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Kojak: Efficient Analysis of Chemically Cross-Linked Protein Complexes

https://doi.org/10.1021/pr501321h
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jms.559openalex-snapshot
Chemical cross‐linking and mass spectrometry for mapping three‐dimensional structures of proteins and protein complexes
inferredcites →https://doi.org/10.1002/pmic.201100516openalex-snapshot
In vivo protein complex topologies: Sights through a cross‐linking lens
inferredcites →https://doi.org/10.1002/pmic.201200439openalex-snapshot
Comet: An open‐source MS / MS sequence database search tool
inferredcites →https://doi.org/10.1002/rcm.4066openalex-snapshot
Synthesis of biotin‐tagged chemical cross‐linkers and their applications for mass spectrometry
inferredcites →https://doi.org/10.1016/1044-0305(94)80016-2openalex-snapshot
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
inferredcites →https://doi.org/10.1016/j.jsb.2010.10.014openalex-snapshot
The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
inferredcites →https://doi.org/10.1021/ac051339copenalex-snapshot
Pro-CrossLink. Software Tool for Protein Cross-Linking and Mass Spectrometry
inferredcites →https://doi.org/10.1021/ac0700833openalex-snapshot
High-Speed Data Reduction, Feature Detection, and MS/MS Spectrum Quality Assessment of Shotgun Proteomics Data Sets Using High-Resolution Mass Spectrometry
inferredcites →https://doi.org/10.1021/ac202637nopenalex-snapshot
Designer Reagents for Mass Spectrometry-Based Proteomics: Clickable Cross-Linkers for Elucidation of Protein Structures and Interactions
inferredcites →https://doi.org/10.1021/ac400666popenalex-snapshot
Discovery of Undefined Protein Cross-Linking Chemistry: A Comprehensive Methodology Utilizing 18O-Labeling and Mass Spectrometry
inferredcites →https://doi.org/10.1021/ac801646fopenalex-snapshot
Characterization of Protein Cross-Links via Mass Spectrometry and an Open-Modification Search Strategy
inferredcites →https://doi.org/10.1021/ac902615gopenalex-snapshot
A Photocleavable and Mass Spectrometry Identifiable Cross-Linker for Protein Interaction Studies
inferredcites →https://doi.org/10.1021/pr070035zopenalex-snapshot
Informatics Strategies for Large-Scale Novel Cross-Linking Analysis
inferredcites →https://doi.org/10.1021/pr070234iopenalex-snapshot
Shotgun Cross-Linking Analysis for Studying Quaternary and Tertiary Protein Structures
inferredcites →https://doi.org/10.1021/pr1001115openalex-snapshot
Isotope Signatures Allow Identification of Chemically Cross-Linked Peptides by Mass Spectrometry: A Novel Method to Determine Interresidue Distances in Protein Structures through Cross-Linking
inferredcites →https://doi.org/10.1021/pr100572uopenalex-snapshot
Improved Strategies for Rapid Identification of Chemically Cross-Linked Peptides Using Protein Interaction Reporter Technology
inferredcites →https://doi.org/10.1021/pr100848aopenalex-snapshot
Xlink-Identifier: An Automated Data Analysis Platform for Confident Identifications of Chemically Cross-Linked Peptides Using Tandem Mass Spectrometry
inferredcites →https://doi.org/10.1021/pr800420sopenalex-snapshot
A Fast SEQUEST Cross Correlation Algorithm
inferredcites →https://doi.org/10.1021/pr900816aopenalex-snapshot
Comparison of Database Search Strategies for High Precursor Mass Accuracy MS/MS Data
inferredcites →https://doi.org/10.1021/pr901163dopenalex-snapshot
Detecting Cross-Linked Peptides by Searching against a Database of Cross-Linked Peptide Pairs
inferredcites →https://doi.org/10.1021/pr9011816openalex-snapshot
xComb: A Cross-Linked Peptide Database Approach to Protein−Protein Interaction Analysis
inferredcites →https://doi.org/10.1038/nature11964openalex-snapshot
SCFFBXL3 ubiquitin ligase targets cryptochromes at their cofactor pocket
inferredcites →https://doi.org/10.1038/nmeth.1192openalex-snapshot
Identification of cross-linked peptides from large sequence databases
inferredcites →https://doi.org/10.1038/nmeth.2099openalex-snapshot
Identification of cross-linked peptides from complex samples
inferredcites →https://doi.org/10.1038/nmeth.2103openalex-snapshot
False discovery rate estimation for cross-linked peptides identified by mass spectrometry
inferredcites →https://doi.org/10.1038/nmeth1113openalex-snapshot
Semi-supervised learning for peptide identification from shotgun proteomics datasets
inferredcites →https://doi.org/10.1039/b920876copenalex-snapshot
