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ggClusterNet: An R package for microbiome network analysis and modularity‐based multiple network layouts

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/imt2.13openalex-snapshot
iNAP: An integrated network analysis pipeline for microbiome studies
inferredcites →https://doi.org/10.1002/imt2.32openalex-snapshot
ggClusterNet: An R package for microbiome network analysis and modularity‐based multiple network layouts
inferredcites →https://doi.org/10.1007/s13238-020-00724-8openalex-snapshot
A practical guide to amplicon and metagenomic analysis of microbiome data
inferredcites →https://doi.org/10.1016/j.jgg.2021.07.007openalex-snapshot
EVenn: Easy to create repeatable and editable Venn diagrams and Venn networks online
inferredcites →https://doi.org/10.1016/j.tree.2005.04.004openalex-snapshot
Network thinking in ecology and evolution
inferredcites →https://doi.org/10.1038/nature02115openalex-snapshot
Compartments revealed in food-web structure
inferredcites →https://doi.org/10.1038/nature03288openalex-snapshot
Functional cartography of complex metabolic networks
inferredcites →https://doi.org/10.1038/nature08058openalex-snapshot
Microbial community structure and its functional implications
inferredcites →https://doi.org/10.1038/s41558-021-00989-9openalex-snapshot
Climate warming enhances microbial network complexity and stability
inferredcites →https://doi.org/10.1080/10618600.1996.10474713openalex-snapshot
R: A Language for Data Analysis and Graphics
inferredcites →https://doi.org/10.1086/338954openalex-snapshot
Race, School Integration, and Friendship Segregation in America
inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1103/physrevlett.86.3200openalex-snapshot
Epidemic Spreading in Scale-Free Networks
inferredcites →https://doi.org/10.1109/tbdata.2020.3019641openalex-snapshot
GGraph: An Efficient Structure-Aware Approach for Iterative Graph Processing
inferredcites →https://doi.org/10.1136/ard.2007.084244openalex-snapshot
Development and validation of the Spondyloarthritis Research Consortium of Canada (SPARCC) Enthesitis Index
inferredcites →https://doi.org/10.1137/s003614450342480openalex-snapshot
The Structure and Function of Complex Networks
inferredcites →https://doi.org/10.1145/1124772.1124851openalex-snapshot
Visualization of large hierarchical data by circle packing
inferredcites →https://doi.org/10.1186/1471-2105-13-113openalex-snapshot
Molecular ecological network analyses
inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot
WGCNA: an R package for weighted correlation network analysis
inferredcites →https://doi.org/10.1186/s40168-020-00857-2openalex-snapshot
Earth microbial co-occurrence network reveals interconnection pattern across microbiomes
inferredcites →https://doi.org/10.1371/journal.pcbi.1004226openalex-snapshot
Sparse and Compositionally Robust Inference of Microbial Ecological Networks
inferredcites →https://doi.org/10.1609/icwsm.v3i1.13937openalex-snapshot
Gephi: An Open Source Software for Exploring and Manipulating Networks
inferredcites →https://doi.org/10.18637/jss.v024.i01openalex-snapshot
statnet : Software Tools for the Representation, Visualization, Analysis and Simulation of Network Data
inferredcites →https://doi.org/10.18637/jss.v024.i06openalex-snapshot
Social Network Analysis withsna
inferredcites →https://doi.org/10.25080/tcwv9851openalex-snapshot
Exploring Network Structure, Dynamics, and Function using NetworkX

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Water-Nitrogen Coupling Effects on Potato Water-Nitrogen Use Efficiency and Soil Microbial Properties in North China
inferred← citeshttps://doi.org/10.2139/ssrn.4884355openalex-extracted
Seasonal Variations in Soil Bacterial Communities and Co-Occurrence Networks of Albizia Odoratissima in the Dry-Hot Valley of Northwestern Guangxi, China
inferred← citeshttps://doi.org/10.1002/advs.202512447openalex-snapshot
EasyAmplicon 2: Expanding PacBio and Nanopore Long Amplicon Sequencing Analysis Pipeline for Microbiome
inferred← citeshttps://doi.org/10.1002/ctm2.1331openalex-snapshot
Intratumoural microbiome can predict the prognosis of hepatocellular carcinoma after surgery
inferred← citeshttps://doi.org/10.1002/ece3.11189openalex-snapshot
Natural mating ability is associated with gut microbiota composition and function in captive male giant pandas
inferred← citeshttps://doi.org/10.1002/ecm.70039openalex-snapshot
Root‐mycorrhizal foraging strategies shift with forest age more than with nitrogen manipulation
inferred← citeshttps://doi.org/10.1002/fes3.70034openalex-snapshot
Enhancing Switchgrass Growth With Biochar Derived From Mushroom Residue: A Study on Regulating Physicochemical Properties of Acidic Phosphogypsum
inferred← citeshttps://doi.org/10.1002/fes3.70314openalex-snapshot
Responses of Soil Properties and Microbial Communities to Long‐Term Winter Land‐Use Systems in the Erhai Lake Basin
inferred← citeshttps://doi.org/10.1002/imt2.134openalex-snapshot
Wheat straw hydrochar induced negative priming effect on carbon decomposition in a coastal soil
inferred← citeshttps://doi.org/10.1002/imt2.175openalex-snapshot
Wekemo Bioincloud: A user‐friendly platform for meta‐omics data analyses
inferred← citeshttps://doi.org/10.1002/imt2.185openalex-snapshot
Vaginal microbiota are associated with in vitro fertilization during female infertility
inferred← citeshttps://doi.org/10.1002/imt2.70001openalex-snapshot
EasyMetagenome: A user‐friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research
