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Assessment of CAPRI predictions in rounds 3–5 shows progress in docking procedures
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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An efficient molecular docking using conformational space annealing
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Evaluation of protein docking predictions using Hex 3.1 in CAPRI rounds 1 and 2
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CAPRI: A Critical Assessment of PRedicted Interactions
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Assessment of blind predictions of protein–protein interactions: Current status of docking methods
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Successful discrimination of protein interactions
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RDOCK: Refinement of rigid‐body protein docking predictions
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Construction of molecular assemblies via docking: Modeling of tetramers with D2 symmetry
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Assessment of progress over the CASP experiments
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Modeling structurally variable regions in homologous proteins with rosetta
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Hydrophobic complementarity in protein–protein docking
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Classification of protein complexes based on docking difficulty
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Geometry‐based flexible and symmetric protein docking
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Docking essential dynamics eigenstructures
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Rapid refinement of protein interfaces incorporating solvation: application to the docking problem
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Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking
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Identification of Protein–Protein Interaction Sites from Docking Energy Landscapes
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The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein–Protein Complexes with an Application to Protein–Protein Docking
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Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations
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Protein Structure Prediction Using Rosetta
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Bridging structural biology and genomics: assessing protein interaction data with known complexes
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HADDOCK: A Protein−Protein Docking Approach Based on Biochemical or Biophysical Information
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Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
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From words to literature in structural proteomics
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Complex between nidogen and laminin fragments reveals a paradigmatic β-propeller interface
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Structural basis of protein phosphatase 1 regulation
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Detailed ab initio prediction of lysozyme–antibody complex with 1.6 Å accuracy
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Automatic Sequence Design of Major Histocompatibility Complex Class I Binding Peptides Impairing CD8+ T Cell Recognition
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A docking analysis of the statistical physics of protein–protein recognition
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ClusPro: an automated docking and discrimination method for the prediction of protein complexes
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M-ZDOCK: a grid-based approach for Cn symmetric multimer docking
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Saccharomyces cerevisiae Elongator mutations confer resistance to the Kluyveromyces lactis zymocin
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PatchDock and SymmDock: servers for rigid and symmetric docking
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High-Throughput Computational and Experimental Techniques in Structural Genomics
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MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
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Rapid comparison of protein structures
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Protein–protein docking with a reduced protein model accounting for side‐chain flexibility
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A graph‐theory algorithm for rapid protein side‐chain prediction
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Accurate and efficient loop selections by the DFIRE‐based all‐atom statistical potential
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Improved side‐chain modeling for protein–protein docking
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Physicochemical and residue conservation calculations to improve the ranking of protein–protein docking solutions
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What If There Are Only 30,000 Human Genes?
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Automated Protein Structure Homology Modeling: A Progress Report
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Computational Protein Design Is a Challenge for Implicit Solvation Models
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Assessing Structural Predictions of Protein–Protein Recognition: The CAPRI Experiment
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Docking and Scoring for Structure‐based Drug Design
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Protein‐Protein Interaction Modeling and Inhibition: The TAU Bioinfo3D Perspective
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Protein–protein docking dealing with the unknown
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Flexible protein‐protein docking based on Best‐First search algorithm
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A large decoy set of protein–protein complexes produced by flexible docking
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SDOCK: A global protein‐protein docking program using stepwise force‐field potentials
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A nonredundant structure dataset for benchmarking protein‐RNA computational docking
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Focused grid‐based resampling for protein docking and mapping
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Fast and accurate grid representations for atom‐based docking with partner flexibility
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Modeling Complexes of Transmembrane Proteins: Systematic Analysis of ProteinProtein Docking Tools
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Structural modeling of histone methyltransferase complex Set1C from Saccharomyces cerevisiae using constraint‐based docking
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Feature‐based classification of native and non‐native protein–protein interactions: Comparing supervised and semi‐supervised learning approaches
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Modeling side‐chains using molecular dynamics improve recognition of binding region in CAPRI targets
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Docking essential dynamics eigenstructures
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Progress in computation and amide hydrogen exchange for prediction of protein–protein complexes
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A correlation‐based method for the enhancement of scoring functions on funnel‐shaped energy landscapes
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Scoring a diverse set of high‐quality docked conformations: A metascore based on electrostatic and desolvation interactions