A new cross-linking strategy: protein interaction reporter (PIR) technology for protein–protein interaction studies
inferredcites →https://doi.org/10.1073/pnas.1320298111openalex-snapshot
Chemical cross-linking/mass spectrometry targeting acidic residues in proteins and protein complexes
inferredcites →https://doi.org/10.1074/mcp.m110.006841openalex-snapshot
Cross-linking Measurements of In Vivo Protein Complex Topologies
inferredcites →https://doi.org/10.1074/mcp.m111.007690openalex-snapshot
iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
inferredcites →https://doi.org/10.1074/mcp.m113.034009openalex-snapshot
Matching Cross-linked Peptide Spectra: Only as Good as the Worse Identification
inferredcites →https://doi.org/10.1074/mcp.m800020-mcp200openalex-snapshot
CrossSearch, a User-friendly Search Engine for Detecting Chemically Cross-linked Peptides in Conjugated Proteins
inferredcites →https://doi.org/10.1074/mcp.m800021-mcp200openalex-snapshot
In-depth Analysis of Tandem Mass Spectrometry Data from Disparate Instrument Types
inferredcites →https://doi.org/10.1074/mcp.m800232-mcp200openalex-snapshot
Identification of Protein-Protein Interactions and Topologies in Living Cells with Chemical Cross-linking and Mass Spectrometry
inferredcites →https://doi.org/10.1074/mcp.r000001-mcp201openalex-snapshot
Probing Native Protein Structures by Chemical Cross-linking, Mass Spectrometry, and Bioinformatics
inferredcites →https://doi.org/10.1074/mcp.t400016-mcp200openalex-snapshot
Isotopically Coded Cleavable Cross-linker for Studying Protein-Protein Interaction and Protein Complexes
inferredcites →https://doi.org/10.1186/1471-2105-11-64openalex-snapshot
ICC-CLASS: isotopically-coded cleavable crosslinking analysis software suite
inferredcites →https://doi.org/10.1186/1471-2105-6-s2-s9openalex-snapshot
CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0105688openalex-snapshot
Structural and Biochemical Characterization of the Cop9 Signalosome CSN5/CSN6 Heterodimer

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Polyphenol‐oxidase‐catalyzed cross‐linking of Ara h 2: reaction sites and effect on structure and allergenicity
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Cross‐linked peptide identification: A computational forest of algorithms
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Cross‐linking reactions in food proteins and proteomic approaches for their detection
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Mass Spectrometry Structural Proteomics Enabled by Limited Proteolysis and Cross‐Linking
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Progress in methodologies and quality‐control strategies in protein cross‐linking mass spectrometry
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Improved single-step enrichment methods of cross-linked products for protein structure analysis and protein interaction mapping
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An Open Data Format for Visualization and Analysis of Cross-Linked Mass Spectrometry Results
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Identifying transglutaminase reaction products via mass spectrometry as exemplified by the MUC2 mucin - Pitfalls and traps
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Chemical Cross-Linking Enables Drafting ClpXP Proximity Maps and Taking Snapshots of In Situ Interaction Networks
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New insights into the mechanisms of age-related protein-protein crosslinking in the human lens
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Structural proteomics of a bacterial mega membrane protein complex: FtsH-HflK-HflC
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An experimentally generated peptide database increases the sensitivity of XL-MS with complex samples
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Structure of γ-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure
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Higher-Order Structural Organization of the Mitochondrial Proteome Charted by In Situ Cross-Linking Mass Spectrometry
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A Roadmap for Improving Reliability and Data Sharing in Crosslinking Mass Spectrometry
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AlphaCross-XL: A Seamless Tool for Automated and Proteome-Scale Mapping of Cross-Linked Peptides Onto 3D Protein Structures