inferred← citeshttps://doi.org/10.1002/imt2.70002openalex-snapshot
MicrobiomeStatPlots: Microbiome statistics plotting gallery for meta‐omics and bioinformatics
inferred← citeshttps://doi.org/10.1002/imt2.70041openalex-snapshot
ggClusterNet 2: An R package for microbial co‐occurrence networks and associated indicator correlation patterns
inferred← citeshttps://doi.org/10.1002/imt2.70065openalex-snapshot
Gut microbial‐derived 3,4‐dihydroxyphenylacetic acid ameliorates reproductive phenotype of polycystic ovary syndrome
inferred← citeshttps://doi.org/10.1002/imt2.70118openalex-snapshot
Chondroitin sulfate restores muscle mass via gut–muscle axis remodeling through sugar–bile acid metabolism reprogramming
inferred← citeshttps://doi.org/10.1002/imt2.71openalex-snapshot
A guide for comparing microbial co‐occurrence networks
inferred← citeshttps://doi.org/10.1002/imt2.83openalex-snapshot
EasyAmplicon: An easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research
inferred← citeshttps://doi.org/10.1002/imt2.90openalex-snapshot
Microbial network signatures of early colonizers in infants with eczema
inferred← citeshttps://doi.org/10.1002/imt2.92openalex-snapshot
QCMI: A method for quantifying putative biotic associations of microbes at the community level
inferred← citeshttps://doi.org/10.1002/ldr.5106openalex-snapshot
Afforestation alters soil microbial community composition and reduces microbial network complexity in a karst region of Southwest China
inferred← citeshttps://doi.org/10.1002/ldr.70391openalex-snapshot
Continuous Cropping Reshapes the Rhizosphere Microbiome and Soil Properties in Tobacco Production Systems
inferred← citeshttps://doi.org/10.1002/ldr.70454openalex-snapshot
Understanding Long‐Term Influence of Agroforestry Systems on Soil Microbiome Dynamics and Their Ecological Importance in Restored Sodic Soils of Indo‐Gangetic Plains
inferred← citeshttps://doi.org/10.1002/ldr.70546openalex-snapshot
Multitrophic Network Complexity of Above–Belowground Communities Governs Karst Forest Ecosystem Multifunctionality
inferred← citeshttps://doi.org/10.1002/ldr.70692openalex-snapshot
Forest Type Impacts Productivity in Karst Forests More Than Soil Nutrient Stocks and Multi‐Trophic Biodiversity
inferred← citeshttps://doi.org/10.1002/ldr.70884openalex-snapshot
Seasonal Dynamics of Soil Multitrophic Biodiversity, Co‐Occurrence Network and Assembly Mechanisms Under Typical Vegetation Restoration Patterns in Karst Region
inferred← citeshttps://doi.org/10.1002/lno.70015openalex-snapshot
Molecular activity mediates the composition and assembly of dissolved organic matter in lake sediments
inferred← citeshttps://doi.org/10.1002/ps.70209openalex-snapshot
Identification of a Pseudomonas brassicacearum strain as a potential biocontrol agent against clubroot in cruciferous plants through endophytic bacterial community analysis and culture‐dependent isolation
inferred← citeshttps://doi.org/10.1002/sae2.70137openalex-snapshot
Exploring Regional Biogeography of Abundant and Rare Bacteria in Soils With Long‐Read CycloneSEQ
inferred← citeshttps://doi.org/10.1007/s00248-024-02390-3openalex-snapshot
Deciphering Microbial Adaptation in the Rhizosphere: Insights into Niche Preference, Functional Profiles, and Cross-Kingdom Co-occurrences
inferred← citeshttps://doi.org/10.1007/s00248-024-02453-5openalex-snapshot
Biocrusts Mediate the Niche Distribution and Diversity of Ammonia-Oxidizing Microorganisms in the Gurbantunggut Desert, Northwestern China
inferred← citeshttps://doi.org/10.1007/s00248-025-02499-zopenalex-snapshot
Deciphering the Distinct Associations of Rhizospheric and Endospheric Microbiomes with Capsicum Plant Pathological Status
inferred← citeshttps://doi.org/10.1007/s00253-023-12519-yopenalex-snapshot
Effects of biochar addition on aeolian soil microbial community assembly and structure
inferred← citeshttps://doi.org/10.1007/s00253-024-13184-5openalex-snapshot
Dissecting the role of soybean rhizosphere-enriched bacterial taxa in modulating nitrogen-cycling functions
inferred← citeshttps://doi.org/10.1007/s00253-026-13742-zopenalex-snapshot
Fusarium enrichment alters the soil microbial community and network structure of Brassica crops
inferred← citeshttps://doi.org/10.1007/s00284-025-04135-yopenalex-snapshot
Spatial and Temporal Characteristics of Riverine Fungal Communities and Their Responses to Environmental Factors in China's Largest Jiang-Flavor Baijiu-Producing Region
inferred← citeshttps://doi.org/10.1007/s00300-026-03517-7openalex-snapshot
Water-mass structuring of metazoan communities inferred from environmental DNA in the Chukchi Borderland during the summer sea-ice retreat period
inferred← citeshttps://doi.org/10.1007/s00343-024-4028-6openalex-snapshot
Heavy metal stress strengthens the stability and complexity of microbial molecular ecological networks in Sanyang wetland sediments
inferred← citeshttps://doi.org/10.1007/s00374-026-02038-zopenalex-snapshot
Novel-processed organic fertilizers improve rice yield, soil fertility, and increase microbial community diversity in double-cropping paddy fields
inferred← citeshttps://doi.org/10.1007/s10495-025-02188-9openalex-snapshot
Multi-omics analysis revealed heterogeneity of AARS1 and AARS2 in pan-cancer and identified AARS1 as a potential prognostic biomarker for urologic neoplasms
inferred← citeshttps://doi.org/10.1007/s10661-023-11593-zopenalex-snapshot
Untangling microbiota diversity and assembly patterns in the world’s longest underground culvert water diversion canal