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Computational model for the IGF‐II/IGF2r complex that is predictive of mutational and surface plasmon resonance data
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PIPER: An FFT‐based protein docking program with pairwise potentials
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PIER: Protein interface recognition for structural proteomics
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A protein‐specifically adapted scoring function for the reranking of docking solutions
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Flexible relaxation of rigid‐body docking solutions
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pyDock: Electrostatics and desolvation for effective scoring of rigid‐body protein–protein docking
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Constructing ensembles of flexible fragments in native proteins by iterative stochastic elimination is relevant to protein–protein interfaces
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Identification of near‐native structures by clustering protein docking conformations
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FireDock: Fast interaction refinement in molecular docking
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A simple reference state makes a significant improvement in near‐native selections from structurally refined docking decoys
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Modeling the structure of mAb 14B7 bound to the anthrax protective antigen
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Context shapes: Efficient complementary shape matching for protein–protein docking
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Protein–protein binding is often associated with changes in protonation state
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Large‐scale characteristics of the energy landscape in protein–protein interactions
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Implicit flexibility in protein docking: Cross‐docking and local refinement
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HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets
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SOFTDOCK application to protein–protein interaction benchmark and CAPRI
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Protein–protein docking: Progress in CAPRI rounds 6–12 using a combination of methods: The introduction of steered solvated molecular dynamics
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Protein–protein docking in CAPRI using ATTRACT to account for global and local flexibility
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Assessing the energy landscape of CAPRI targets by FunHunt
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The performance of ZDOCK and ZRANK in rounds 6–11 of CAPRI
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A holistic approach to protein docking
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A general approach for developing system‐specific functions to score protein–ligand docked complexes using support vector inductive logic programming
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Prediction and scoring of docking poses with pyDock
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Docking and scoring protein complexes: CAPRI 3rd Edition
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Protein–protein docking by simulating the process of association subject to biochemical constraints
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The size of the intermolecular energy funnel in protein–protein interactions
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An iterative knowledge‐based scoring function for protein–protein recognition
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Similar chemistry, but different bond preferences in inter versus intra‐protein interactions
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Docking analysis of transient complexes: Interaction of ferredoxin‐NADP+ reductase with ferredoxin and flavodoxin
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Discrimination of near‐native structures in protein–protein docking by testing the stability of local minima
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Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes
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Principles of flexible protein–protein docking
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Consensus scoring for enriching near‐native structures from protein–protein docking decoys
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Toward high‐resolution homology modeling of antibody Fv regions and application to antibody–antigen docking
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Combining interface core and whole interface descriptors in postscan processing of protein‐protein docking models
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Present and future challenges and limitations in protein–protein docking
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FiberDock: Flexible induced‐fit backbone refinement in molecular docking
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Performance of ZDOCK and ZRANK in CAPRI rounds 13–19
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A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13–19
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Optimization of pyDock for the new CAPRI challenges: Docking of homology‐based models, domain–domain assembly and protein‐RNA binding
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An integrated suite of fast docking algorithms
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CAPRI targets T29–T42: Proving ground for new docking procedures
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MDockPP: A hierarchical approach for protein‐protein docking and its application to CAPRI rounds 15–19
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Binding site prediction and improved scoring during flexible protein–protein docking with ATTRACT
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Docking and scoring protein interactions: CAPRI 2009
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Blind predictions of protein interfaces by docking calculations in CAPRI
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SymmRef: A flexible refinement method for symmetric multimers
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Quantitative use of chemical shifts for the modeling of protein complexes
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Enhancing systematic protein–protein docking methods using ray casting: Application to ATTRACT
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A novel method for protein–protein interaction site prediction using phylogenetic substitution models
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On the use of distance constraints in protein–protein docking computations
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Optimized grid‐based protein–protein docking as a global search tool followed by incorporating experimentally derivable restraints
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H‐bond network optimization in protein–protein complexes: Are all‐atom force field scores enough?
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Multi‐LZerD: Multiple protein docking for asymmetric complexes
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3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic‐level energy minimization
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Sampling and scoring: A marriage made in heaven
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Defining the limits of homology modeling in information‐driven protein docking
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Predicting protein–DNA interactions by full search computational docking
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Flexible docking and refinement with a coarse‐grained protein model using ATTRACT
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How good is automated protein docking?