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On the utility of the extracted ion chromatograms for assigning the conjugation sites and side reactions in bioconjugates synthesized by the maleimide-thiol chemistry
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A Bifunctional Role for the UHRF1 UBL Domain in the Control of Hemi-methylated DNA-Dependent Histone Ubiquitylation
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The switch from client holding to folding in the Hsp70/Hsp90 chaperone machineries is regulated by a direct interplay between co-chaperones
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Combining cryo-electron microscopy (cryo-EM) and cross-linking mass spectrometry (CX-MS) for structural elucidation of large protein assemblies
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Insight into the Structure of the “Unstructured” Tau Protein
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Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry
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Leveraging crosslinking mass spectrometry in structural and cell biology
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Cross-linking and mass spectrometry as a tool for studying the structural biology of ribonucleoproteins
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Cullin-independent recognition of HHARI substrates by a dynamic RBR catalytic domain
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Protein Tertiary Structure by Crosslinking/Mass Spectrometry
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Chemical cross-linking in the structural analysis of protein assemblies
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Exploring Spacer Arm Structures for Designs of Asymmetric Sulfoxide-Containing MS-Cleavable Cross-Linkers
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Decision Tree Searching Strategy to Boost the Identification of Cross-Linked Peptides
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Accurate and Automated High-Coverage Identification of Chemically Cross-Linked Peptides with MaxLynx
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Discovery and Visualization of Uncharacterized Drug–Protein Adducts Using Mass Spectrometry
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High-Sensitivity Proteome-Scale Searches for Crosslinked Peptides Using CRIMP 2.0
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Novel Urazole-Derived MS-Cleavable Cross-Linkers Targeting Tyrosine/Lysine Residues for Protein Structural Analysis
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AIRPred: A Deep Learning Model Predictor for Peptide Intensity Ratios in Cross-Linking Mass Spectrometry Improves Cross-Link Spectrum Matching
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Xilmass: A New Approach toward the Identification of Cross-Linked Peptides
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Optimized Fragmentation Regime for Diazirine Photo-Cross-Linked Peptides
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Probing the Lysine Proximal Microenvironments within Membrane Protein Complexes by Active Dimethyl Labeling and Mass Spectrometry
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Improved Identification of Peptides, Modification Sites, and Cross-Link Sites by Target-Enhanced Accurate Inclusion Mass Screening (TAIMS)
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Expanding the Scope of Cross-Link Identifications by Incorporating Collisional Activated Dissociation and Ultraviolet Photodissociation Methods
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Cross-Linking Mass Spectrometry: An Emerging Technology for Interactomics and Structural Biology
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Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification
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Characterization of Disulfide Linkages in Proteins by 193 nm Ultraviolet Photodissociation (UVPD) Mass Spectrometry
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Characterizing Endogenous Protein Complexes with Biological Mass Spectrometry
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In-Cell Labeling and Mass Spectrometry for Systems-Level Structural Biology
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Cross-Linking Mass Spectrometry for Investigating Protein Conformations and Protein–Protein Interactions─A Method for All Seasons
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Use of Multiple Ion Fragmentation Methods to Identify Protein Cross-Links and Facilitate Comparison of Data Interpretation Algorithms