inferred← citeshttps://doi.org/10.1007/s11104-023-06347-2openalex-snapshot
A sexual role in regulation of the assembly of bacterial and arbuscular mycorrhizal fungal communities
inferred← citeshttps://doi.org/10.1007/s11104-023-06405-9openalex-snapshot
Soil bacteria mediate organic carbon stability during alpine wetland biogeomorphic succession in the arid region of Central Asia
inferred← citeshttps://doi.org/10.1007/s11104-024-06862-wopenalex-snapshot
Biodiversity and network complexity of rhizosphere soil microbiomes regulate the differentiation of Capsicum growth strategies
inferred← citeshttps://doi.org/10.1007/s11104-024-06917-yopenalex-snapshot
Impact of fallen wood on soil protists in the subtropics
inferred← citeshttps://doi.org/10.1007/s11104-025-07265-1openalex-snapshot
Hotspots of enzyme activities reflect micro-scale heterogeneity in nutrient mobilization in paddy soils
inferred← citeshttps://doi.org/10.1007/s11104-025-07280-2openalex-snapshot
Improvement in soil organic carbon turnover and microbial community niche differentiation with the addition of commercial organic fertilizers in wheat–green manure systems
inferred← citeshttps://doi.org/10.1007/s11104-025-07335-4openalex-snapshot
Oilseed rape (Brassica napus L.) responses to potassium deficiency stress: accelerated differentiation of microbial communities within specific compartment niches
inferred← citeshttps://doi.org/10.1007/s11104-025-07777-wopenalex-snapshot
Different salt stress types regulated rhizosphere rare bacterial communities through root exudates and soil physicochemical properties
inferred← citeshttps://doi.org/10.1007/s11104-025-07986-3openalex-snapshot
Arbuscular mycorrhizal fungi inoculation enhances 15N uptake by rice via modifying rhizosphere and hyphosphere soil bacterial and fungal community and soil enzyme activity
inferred← citeshttps://doi.org/10.1007/s11104-025-08027-9openalex-snapshot
Reshaping the root-associated bacterial community for enhanced phosphorus deficiency tolerance in foxtail millet
inferred← citeshttps://doi.org/10.1007/s11104-026-08795-yopenalex-snapshot
Diverse plants recruit functional microbes as engines to drive ecosystem multifunctionality in post-fire forests
inferred← citeshttps://doi.org/10.1007/s11356-023-29744-7openalex-snapshot
Different bacterial and fungal community patterns in restored habitats in coal-mining subsidence areas
inferred← citeshttps://doi.org/10.1007/s11368-025-04040-8openalex-snapshot
Co-application of nitrification inhibitors with straw or biochar yielded varying effects on soil nitrification rate, N2O emissions, and ammonia oxidizers
inferred← citeshttps://doi.org/10.1007/s11427-022-2279-5openalex-snapshot
Growth substrates alter aboveground plant microbial and metabolic properties thereby influencing insect herbivore performance
inferred← citeshttps://doi.org/10.1007/s11427-024-2692-5openalex-snapshot
Decoupled responses of soil microbial diversity and ecosystem functions to successive degeneration processes in alpine pioneer community
inferred← citeshttps://doi.org/10.1007/s11427-025-3047-5openalex-snapshot
Uncovering the gut microbiome and antibiotic resistome of mammals on the Tibetan Plateau
inferred← citeshttps://doi.org/10.1007/s11802-025-5888-xopenalex-snapshot
Intestinal Flatulence in Pampus argenteus: Changes in Gut Microbiota
inferred← citeshttps://doi.org/10.1007/s12571-024-01499-0openalex-snapshot
Assessment of wheat grain quality in China during harvest and storage using a mycobiome approach
inferred← citeshttps://doi.org/10.1007/s12672-025-01994-6openalex-snapshot
Disulfidptosis, a novel regulated cell death to predict survival and therapeutic response in kidney renal clear cell carcinoma
inferred← citeshttps://doi.org/10.1007/s13592-026-01282-4openalex-snapshot
Evaluating gut microbial community dynamics in Bombus terrestris queens during diapause: a comparison of relative and absolute quantification methods
inferred← citeshttps://doi.org/10.1007/s40333-024-0031-1openalex-snapshot
Effects of water tables and nitrogen application on soil bacterial community diversity, network structure, and function in an alpine wetland, China
inferred← citeshttps://doi.org/10.1007/s40333-025-0088-5openalex-snapshot
Impacts of continuous melon cropping on soil properties and microbial network restructuring
inferred← citeshttps://doi.org/10.1007/s42773-026-00598-9openalex-snapshot
Biochar orchestrates coordinated soil-microbe-metabolite responses in acidifying paddy soils: evidence from a 5-year field study
inferred← citeshttps://doi.org/10.1007/s42832-025-0330-2openalex-snapshot
Host genotype-driven assembly of bacterial communities in the rice root microdomains
inferred← citeshttps://doi.org/10.1007/s42832-025-0347-6openalex-snapshot
Long-term tea cultivation degrades soil health: Insights from microbial structure and function in tea gardens
inferred← citeshttps://doi.org/10.1007/s42832-026-0377-8openalex-snapshot
Elevated plant nitrogen suppresses post-senescence decomposition: A novel mechanism in nitrogen-enriched ecosystems
inferred← citeshttps://doi.org/10.1007/s42832-026-0392-9openalex-snapshot
Metagenomic evidence for adaptive P-acquisition strategies to sustain elevated soil microbial biomass P under swine manure fertilization
inferred← citeshttps://doi.org/10.1007/s42832-026-0455-yopenalex-snapshot
Salinity drives the divergence of nitrogen-cycling microbial communities across land-use types in the Qaidam Basin