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Improved flexible refinement of protein docking in CAPRI rounds 22–27
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Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20–27
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Docking, scoring, and affinity prediction in CAPRI
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Inclusion of the orientational entropic effect and low‐resolution experimental information for protein–protein docking in Critical Assessment of PRedicted Interactions (CAPRI)
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Intuitive, but not simple: Including explicit water molecules in protein–protein docking simulations improves model quality
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Score_set: A CAPRI benchmark for scoring protein complexes
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iATTRACT: Simultaneous global and local interface optimization for protein–protein docking refinement
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Native fold and docking pose discrimination by the same residue‐based scoring function
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Lessons from (co‐)evolution in the docking of proteins and peptides for CAPRI Rounds 28–35
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Performance of MDockPP in CAPRI rounds 28‐29 and 31‐35 including the prediction of water‐mediated interactions
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Predicting protein conformational changes for unbound and homology docking: learning from intrinsic and induced flexibility
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Modeling protein–protein and protein–peptide complexes: CAPRI 6th edition
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A machine learning approach for ranking clusters of docked protein‐protein complexes by pairwise cluster comparison
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New additions to the C lus P ro server motivated by CAPRI
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FlexPepDock lessons from CAPRI peptide–protein rounds and suggested new criteria for assessment of model quality and utility
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Addressing recent docking challenges: A hybrid strategy to integrate template‐based and free protein‐protein docking
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Refinement of protein‐protein complexes in contact map space with metadynamics simulations
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Enhanced sampling of protein conformational states for dynamic cross‐docking within the protein‐protein docking server SwarmDock
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An overview of data‐driven HADDOCK strategies in CAPRI rounds 38‐45
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Modeling protein‐protein, protein‐peptide, and protein‐oligosaccharide complexes: CAPRI 7th edition
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Modeling beta‐sheet peptide‐protein interactions: Rosetta FlexPepDock in CAPRI rounds 38‐45
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Challenges and opportunities of automated protein‐protein docking: HDOCK server vs human predictions in CAPRI Rounds 38‐46
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Performance of human and server prediction in CAPRI rounds 38‐45
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Simplified geometric representations of protein structures identify complementary interaction interfaces
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Moving pictures: Reassessing docking experiments with a dynamic view of protein interfaces
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Assessment of the CASP14 assembly predictions
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Performance of Hybrid Strategies Combining MDockPP and AlphaFold2 in CAPRI Rounds 47–55
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Biomolecular Interaction Prediction in the Pre‐ and Post‐ AlphaFold Era: The 8th CAPRI Evaluation
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Navigating the Pre‐ and Post‐ AlphaFold Divide: CAPRI 8th Evaluation Meeting, February 12–14, Grenoble, FR
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From Traditional Methods to Deep Learning Approaches: Advances in Protein–Protein Docking
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Knowledge-Based Energy Functions for Computational Studies of Proteins