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LinX: A Software Tool for Uncommon Cross-Linking Chemistry
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The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data
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Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite
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Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline
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Comparative Analysis of Chemical Cross-Linking Mass Spectrometry Data Indicates That Protein STY Residues Rarely React with N -Hydroxysuccinimide Ester Cross-Linkers
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Determination of Protein Monoclonal–Antibody Epitopes by a Combination of Structural Proteomics Methods
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MS Annika 2.0 Identifies Cross-Linked Peptides in MS2–MS3-Based Workflows at High Sensitivity and Specificity
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High-Performance Workflow for Identifying Site-Specific Crosslinks Originating from a Genetically Incorporated, Photoreactive Amino Acid
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XLSearch: a Probabilistic Database Search Algorithm for Identifying Cross-Linked Peptides
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ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data
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CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization
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Exhaustively Identifying Cross-Linked Peptides with a Linear Computational Complexity
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Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus
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Development of in Planta Chemical Cross-Linking-Based Quantitative Interactomics inArabidopsis
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In-Search Assignment of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides
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Proxl (Protein Cross-Linking Database): A Public Server, QC Tools, and Other Major Updates
inferred← citeshttps://doi.org/10.1021/acs.jproteome.9b00114openalex-snapshot
Evaluation of Different Stationary Phases in the Separation of Inter-Cross-Linked Peptides
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Substrate Recognition by the Class II Lanthipeptide Synthetase HalM2
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Functional Proteomics
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Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry
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Accurate Retention Time Prediction Based on Monolinked Peptide Information to Confidently Identify Cross-Linked Peptides
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Innovation in Cross-Linking Mass Spectrometry Workflows: Toward a Comprehensive, Flexible, and Customizable Data Analysis Platform
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The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling
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Proteomics: taking on protein complexes
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Chaperone activation and client binding of a 2-cysteine peroxiredoxin
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A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides
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A synthetic peptide library for benchmarking crosslinking-mass spectrometry search engines for proteins and protein complexes
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Rab1-AMPylation by Legionella DrrA is allosterically activated by Rab1
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Retention time prediction using neural networks increases identifications in crosslinking mass spectrometry
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Phosphorylation activates the yeast small heat shock protein Hsp26 by weakening domain contacts in the oligomer ensemble
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Prosit-XL: enhanced cross-linked peptide identification by fragment intensity prediction to study protein interactions and structures
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XL-MSDigger: a deep learning-based, versatile solution for cross-linking mass spectrometry