inferred← citeshttps://doi.org/10.1007/s42832-026-0458-8openalex-snapshot
Soil arthropod communities are better predictors of soil quality than nematodes in agricultural soils
inferred← citeshttps://doi.org/10.1007/s44246-023-00060-6openalex-snapshot
Changes in abundant and rare microbial taxa that dominated the formation of soil carbon pool during short-term dryland-to-paddy conversion
inferred← citeshttps://doi.org/10.1007/s44246-024-00163-8openalex-snapshot
Regulatory mechanism of bamboo biochar dosage on cadmium accumulation in Salix psammophila: insights from rhizosphere microbial communities, assembly processes, and interactions
inferred← citeshttps://doi.org/10.1016/b978-0-443-14170-6.00020-2openalex-snapshot
Statistical analyses and visualization of biological sequencing big data
inferred← citeshttps://doi.org/10.1016/j.agee.2024.109177openalex-snapshot
Nitrogen fertilization increases the niche breadth of soil nitrogen-cycling microbes and stabilizes their co-occurrence network in a karst agroecosystem
inferred← citeshttps://doi.org/10.1016/j.agee.2024.109186openalex-snapshot
Deciphering microbial drivers of soil organic matter mineralization in surface and subsurface soil during long-term vegetation succession
inferred← citeshttps://doi.org/10.1016/j.agee.2025.109812openalex-snapshot
Enhanced multifunctionality of sandy loam soil with co-application of biochar and organic manure is driven by microbial network complexity rather than community diversity
inferred← citeshttps://doi.org/10.1016/j.agee.2026.110443openalex-snapshot
Intercropping enhances soil aggregate stability and associated organic carbon via divergent microbial assembly and co-occurrence networks
inferred← citeshttps://doi.org/10.1016/j.aninu.2025.10.015openalex-snapshot
Iron nutrition and host microbiota regulation in turbot (Scophthalmus maximus L.): The health risk of excess surpasses that of deficiency
inferred← citeshttps://doi.org/10.1016/j.apsoil.2023.105103openalex-snapshot
Identification of antibiotic resistant bacteria communities and a GeoChip based study of resistome in Fusarium wilt diseased and healthy soil
inferred← citeshttps://doi.org/10.1016/j.apsoil.2024.105521openalex-snapshot
Biochar amendment shifts bacterial keystone taxa regulating soil phosphorus dynamics
inferred← citeshttps://doi.org/10.1016/j.apsoil.2024.105664openalex-snapshot
Environmental filtration and host selection effect influence bacterial community assembly in broad-leaved Korean pine forests: A regional scale study
inferred← citeshttps://doi.org/10.1016/j.apsoil.2024.105678openalex-snapshot
Successive monoculture of Eucalyptus spp. alters the structure and network connectivity, rather than the assembly pattern of rhizosphere and bulk soil bacteria
inferred← citeshttps://doi.org/10.1016/j.apsoil.2024.105783openalex-snapshot
Natural succession and artificial management have different effects on soil microbial ecological patterns in wetland resulting from land-use change
inferred← citeshttps://doi.org/10.1016/j.apsoil.2024.105805openalex-snapshot
Impacts of continuous potato cropping on soil microbial assembly processes and spread of potato common scab
inferred← citeshttps://doi.org/10.1016/j.apsoil.2025.106156openalex-snapshot
Light intensity surpasses soil factors in shaping dynamics and functions of Sophora davidii-associated bacterial communities during forest succession
inferred← citeshttps://doi.org/10.1016/j.apsoil.2025.106167openalex-snapshot
Bacterial–fungal interkingdom interactions mediate effects of biodiversity on soil carbon dynamics in wheat fields under long-term fertilization
inferred← citeshttps://doi.org/10.1016/j.apsoil.2025.106579openalex-snapshot
Biodegradable mulch films drive microbial divergence and heighten environmental risks
inferred← citeshttps://doi.org/10.1016/j.apsoil.2025.106642openalex-snapshot
Linkages between enhanced soil cellobiohydrolase activity and nutrient status-driven shifts in cbhI-harboring fungal community under long-term swine manure fertilization
inferred← citeshttps://doi.org/10.1016/j.apsoil.2025.106767openalex-snapshot
Endophyte-derived synthetic microbial communities for sustainable agricultural practices: Enhancing crop productivity and disease suppression in pepper
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.106998openalex-snapshot
Soil management legacy drives the short-term response of the soil microbiome to compost application
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.107214openalex-snapshot
Long-term co-contamination with arsenic and PAHs reshapes soil microbial interactions and functional allocation
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.107233openalex-snapshot
Aridity shapes soil bacterial and fungal β-diversity in Inner Mongolia grasslands: the role of stochasticity and network complexity
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.107247openalex-snapshot
Arbuscular mycorrhizal fungi recruit siderophore-producing phosphate solubilizing bacteria to mobilize sparingly soluble inorganic phosphate in subtropical orchard soils
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.107379openalex-snapshot
Intensifying aridity shapes network patterns of soil bacterial communities and geographical distribution of sensitive functional groups in grasslands and farmlands on the Loess Plateau
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.107462openalex-snapshot
Carbon‑nitrogen stoichiometric imbalance following shrub encroachment increases bacterial but not fungal network stability in a semi-arid grassland