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Challenges of Protein-Protein Docking of the Membrane Proteins
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Predictions of Protein-Protein Interactions at the Atomic Scale
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Statistical Contact Potentials in Protein Coarse-Grained Modeling: From Pair to Multi-body Potentials
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Analysis and Prediction of Protein Quaternary Structure
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Integrative Structure Determination of Protein Assemblies by Satisfaction of Spatial Restraints
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Docking Predictions of Protein-Protein Interactions and Their Assessment: The CAPRI Experiment
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Computational Methods Applicable to the Discovery of Small-Molecule Inhibitors of Protein-Protein Interactions
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Localization of ligand binding site in proteins identified in silico
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Automatic prediction of flexible regions improves the accuracy of protein-protein docking models
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WeNMR: Structural Biology on the Grid
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Variability in docking success rates due to dataset preparation
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A simple and reliable approach to docking protein–protein complexes from very sparse NOE-derived intermolecular distance restraints
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Protein–Protein Docking: Past, Present, and Future
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A holistic molecular docking approach for predicting protein-protein complex structure
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Network analysis of protein-protein interaction
inferred← citeshttps://doi.org/10.1007/s12539-012-0118-9openalex-snapshot
Computer aided subunit vaccine design against pathogenic Leptospira serovars
inferred← citeshttps://doi.org/10.1016/b0-08-045044-x/00241-8openalex-snapshot
Introduction to Computer-Assisted Drug Design – Overview and Perspective for the Future
inferred← citeshttps://doi.org/10.1016/b0-08-045044-x/00250-9openalex-snapshot
Structural, Energetic, and Dynamic Aspects of Ligand–Receptor Interactions
inferred← citeshttps://doi.org/10.1016/bs.mie.2022.11.003openalex-snapshot
Multi-state modeling of antibody-antigen complexes with SAXS profiles and deep-learning models
inferred← citeshttps://doi.org/10.1016/j.bbabio.2006.06.005openalex-snapshot
Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations
inferred← citeshttps://doi.org/10.1016/j.bbamcr.2008.02.017openalex-snapshot
Structural model of a complex between the heterotrimeric G protein, Gsα, and tubulin
inferred← citeshttps://doi.org/10.1016/j.bbapap.2006.08.002openalex-snapshot
Predicting 3D structures of transient protein–protein complexes by homology
inferred← citeshttps://doi.org/10.1016/j.bbrc.2008.09.119openalex-snapshot
A molecular modeling study of the interaction between SRP-receptor complex and peptide translocon
inferred← citeshttps://doi.org/10.1016/j.bpc.2007.12.005openalex-snapshot
Amino acid network and its scoring application in protein–protein docking
inferred← citeshttps://doi.org/10.1016/j.bpj.2015.12.038openalex-snapshot
Cryo-EM Data Are Superior to Contact and Interface Information in Integrative Modeling
inferred← citeshttps://doi.org/10.1016/j.canlet.2006.07.006openalex-snapshot
The TCL1 oncoprotein binds the RNase PH domains of the PNPase exoribonuclease without affecting its RNA degrading activity
inferred← citeshttps://doi.org/10.1016/j.cellsig.2014.09.008openalex-snapshot
Mechanism of enzymatic reaction and protein–protein interactions of PLD from a 3D structural model
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2007.03.010openalex-snapshot
Simulation of conformational changes occurring when a protein interacts with its receptor
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.04.048openalex-snapshot
Conservation of binding properties in protein models
inferred← citeshttps://doi.org/10.1016/j.drudis.2014.02.005openalex-snapshot
Search strategies and evaluation in protein–protein docking: principles, advances and challenges
inferred← citeshttps://doi.org/10.1016/j.drudis.2015.03.007openalex-snapshot
Exploring the potential of global protein–protein docking: an overview and critical assessment of current programs for automatic ab initio docking