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Molecular basis of SIFI activity in the integrated stress response
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Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology
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A cross-linking/mass spectrometry workflow based on MS-cleavable cross-linkers and the MeroX software for studying protein structures and protein–protein interactions
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Quantitative cross-linking/mass spectrometry to elucidate structural changes in proteins and their complexes
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Proteome-wide non-cleavable crosslink identification with MS Annika 3.0 reveals the structure of the C. elegans Box C/D complex
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Molecular damage in aging
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How J-chain ensures the assembly of immunoglobulin IgM pentamers
inferred← citeshttps://doi.org/10.1039/c5sc04196aopenalex-snapshot
Cross-linking and other structural proteomics techniques: how chemistry is enabling mass spectrometry applications in structural biology
inferred← citeshttps://doi.org/10.1039/c6fo01365aopenalex-snapshot
Ara h 2 cross-linking catalyzed by MTGase decreases its allergenicity
inferred← citeshttps://doi.org/10.1039/c8an01582aopenalex-snapshot
Simplified identification of disulfide, trisulfide, and thioether pairs with 213 nm UVPD
inferred← citeshttps://doi.org/10.1039/c9sc00893dopenalex-snapshot
A novel mass spectrometry-cleavable, phosphate-based enrichable and multi-targeting protein cross-linker
inferred← citeshttps://doi.org/10.1039/d0mo00181copenalex-snapshot
Cleavable linkers and their application in MS-based target identification
inferred← citeshttps://doi.org/10.1039/d4an01449aopenalex-snapshot
Characterization by LC-MS/MS analysis of KLH vaccine conjugated with a tick antigen peptide
inferred← citeshttps://doi.org/10.1039/d4ob01058bopenalex-snapshot
Advances in crosslinking chemistry and proximity-enabled strategies: deciphering protein complexes and interactions
inferred← citeshttps://doi.org/10.1063/5.0111492openalex-snapshot
Molecular analysis of Brevibacillus brevis as polyethylene biodegradation agents
inferred← citeshttps://doi.org/10.1073/pnas.1513882112openalex-snapshot
Regulation of outer kinetochore Ndc80 complex-based microtubule attachments by the central kinetochore Mis12/MIND complex
inferred← citeshttps://doi.org/10.1073/pnas.1617220114openalex-snapshot
Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry
inferred← citeshttps://doi.org/10.1073/pnas.1716622115openalex-snapshot
Identification of Wiskott-Aldrich syndrome protein (WASP) binding sites on the branched actin filament nucleator Arp2/3 complex
inferred← citeshttps://doi.org/10.1073/pnas.1718553115openalex-snapshot
Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore–microtubule attachments
inferred← citeshttps://doi.org/10.1073/pnas.2201910120openalex-snapshot
High-resolution structural information of membrane-bound α-synuclein provides insight into the MoA of the anti-Parkinson drug UCB0599
inferred← citeshttps://doi.org/10.1073/pnas.2213765120openalex-snapshot
Disordered region encodes α-crystallin chaperone activity toward lens client γD-crystallin
inferred← citeshttps://doi.org/10.1073/pnas.2425061122openalex-snapshot
Activation mechanism of small heat shock protein HSPB5 revealed by disease-associated mutants
inferred← citeshttps://doi.org/10.1074/jbc.ra119.008735openalex-snapshot
Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Chlamydomonas reinhardtii
inferred← citeshttps://doi.org/10.1074/mcp.o116.058685openalex-snapshot
High Sensitivity Crosslink Detection Coupled With Integrative Structure Modeling in the Mass Spec Studio
inferred← citeshttps://doi.org/10.1074/mcp.r116.061663openalex-snapshot
Development of Large-scale Cross-linking Mass Spectrometry
inferred← citeshttps://doi.org/10.1074/mcp.ra118.000878openalex-snapshot
Apolipoprotein A1 Forms 5/5 and 5/4 Antiparallel Dimers in Human High-density Lipoprotein
inferred← citeshttps://doi.org/10.1074/mcp.ra119.001839openalex-snapshot
Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker
inferred← citeshttps://doi.org/10.1074/mcp.tir120.002186openalex-snapshot
OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS
inferred← citeshttps://doi.org/10.1080/14789450.2017.1362336openalex-snapshot