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.107500openalex-snapshot
Invasive plant soil conditioning reshapes microbial function and community organization in response to short-term carbon and nitrogen inputs
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2023.740401openalex-snapshot
Response of growth performance, antioxidant capacity, and gut microbiota to dietary cholesterol and lecithin in the juvenile Redclaw crayfish, Cherax quadricarinatus
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.740810openalex-snapshot
Sarafloxacin hydrochloride exposure disrupts gut microbiota and increases shrimp susceptibility to Vibrio anguillarum infection
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741330openalex-snapshot
Respiration rate and intestinal microbiota as promising indicators for assessing starvation intensity and health status in Pacific oyster (Crassostrea gigas)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741822openalex-snapshot
Unraveling the causation of flatulence on silver pomfret after starvation aquaculture involved in intestinal microbiota structure, enzyme, and histology
inferred← citeshttps://doi.org/10.1016/j.avrs.2026.100400openalex-snapshot
Constructing healthy nests: Host behavior shapes nest microbiota and affects reproductive performance in birds
inferred← citeshttps://doi.org/10.1016/j.bbi.2025.05.030openalex-snapshot
Nod2 deficiency exacerbates schizophrenia-related alterations in offspring of maternal immune activation in a sex-dependent manner
inferred← citeshttps://doi.org/10.1016/j.biortech.2023.129468openalex-snapshot
Improved simultaneous nitrification–denitrification in fixed-bed baffled bioreactors treating mariculture wastewater: Performance and microbial community behaviors
inferred← citeshttps://doi.org/10.1016/j.biortech.2026.134358openalex-snapshot
Unraveling the redox-driven mechanisms of viral-bacterial interactions in modulating the fate of antibiotic resistance genes
inferred← citeshttps://doi.org/10.1016/j.catena.2023.107306openalex-snapshot
Grazing and reclamation-induced microbiome alterations drive organic carbon stability within soil aggregates in alpine steppes
inferred← citeshttps://doi.org/10.1016/j.catena.2025.108714openalex-snapshot
Effect of soil microbial community on ecosystem multifunctionality in an alpine grassland
inferred← citeshttps://doi.org/10.1016/j.catena.2025.108732openalex-snapshot
The life strategy and community complexity of arbuscular mycorrhizal fungi are intricately associated with erosion-induced phosphorus loss risk in a phosphorus-rich mountain
inferred← citeshttps://doi.org/10.1016/j.catena.2025.109652openalex-snapshot
Wildfire reshapes the composition and symbiotic networks of soil microbial communities in alpine marshy meadows
inferred← citeshttps://doi.org/10.1016/j.catena.2026.109798openalex-snapshot
Shrub encroachment enhances soil multifunctionality by promoting interdomain interactions and reducing bacterial network complexity and competition
inferred← citeshttps://doi.org/10.1016/j.catena.2026.110293openalex-snapshot
Fire severity alters soil microbial diversity and community stability in a subtropical forest ecosystem
inferred← citeshttps://doi.org/10.1016/j.catena.2026.110327openalex-snapshot
Duration-dependent legacy of repeated winter warming progressively degrades growing-season soil structure, resources, and microbial functioning in freeze–thaw farmlands
inferred← citeshttps://doi.org/10.1016/j.cbd.2025.101598openalex-snapshot
Effects of low temperature on intestinal microbiota composition of silver pomfret (Pampus argenteus)
inferred← citeshttps://doi.org/10.1016/j.cej.2024.158273openalex-snapshot
Timing of magnetite introduction drives distinct community succession in bioelectrochemical systems: From colonization to acclimation
inferred← citeshttps://doi.org/10.1016/j.cej.2025.167495openalex-snapshot
Humic acid alters the surrounding-magnetite microecological environment for denitrifying communities under organic carbon limitation: From ecological to molecular scales
inferred← citeshttps://doi.org/10.1016/j.chom.2024.06.005openalex-snapshot
Maternal gestational diabetes mellitus associates with altered gut microbiome composition and head circumference abnormalities in male offspring
inferred← citeshttps://doi.org/10.1016/j.chom.2024.10.017openalex-snapshot
A metagenome-assembled genome inventory for children reveals early-life gut bacteriome and virome dynamics
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2025.110157openalex-snapshot
Methodology for microbiome data analysis: An overview
inferred← citeshttps://doi.org/10.1016/j.crmicr.2026.100666openalex-snapshot
Biases in high throughput sequencing methods affect microbial molecular ecology networks and keystone taxa identification in the Cinnamomum migao rhizosphere and phyllosphere
inferred← citeshttps://doi.org/10.1016/j.csbj.2023.10.043openalex-snapshot
Application of coronarin enhances maize drought tolerance by affecting interactions between rhizosphere fungal community and metabolites
inferred← citeshttps://doi.org/10.1016/j.csbj.2024.05.047openalex-snapshot
Biotic interactions and environmental modifications determine symbiotic microbial diversity and stability
inferred← citeshttps://doi.org/10.1016/j.ecoenv.2025.118104openalex-snapshot
Resource utilization of decarbonized coal gasification slag in soil quality improvement: New insights into microbial community composition and environmental risk assessment