inferred← citeshttps://doi.org/10.1016/j.fluid.2005.12.044openalex-snapshot
Molecular thermodynamics for charged biomacromolecules
inferred← citeshttps://doi.org/10.1016/j.gene.2008.06.014openalex-snapshot
Using protein binding site prediction to improve protein docking
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2017.11.087openalex-snapshot
Insights into the structural characteristics and substrate binding analysis of chondroitin AC lyase (PsPL8A) from Pedobacter saltans
inferred← citeshttps://doi.org/10.1016/j.jmb.2005.11.036openalex-snapshot
Structure-based Prediction of bZIP Partnering Specificity
inferred← citeshttps://doi.org/10.1016/j.jmb.2006.09.042openalex-snapshot
Biological Units and their Effect upon the Properties and Prediction of Protein–Protein Interactions
inferred← citeshttps://doi.org/10.1016/j.jmb.2007.07.050openalex-snapshot
Protein–Protein Docking with Backbone Flexibility
inferred← citeshttps://doi.org/10.1016/j.jmb.2008.08.002openalex-snapshot
Identification of Protein Interaction Partners and Protein–Protein Interaction Sites
inferred← citeshttps://doi.org/10.1016/j.jmb.2009.12.053openalex-snapshot
Rapid Structural Characterization of Human Antibody–Antigen Complexes through Experimentally Validated Computational Docking
inferred← citeshttps://doi.org/10.1016/j.jmb.2010.08.029openalex-snapshot
Structural Characterization of Protein–Protein Complexes by Integrating Computational Docking with Small-angle Scattering Data
inferred← citeshttps://doi.org/10.1016/j.jmb.2011.03.006openalex-snapshot
Zinc Binding to the Tyr402 and His402 Allotypes of Complement Factor H: Possible Implications for Age-Related Macular Degeneration
inferred← citeshttps://doi.org/10.1016/j.jmb.2019.11.009openalex-snapshot
Integrative Modelling of Biomolecular Complexes
inferred← citeshttps://doi.org/10.1016/j.jmb.2024.168540openalex-snapshot
CAPRI-Q: The CAPRI resource evaluating the quality of predicted structures of protein complexes
inferred← citeshttps://doi.org/10.1016/j.jmgm.2016.04.001openalex-snapshot
Investigating the importance of Delaunay-based definition of atomic interactions in scoring of protein–protein docking results
inferred← citeshttps://doi.org/10.1016/j.jsb.2010.09.023openalex-snapshot
Macromolecular docking restrained by a small angle X-ray scattering profile
inferred← citeshttps://doi.org/10.1016/j.jsb.2011.04.001openalex-snapshot
Rapid identification of protein–protein interfaces for the construction of a complex model based on multiple unassigned signals by using time-sharing NMR measurements
inferred← citeshttps://doi.org/10.1016/j.sbi.2006.02.002openalex-snapshot
Flexible protein–protein docking
inferred← citeshttps://doi.org/10.1016/j.sbi.2006.03.003openalex-snapshot
High-resolution protein–protein docking
inferred← citeshttps://doi.org/10.1016/j.sbi.2007.06.001openalex-snapshot
The protein folding problem: when will it be solved?
inferred← citeshttps://doi.org/10.1016/j.sbi.2009.02.008openalex-snapshot
Convergence and combination of methods in protein–protein docking
inferred← citeshttps://doi.org/10.1016/j.sbi.2017.04.006openalex-snapshot
Computational modeling of protein assemblies
inferred← citeshttps://doi.org/10.1016/j.sbi.2017.10.006openalex-snapshot
The computational prediction of protein assemblies
inferred← citeshttps://doi.org/10.1016/j.str.2005.11.022openalex-snapshot
Structural Model of the mAb 806-EGFR Complex Using Computational Docking followed by Computational and Experimental Mutagenesis
inferred← citeshttps://doi.org/10.1016/j.str.2009.10.008openalex-snapshot
Identification of Structural Mechanisms of HIV-1 Protease Specificity Using Computational Peptide Docking: Implications for Drug Resistance
inferred← citeshttps://doi.org/10.1016/j.str.2011.04.006openalex-snapshot
Protein-Protein Complex Structure Predictions by Multimeric Threading and Template Recombination
inferred← citeshttps://doi.org/10.1016/j.str.2015.05.021openalex-snapshot
Fully Blind Peptide-Protein Docking with pepATTRACT
inferred← citeshttps://doi.org/10.1016/j.str.2020.06.006openalex-snapshot
Performance and Its Limits in Rigid Body Protein-Protein Docking
inferred← citeshttps://doi.org/10.1016/j.ymeth.2006.07.026openalex-snapshot
Membrane protein prediction methods
inferred← citeshttps://doi.org/10.1016/s0076-6879(09)67012-9openalex-snapshot
The Basic Concepts of Molecular Modeling
inferred← citeshttps://doi.org/10.1016/s1872-1508(06)60023-5openalex-snapshot
Scoring Function for the Other-type Protein Complexe
inferred← citeshttps://doi.org/10.1017/cbo9780511730412.007openalex-snapshot