Protein-protein cross-linking and human health: the challenge of elucidating with mass spectrometry
inferred← citeshttps://doi.org/10.1080/14789450.2018.1509710openalex-snapshot
Identification and characterization of protein cross-links induced by oxidative reactions
inferred← citeshttps://doi.org/10.1080/14789450.2021.1913062openalex-snapshot
Proteomic characterization of the human lens and Cataractogenesis
inferred← citeshttps://doi.org/10.1089/ars.2016.6720openalex-snapshot
Proteomic Characterization of Reversible Thiol Oxidations in Proteomes and Proteins
inferred← citeshttps://doi.org/10.1089/omi.2022.0137openalex-snapshot
Dynamic Interactomics by Cross-Linking Mass Spectrometry: Mapping the Daily Cell Life in Postgenomic Era
inferred← citeshttps://doi.org/10.1093/bib/bbac316openalex-snapshot
SpotLink enables sensitive and precise identification of site nonspecific cross-links at the proteome scale
inferred← citeshttps://doi.org/10.1093/bioinformatics/btae146openalex-snapshot
CLAUDIO: automated structural analysis of cross-linking data
inferred← citeshttps://doi.org/10.1093/bioinformatics/btae233openalex-snapshot
An algorithm for decoy-free false discovery rate estimation in XL-MS/MS proteomics
inferred← citeshttps://doi.org/10.1093/bioinformatics/bty526openalex-snapshot
Xolik: finding cross-linked peptides with maximum paired scores in linear time
inferred← citeshttps://doi.org/10.1093/bioinformatics/btz013openalex-snapshot
Statistical force-field for structural modeling using chemical cross-linking/mass spectrometry distance constraints
inferred← citeshttps://doi.org/10.1093/bioinformatics/btz732openalex-snapshot
The CroCo cross-link converter: a user-centred tool to convert results from cross-linking mass spectrometry experiments
inferred← citeshttps://doi.org/10.1101/097089openalex-snapshot
Exhaustively Identifying Cross-Linked Peptides with a Linear Computational Complexity
inferred← citeshttps://doi.org/10.1101/2021.08.26.457759openalex-snapshot
Accurate and automated high-coverage identification of chemically cross-linked peptides with MaxLynx
inferred← citeshttps://doi.org/10.1101/2023.01.20.524983openalex-snapshot
High sensitivity proteome-scale search for crosslinked peptides using CRIMP 2.0
inferred← citeshttps://doi.org/10.1101/2024.03.20.585841openalex-snapshot
Searching Post-translational Modifications in Cross-linking Mass Spectrometry Data
inferred← citeshttps://doi.org/10.1101/2024.12.02.626349openalex-snapshot
The molecular basis of integrated stress response silencing
inferred← citeshttps://doi.org/10.1101/2024.12.15.627797openalex-snapshot
Prosit-XL: enhanced cross-linked peptide identification by accurate fragment intensity prediction to study protein-protein interactions and protein structures
inferred← citeshttps://doi.org/10.1101/2025.10.27.684587openalex-snapshot
Disorder with consequence: Phosphorylation sites in HSPB5 yield distinct structural outcomes
inferred← citeshttps://doi.org/10.1101/311027openalex-snapshot
Spc110 N-Terminal Domains Act Independently to Mediate Stable γ-Tubulin Small Complex Binding and γ-Tubulin Ring Complex Assembly
inferred← citeshttps://doi.org/10.1101/453811openalex-snapshot
A Stu2-mediated intrinsic tension-sensing pathway promotes chromosome biorientation in vivo
inferred← citeshttps://doi.org/10.1101/821447openalex-snapshot
A synthetic peptide library for benchmarking crosslinking mass spectrometry search engines
inferred← citeshttps://doi.org/10.1104/pp.18.00749openalex-snapshot
Configuration of Ten Light-Harvesting Chlorophyll a/b Complex I Subunits in Chlamydomonas reinhardtii Photosystem I
inferred← citeshttps://doi.org/10.1146/annurev-biodatasci-080917-013516openalex-snapshot
Computational Methods for Understanding Mass Spectrometry–Based Shotgun Proteomics Data
inferred← citeshttps://doi.org/10.1155/2018/1435934openalex-snapshot
Mitoproteomics: Tackling Mitochondrial Dysfunction in Human Disease
inferred← citeshttps://doi.org/10.11575/prism/37902openalex-snapshot
Integrative Structural Model of DNA-PKcs in the Initial Steps of Non-Homologous End Joining
inferred← citeshttps://doi.org/10.1186/s12859-016-1073-yopenalex-snapshot
ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database
inferred← citeshttps://doi.org/10.1186/s12859-023-05473-zopenalex-snapshot
ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis
inferred← citeshttps://doi.org/10.12688/wellcomeopenres.17160.2openalex-snapshot
Identifying and characterising Thrap3, Bclaf1 and Erh interactions using cross-linking mass spectrometry