inferred← citeshttps://doi.org/10.1016/j.ecoenv.2025.119048openalex-snapshot
Metagenomic insights into the ecological risks of multiple heavy metals on soil bacterial communities and resistance-related genes
inferred← citeshttps://doi.org/10.1016/j.ecofro.2026.07.009openalex-snapshot
Desertification and restoration reshape soil microbial interaction networks in Brazilian drylands
inferred← citeshttps://doi.org/10.1016/j.ecoinf.2025.103017openalex-snapshot
Key traits in functional trait networks can identify the temporal structure of fish communities in coastal waters
inferred← citeshttps://doi.org/10.1016/j.ecoleng.2025.107743openalex-snapshot
Artificial vegetation restoration patterns regulated soil multifunctionality via co-occurrence network complexity of multitrophic organism in degraded karst region
inferred← citeshttps://doi.org/10.1016/j.ecoleng.2025.107845openalex-snapshot
Hydrological restoration reshapes nitrogen cycling in alpine wetlands: Contrasting denitrification and anammox responses to rewetting
inferred← citeshttps://doi.org/10.1016/j.ecolind.2023.111164openalex-snapshot
Soil bacterial communities in alpine wetlands in arid Central Asia remain stable during the seasonal freeze–thaw period
inferred← citeshttps://doi.org/10.1016/j.ecolind.2024.113034openalex-snapshot
Mature Tiankengs are biodiversity hotspots of soil microorganisms in the karst region
inferred← citeshttps://doi.org/10.1016/j.ecolind.2025.114232openalex-snapshot
Revegetation of desert steppe soil enhances soil quality while decreasing microbial interdomain network stability
inferred← citeshttps://doi.org/10.1016/j.ecolind.2026.114834openalex-snapshot
The median survival time of motifs: A novel motif-based indicator reveals the impact of algal blooms on bacterial network interaction stability
inferred← citeshttps://doi.org/10.1016/j.ecolind.2026.115299openalex-snapshot
Crucial role of conditionally rare taxa in preserving bacterioplankton community stability in a large reservoir during seasonal water level fluctuations
inferred← citeshttps://doi.org/10.1016/j.ejsobi.2025.103785openalex-snapshot
Soil pH and organic phosphorus co-shape the diversity and assembly processes of arbuscular mycorrhizal fungal community in subtropical broadleaved forests
inferred← citeshttps://doi.org/10.1016/j.ejsobi.2025.103798openalex-snapshot
Effects of forest management intensity on soil microbial diversity and community assembly in Carya cathayensis plantations
inferred← citeshttps://doi.org/10.1016/j.ejsobi.2026.103856openalex-snapshot
Strip tillage with full straw mulching reshapes microbial succession process: Decoding time-dependent community assembly and metabolic function
inferred← citeshttps://doi.org/10.1016/j.enceco.2025.09.017openalex-snapshot
Microbial networks drive the fate of aging microplastics in constructed wetlands: Interception efficiency versus N₂O rises
inferred← citeshttps://doi.org/10.1016/j.envint.2024.108916openalex-snapshot
Combined toxicity of Cd and aniline to soil bacteria varying with exposure sequence
inferred← citeshttps://doi.org/10.1016/j.envpol.2025.126028openalex-snapshot
Community structure and metabolic potentials of keystone taxa and their associated bacteriophages within rice root endophytic microbiome in response to metal(loid)s contamination
inferred← citeshttps://doi.org/10.1016/j.envpol.2026.129325openalex-snapshot
Environmental radionuclide contamination is associated with the diet and gut microbiota of wild passerines Parus major and Ficedula hypoleuca
inferred← citeshttps://doi.org/10.1016/j.envres.2022.114142openalex-snapshot
Changes in microbial community composition drive the response of ecosystem multifunctionality to elevated ozone
inferred← citeshttps://doi.org/10.1016/j.envres.2023.116195openalex-snapshot
Significant roles of core prokaryotic microbiota across soil profiles in an organic contaminated site: Insight into microbial assemblage, co-occurrence patterns, and potentially key ecological functions
inferred← citeshttps://doi.org/10.1016/j.envres.2023.116827openalex-snapshot
Selenium-induced rhizosphere microorganisms endow salt-sensitive soybeans with salt tolerance
inferred← citeshttps://doi.org/10.1016/j.envres.2023.117153openalex-snapshot
Microbial community structure and its driving mechanisms in the Hangbu estuary of Chaohu Lake under different sedimentary areas
inferred← citeshttps://doi.org/10.1016/j.envres.2024.118517openalex-snapshot
Biotic and abiotic factors interplay in structuring the dynamics of microbial co-occurrence patterns in tropical mountainsides
inferred← citeshttps://doi.org/10.1016/j.envres.2024.119206openalex-snapshot
Warming-induced shifts in alpine soil microbiome: An ecosystem-scale study with environmental context-dependent insights
inferred← citeshttps://doi.org/10.1016/j.envres.2024.120369openalex-snapshot
Variation in microbial communities and network ecological clusters driven by soil organic carbon in an inshore saline soil amended with hydrochar in Yellow River Delta, China
inferred← citeshttps://doi.org/10.1016/j.envres.2024.120373openalex-snapshot
Functional redundancy enables a simplified consortium to match the lignocellulose degradation capacity of the original consortium
inferred← citeshttps://doi.org/10.1016/j.envres.2026.123786openalex-snapshot
Implications of functional zoning on river sediment bacteria in a transitional medium-sized city: Insights from environmental drivers, assembly processes, and keystone species
