferred← citeshttps://doi.org/10.1111/1365-2745.13301openalex-snapshot

Using hierarchical joint models to study reproductive interactions in plant communities

inferred← citeshttps://doi.org/10.1111/2041-210x.13303openalex-snapshot

gllvm: Fast analysis of multivariate abundance data with generalized linear latent variable models in r

inferred← citeshttps://doi.org/10.1111/2041-210x.13471openalex-snapshot

phyr: An r package for phylogenetic species‐distribution modelling in ecological communities

inferred← citeshttps://doi.org/10.1111/acv.12998openalex-snapshot

Changes in waterbird occurrence and abundance at their northern range boundaries in response to climate warming: importance of site area and protection status

inferred← citeshttps://doi.org/10.1111/aje.70058openalex-snapshot

Trends in Richness and Occupancy of Ugandan Birds and Relation to Local Tree Cover

inferred← citeshttps://doi.org/10.1111/ddi.13026openalex-snapshot

Marine epibenthic functional diversity on Flemish Cap (north‐west Atlantic)—Identifying trait responses to the environment and mapping ecosystem functions

inferred← citeshttps://doi.org/10.1111/ddi.13169openalex-snapshot

Arthropod abundance modulates bird community responses to urbanization

inferred← citeshttps://doi.org/10.1139/cjfas-2023-0326openalex-snapshot

Hierarchical modelling of epibenthic communities on the Scotian Shelf and Gulf of Maine (Atlantic Canada) in support of conservation planning

inferred← citeshttps://doi.org/10.21203/rs.3.rs-1909233/v1openalex-snapshot

Tick microbial associations at the crossroad of horizontal and vertical transmission pathways

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