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Cross‐linked peptide identification: A computational forest of algorithms
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Outgoing claims: the papers this work cites, builds on, or argues with.
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A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
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CrossWork: Software-assisted identification of cross-linked peptides
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The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
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Xlink Analyzer: Software for analysis and visualization of cross-linking data in the context of three-dimensional structures
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MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides
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Mass Spectrometry Identifiable Cross-Linking Strategy for Studying Protein−Protein Interactions
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Integrated Workflow for Structural Proteomics Studies Based on Cross-Linking/Mass Spectrometry with an MS/MS Cleavable Cross-Linker
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Xilmass: A New Approach toward the Identification of Cross-Linked Peptides
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ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data
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Identification of cross-linked peptides from complex samples
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False discovery rate estimation for cross-linked peptides identified by mass spectrometry
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Automated structure modeling of large protein assemblies using crosslinks as distance restraints
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Determination of transmembrane protein structure by disulfide cross-linking: the Escherichia coli Tar receptor.
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Xwalk: computing and visualizing distances in cross-linking experiments
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AnchorMS: a bioinformatics tool to derive structural information from the mass spectra of cross-linked protein complexes
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XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data
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xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints
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jPOSTrepo: an international standard data repository for proteomes
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UniProt: the universal protein knowledgebase
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InterPro in 2017—beyond protein family and domain annotations
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Chemical cross‐linking with thiol‐cleavable reagents combined with differential mass spectrometric peptide mapping—A novel approach to assess intermolecular protein contacts
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Computer‐assisted mass spectrometric analysis of naturally occurring and artificially introduced cross‐links in proteins and protein complexes
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compomics-utilities: an open-source Java library for computational proteomics
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CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
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What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Rapid Mapping of Protein Interactions Using Tag‐Transfer Photocrosslinkers
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Progress in methodologies and quality‐control strategies in protein cross‐linking mass spectrometry
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N-propionyl thiosuccinimide linker upon hydrolysis becomes into a cleavable crosslinker by a gas phase metastable fragmentation and makes more reliable the conjugation sites identification.
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