inferred← citeshttps://doi.org/10.1016/j.envres.2026.125255openalex-snapshot
Soil-specific resilience of comammox and canonical ammonia oxidizers shapes drought-heat legacy effects on N2O emissions
inferred← citeshttps://doi.org/10.1016/j.envres.2026.125784openalex-snapshot
Nitrogen addition regulates post-drought N2O emissions by reshaping the resilience of canonical and complete ammonia oxidizers in subtropical red soil
inferred← citeshttps://doi.org/10.1016/j.ese.2023.100334openalex-snapshot
Salinity causes differences in stratigraphic methane sources and sinks
inferred← citeshttps://doi.org/10.1016/j.eti.2024.103911openalex-snapshot
Positive effects of nitrogen fertilization on the flavor ingredients of tea (Wuniuzao), soil physicochemical properties, and microbial communities
inferred← citeshttps://doi.org/10.1016/j.eti.2026.104786openalex-snapshot
Contrasting latitudinal patterns of reservoir methane-cycling microbial communities in water and sediment
inferred← citeshttps://doi.org/10.1016/j.eti.2026.104945openalex-snapshot
Long-term manure substitution promotes soil organic carbon stability by enriching key functional genes in coal mine reclamation agroecosystems
inferred← citeshttps://doi.org/10.1016/j.eti.2026.105006openalex-snapshot
Wood vinegar-modified biochar improves soybean growth in saline soils by enhancing soil phosphorus availability and microbial network stability
inferred← citeshttps://doi.org/10.1016/j.eti.2026.105143openalex-snapshot
Protein structural omics insights into microbial communities succession and alkaline adaptation during aerobic fermentation of thiourea residue
inferred← citeshttps://doi.org/10.1016/j.fbio.2026.108894openalex-snapshot
Lactiplantibacillus plantarum CN2018 targets gut microbiota and hepatic lipogenesis to counteract diet-induced obesity
inferred← citeshttps://doi.org/10.1016/j.fcr.2024.109512openalex-snapshot
Organic substitution regime with optimized irrigation improves potato water and nitrogen use efficiency by regulating soil chemical properties rather than microflora structure
inferred← citeshttps://doi.org/10.1016/j.fmre.2025.02.008openalex-snapshot
Stimulating the non-ARG harbored microbes with a specific carbon source can suppress the rebound of soil ARB after calcium peroxide application
inferred← citeshttps://doi.org/10.1016/j.fmre.2026.04.014openalex-snapshot
Enhanced soil health and greenhouse gas mitigation potential are linked to microbial network restructuring under long-term organic farming
inferred← citeshttps://doi.org/10.1016/j.foreco.2026.123559openalex-snapshot
Slope aspect alleviates the response of soil protistan functional structure to the conversion of natural forests to chestnut plantations in subtropical forests
inferred← citeshttps://doi.org/10.1016/j.foreco.2026.123997openalex-snapshot
Forestation alleviates the negative effect of temperature on carbon fluxes across soil nematode food webs in southwest China
inferred← citeshttps://doi.org/10.1016/j.gca.2025.06.008openalex-snapshot
Does greater molecular diversity in soil organic matter imply greater persistence: Insights from molecular and multi-property analyses in Western China
inferred← citeshttps://doi.org/10.1016/j.gecco.2025.e03458openalex-snapshot
Flexible host–microbe interaction aid adaptation of black-necked crane to seasonal shifts
inferred← citeshttps://doi.org/10.1016/j.gecco.2025.e03956openalex-snapshot
Moderate grazing drives contrasting microbial network reorganization and functional shifts in desert and meadow steppes of Inner Mongolia
inferred← citeshttps://doi.org/10.1016/j.geoderma.2024.116786openalex-snapshot
Enhanced productivity of maize through intercropping is associated with community composition, core species, and network complexity of abundant microbiota in rhizosphere soil
inferred← citeshttps://doi.org/10.1016/j.geoderma.2025.117295openalex-snapshot
Tide-driven biogeochemical gradient shapes the vertical profile of dark carbon fixation in intertidal wetlands
inferred← citeshttps://doi.org/10.1016/j.geoderma.2026.117780openalex-snapshot
Biogenic carbon input from Spartina alterniflora eradication governs nitrate removal pathways and N2O emission in estuarine mangrove wetlands
inferred← citeshttps://doi.org/10.1016/j.geoderma.2026.117879openalex-snapshot
Mycorrhizal type mediates coupled plant-soil and plant-phyllosphere feedbacks: divergent mechanisms driving subtropical tree growth
inferred← citeshttps://doi.org/10.1016/j.geoderma.2026.117992openalex-snapshot
Integration of intercropping with reduced N fertilization enhances soil micro-food web complexity and stability: Insights from soil biodiversity and multitrophic associations
inferred← citeshttps://doi.org/10.1016/j.hal.2026.103179openalex-snapshot
Contrasting growth phase-dependent microbiota dynamics between dinoflagellates and diatoms
inferred← citeshttps://doi.org/10.1016/j.ibiod.2025.106105openalex-snapshot
Vertical distribution and environmental controls of methane cycling processes and associated microbial communities in Lake Chaohu sediments
inferred← citeshttps://doi.org/10.1016/j.ibiod.2025.106211openalex-snapshot
Response characteristics of microbial community in soil cocontaminated with heavy metals and chlorinated hydrocarbons: A field study at a demolished electroplating plant site
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.146600openalex-snapshot
Multi-omic analysis reveals the role of coagulation factor family genes and their predictive value for immune checkpoint inhibitors efficacy in gastric cancer