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1006859openalex-snapshot
Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008423openalex-snapshot
Kinetochore-associated Stu2 promotes chromosome biorientation in vivo
inferred← citeshttps://doi.org/10.1371/journal.ppat.1007508openalex-snapshot
The Vaccinia virion: Filling the gap between atomic and ultrastructure
inferred← citeshttps://doi.org/10.1515/hsz-2018-0443openalex-snapshot
Mass spectrometry of membrane protein complexes
inferred← citeshttps://doi.org/10.15252/embj.2023113565openalex-snapshot
BRCA1/BARD1 intrinsically disordered regions facilitate chromatin recruitment and ubiquitylation
inferred← citeshttps://doi.org/10.15252/msb.20198994openalex-snapshot
An integrated workflow for crosslinking mass spectrometry
inferred← citeshttps://doi.org/10.1534/genetics.114.167775openalex-snapshot
Kinetochore Biorientation in Saccharomyces cerevisiae Requires a Tightly Folded Conformation of the Ndc80 Complex
inferred← citeshttps://doi.org/10.26434/chemrxiv-2023-3g9g6openalex-snapshot
On the utility of the extracted ion chromatograms for assigning the conjugation sites in bioconjugates synthesized by the maleimide-thiol chemistry
inferred← citeshttps://doi.org/10.26434/chemrxiv-2023-3g9g6-v2openalex-snapshot
On the utility of the extracted ion chromatograms for assigning the conjugation sites in bioconjugates synthesized by the maleimide-thiol chemistry
inferred← citeshttps://doi.org/10.26434/chemrxiv-2024-33v24openalex-snapshot
Identifying Site-Specific Crosslinks Originating from a Genetically Incorporated, Photoreactive Amino Acid
inferred← citeshttps://doi.org/10.26434/chemrxiv-2024-80jqwopenalex-snapshot
N-propionyl thiosuccinimide linker upon hydrolysis becomes into a cleavable crosslinker by a gas phase metastable fragmentation and makes more reliable the conjugation sites identification.
inferred← citeshttps://doi.org/10.3389/fpls.2016.00617openalex-snapshot
The Use of Advanced Mass Spectrometry to Dissect the Life-Cycle of Photosystem II
inferred← citeshttps://doi.org/10.3390/biom11030382openalex-snapshot
Interfaces with Structure Dynamics of the Workhorses from Cells Revealed through Cross-Linking Mass Spectrometry (CLMS)
inferred← citeshttps://doi.org/10.3390/biom11040505openalex-snapshot
Analysis of the Dynamic Proteasome Structure by Cross-Linking Mass Spectrometry
inferred← citeshttps://doi.org/10.3791/60311-vopenalex-snapshot
Quaternary Structure Modeling Through Chemical Cross-Linking Mass Spectrometry: Extending TX-MS Jupyter Reports
inferred← citeshttps://doi.org/10.48550/arxiv.2003.00328openalex-snapshot
Mass spectrometry for semi-experimental protein structure determination and modeling
inferred← citeshttps://doi.org/10.48550/arxiv.2007.00383openalex-snapshot
Towards Increased Reliability, Transparency and Accessibility in Crosslinking Mass Spectrometry
inferred← citeshttps://doi.org/10.48550/arxiv.2311.07791openalex-snapshot
Comprehensive Overview of Bottom-up Proteomics using Mass Spectrometry
inferred← citeshttps://doi.org/10.6023/a22010055openalex-snapshot
Research Progress of Protein-Protein Interaction Based on Liquid Chromatography Mass Spectrometry※
inferred← citeshttps://doi.org/10.6084/m9.figshare.24172158openalex-snapshot
Additional file 1 of ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis
inferred← citeshttps://doi.org/10.70675/544c95bfz2ddbz4ecaza12dz64e75d212990openalex-snapshot
New developments in high-resolution mass spectrometry for proteomic analysis applied to cultural heritage : study of intact proteins, their cross-linking and interaction in artworks and museum objects
inferred← citeshttps://doi.org/10.70675/a5d4eb6fz69fdz4101z9552zed56bd1806b4openalex-snapshot
Spectrométrie de masse native et pontage chimique pour l'analyse structurale de complexe protéique
inferred← citeshttps://doi.org/10.70675/ae1b34afz3360z4758zb095z89c58db2a12fopenalex-snapshot
New structural mass spectrometry approaches for the analysis of bacterial protein complexes involved in virulence
inferred← citeshttps://doi.org/10.7554/elife.20352openalex-snapshot
Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer
inferred← citeshttps://doi.org/10.7554/elife.21069openalex-snapshot
The Ndc80 complex bridges two Dam1 complex rings
inferred← citeshttps://doi.org/10.7554/elife.65168openalex-snapshot
CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation
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