Free-energy calculations in structure-based drug design
inferred← citeshttps://doi.org/10.1017/s0033583508004708openalex-snapshot
Protein–protein interaction and quaternary structure
inferred← citeshttps://doi.org/10.1017/s0033583513000024openalex-snapshot
Protonation and pK changes in protein–ligand binding
inferred← citeshttps://doi.org/10.1021/acs.biochem.7b00643openalex-snapshot
Combining H/D Exchange Mass Spectrometry and Computational Docking To Derive the Structure of Protein–Protein Complexes
inferred← citeshttps://doi.org/10.1021/acs.jcim.0c00897openalex-snapshot
Improved Accuracy for Modeling PROTAC-Mediated Ternary Complex Formation and Targeted Protein Degradation via New In Silico Methodologies
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c01483openalex-snapshot
Inclusion of Desolvation Energy into Protein–Protein Docking through Atomic Contact Potentials
inferred← citeshttps://doi.org/10.1021/acs.jcim.2c00025openalex-snapshot
PPI-HotspotDB: Database of Protein–Protein Interaction Hot Spots
inferred← citeshttps://doi.org/10.1021/acs.jcim.3c01154openalex-snapshot
Rational Prediction of PROTAC-Compatible Protein–Protein Interfaces by Molecular Docking
inferred← citeshttps://doi.org/10.1021/acs.jcim.5c00614openalex-snapshot
P4ward: An Automated Modeling Platform for Protac Ternary Complexes
inferred← citeshttps://doi.org/10.1021/acs.jcim.5c01029openalex-snapshot
Exploring Protein–Protein Docking Tools: Comprehensive Insights into Traditional and Deep-Learning Approaches
inferred← citeshttps://doi.org/10.1021/acs.jcim.5c01084openalex-snapshot
PepPCBench is a Comprehensive Benchmarking Framework for Protein–Peptide Complex Structure Prediction
inferred← citeshttps://doi.org/10.1021/acs.jcim.6b00066openalex-snapshot
Model Building of Antibody–Antigen Complex Structures Using GBSA Scores
inferred← citeshttps://doi.org/10.1021/acs.jctc.0c00476openalex-snapshot
Bayesian Active Learning for Optimization and Uncertainty Quantification in Protein Docking
inferred← citeshttps://doi.org/10.1021/acs.jctc.1c01187openalex-snapshot
Approach to Study pH-Dependent Protein Association Using Constant-pH Molecular Dynamics: Application to the Dimerization of β-Lactoglobulin
inferred← citeshttps://doi.org/10.1021/acs.jctc.8b00225openalex-snapshot
ProPOSE: Direct Exhaustive Protein–Protein Docking with Side Chain Flexibility
inferred← citeshttps://doi.org/10.1021/acs.jctc.8b00293openalex-snapshot
Protein-RNA Docking Using ICM
inferred← citeshttps://doi.org/10.1021/acschemneuro.0c00154openalex-snapshot
Circular Dichroism Spectroscopy Identifies the β-Adrenoceptor Agonist Salbutamol As a Direct Inhibitor of Tau Filament Formation in Vitro
inferred← citeshttps://doi.org/10.1021/ci700178wopenalex-snapshot
Molecular Mechanism of the Sea Anemone Toxin ShK Recognizing the Kv1.3 Channel Explored by Docking and Molecular Dynamic Simulations
inferred← citeshttps://doi.org/10.1021/ci800310fopenalex-snapshot
Improving the Accuracy of an Affinity Prediction Method by Using Statistics on Shape Complementarity between Proteins
inferred← citeshttps://doi.org/10.1021/ct400295zopenalex-snapshot
Intermolecular Contact Potentials for Protein–Protein Interactions Extracted from Binding Free Energy Changes upon Mutation
inferred← citeshttps://doi.org/10.1021/ct400508sopenalex-snapshot
Protein–Protein Docking Using EMAP in CHARMM and Support Vector Machine: Application to Ab/Ag Complexes
inferred← citeshttps://doi.org/10.1021/ct700121nopenalex-snapshot
Coarse-Graining the Accessible Surface and the Electrostatics of Proteins for Protein−Protein Interactions
inferred← citeshttps://doi.org/10.1021/jm8001668openalex-snapshot
Identification and Validation of Human DNA Ligase Inhibitors Using Computer-Aided Drug Design
inferred← citeshttps://doi.org/10.1021/jp2120143openalex-snapshot
Combining Statistical Potentials with Dynamics-Based Entropies Improves Selection from Protein Decoys and Docking Poses
inferred← citeshttps://doi.org/10.1021/pr060368gopenalex-snapshot
Interaction Simulation of hERG K+ Channel with Its Specific BeKm-1 Peptide: Insights into the Selectivity of Molecular Recognition
inferred← citeshttps://doi.org/10.1021/pr9009854openalex-snapshot
Are Scoring Functions in Protein−Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark
inferred← citeshttps://doi.org/10.1038/nprot.2010.32openalex-snapshot
The HADDOCK web server for data-driven biomolecular docking
inferred← citeshttps://doi.org/10.1038/nprot.2016.169openalex-snapshot
The ClusPro web server for protein–protein docking
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