inferred← citeshttps://doi.org/10.1016/j.indcrop.2024.119000openalex-snapshot
Integrated microbiology and metabolomics analysis reveal patterns and mechanisms for improving the yield and alkaloid content of Fritillaria cirrhosa by nitrogen fertilization
inferred← citeshttps://doi.org/10.1016/j.indcrop.2025.120967openalex-snapshot
Light quality modulates yields and secondary metabolite accumulation in Fritillaria cirrhosa: Insights from rhizosphere metabolomics and microbiomics
inferred← citeshttps://doi.org/10.1016/j.indcrop.2025.121938openalex-snapshot
Fumigation-driven restructuring of soil microbial ecosystems enhances endangered Fritillaria cirrhosa productivity and secondary metabolite biosynthesis: Insights from metabolomics and microbiome profiling
inferred← citeshttps://doi.org/10.1016/j.indcrop.2026.122689openalex-snapshot
Integrative multi-omics analyses reveal species-specific microbiome–metabolite patterns across the leaves, tubers, and rhizosphere of five yam (Dioscorea) species
inferred← citeshttps://doi.org/10.1016/j.indcrop.2026.122995openalex-snapshot
Restoration of continuous cropping obstacles by microbial inoculants and mineral amendment in flue-cured tobacco
inferred← citeshttps://doi.org/10.1016/j.indcrop.2026.123624openalex-snapshot
Understory N deposition amplifies the contrasting effects of organic and inorganic N on soil N2O emissions in a Moso bamboo forest
inferred← citeshttps://doi.org/10.1016/j.indcrop.2026.124414openalex-snapshot
Unraveling the growth-promoting mechanisms of PGPR combined with organic fertilizer in bamboo shoots: Insights from rhizosphere microbial restructuring and metabolomic profiling
inferred← citeshttps://doi.org/10.1016/j.intimp.2025.114474openalex-snapshot
Immunomodulatory effects of Sanghuangporus flavonoids: Key insights into enhancing immunity and restoring immune function
inferred← citeshttps://doi.org/10.1016/j.isci.2025.113578openalex-snapshot
Gut virome characteristics associated with early onset of anemia and neurodevelopmental delay in preterm infants
inferred← citeshttps://doi.org/10.1016/j.isci.2026.117760openalex-snapshot
Evolution of lake microbial structure and function under climatic and anthropogenic forcings: Insights from sedimentary ancient DNA
inferred← citeshttps://doi.org/10.1016/j.jad.2025.119389openalex-snapshot
The development of depressive symptoms in subthreshold depression adolescents with a history of childhood maltreatment: A longitudinal network analysis
inferred← citeshttps://doi.org/10.1016/j.jare.2025.11.002openalex-snapshot
Multitrophic biodiversity drives soil phosphorus mobilization in subtropical ecosystems
inferred← citeshttps://doi.org/10.1016/j.jece.2025.116127openalex-snapshot
Occurrence and distribution of PAHs and indigenous bacteria in the soil surrounding the industrial parks of Beijing: A systematic field study
inferred← citeshttps://doi.org/10.1016/j.jece.2025.118717openalex-snapshot
Unraveling distinct responses of abundant and rare bacterial taxa during nitrogen removal process transition under prolonged antibiotic stress
inferred← citeshttps://doi.org/10.1016/j.jece.2025.118846openalex-snapshot
Eutrophication level constrains treatment efficacy of calcium peroxide in aquatic environments
inferred← citeshttps://doi.org/10.1016/j.jece.2026.122006openalex-snapshot
Nutrient accumulation and redox conditions shape lake bacterial communities: A dual-medium assessment of closed coal-mining subsidence versus natural lakes
inferred← citeshttps://doi.org/10.1016/j.jenvman.2022.115645openalex-snapshot
Spatial dynamics of prokaryotic microbial communities in sediments of the Yellow Sea: Assembly process, co-occurrence relationships, and environmental implications
inferred← citeshttps://doi.org/10.1016/j.jenvman.2024.122318openalex-snapshot
Biochar mitigates the stimulatory effects of straw incorporation on N2O emission and N2O/(N2O + N2) ratio in upland soil
inferred← citeshttps://doi.org/10.1016/j.jenvman.2024.122428openalex-snapshot
Opposite effects of soil pH on bacteria and fungi β diversity in forests at a continental scale
inferred← citeshttps://doi.org/10.1016/j.jenvman.2024.122462openalex-snapshot
Enhanced soil microbial stability is associated with soil organic carbon storage under high-altitude forestation
inferred← citeshttps://doi.org/10.1016/j.jenvman.2024.123638openalex-snapshot
Soil carbon fractions drive microbial community assembly processes during forest succession
inferred← citeshttps://doi.org/10.1016/j.jenvman.2024.123735openalex-snapshot
Forest management impacts on soil phosphorus cycling: Insights from metagenomics in Moso bamboo plantations
inferred← citeshttps://doi.org/10.1016/j.jenvman.2025.127432openalex-snapshot
Linking soil organic carbon mineralization to microbial interactions during alpine grassland degradation
inferred← citeshttps://doi.org/10.1016/j.jenvman.2025.127808openalex-snapshot
Soil microbes benefit enhancing stability of soil organic carbon pools under mixed-species plantations
inferred← citeshttps://doi.org/10.1016/j.jes.2025.07.053openalex-snapshot
Urban park metagenomics highlights sediments as a potential hotspot for CH4 and N2O emission across diverse habitats
inferred← citeshttps://doi.org/10.1016/j.jes.2026.03.073openalex-snapshot
Glacial melting enhances the influence of microbial cross-domain interactions on dissolved organic carbon dynamics across the high-altitude glacier-proglacial lake-river continuum
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