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The targets of CAPRI rounds 6–12
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/prot.10381openalex-snapshot
CAPRI: A Critical Assessment of PRedicted Interactions
inferredcites →https://doi.org/10.1002/prot.10393openalex-snapshot
Assessment of blind predictions of protein–protein interactions: Current status of docking methods
inferredcites →https://doi.org/10.1016/j.jmb.2003.12.073openalex-snapshot
A Dissection of Specific and Non-specific Protein–Protein Interfaces
inferredcites →https://doi.org/10.1016/j.jmb.2007.03.077openalex-snapshot
Structural Basis for the Bifunctionality of the U5 snRNP 52K Protein (CD2BP2)
inferredcites →https://doi.org/10.1016/j.molcel.2005.10.025openalex-snapshot
Molecular Basis for Bacterial Class I Release Factor Methylation by PrmC
inferredcites →https://doi.org/10.1016/j.sbi.2004.02.003openalex-snapshot
Prediction of protein–protein interactions: the CAPRI experiment, its evaluation and implications
inferredcites →https://doi.org/10.1016/j.str.2004.10.018openalex-snapshot
When Monomers Are Preferred: A Strategy for the Identification and Disruption of Weakly Oligomerized Proteins
inferredcites →https://doi.org/10.1016/s0065-3233(02)61001-0openalex-snapshot
Structural basis of macromolecular recognition
inferredcites →https://doi.org/10.1016/s0969-2126(03)00076-5openalex-snapshot
Design of Stable α-Helical Arrays from an Idealized TPR Motif
inferredcites →https://doi.org/10.1021/ja070153nopenalex-snapshot
Molecular Mimicry Enables Competitive Recruitment by a Natively Disordered Protein
inferredcites →https://doi.org/10.1038/nature01873openalex-snapshot
Complex between nidogen and laminin fragments reveals a paradigmatic β-propeller interface
inferredcites →https://doi.org/10.1038/nature02582openalex-snapshot
Structural basis of protein phosphatase 1 regulation
inferredcites →https://doi.org/10.1038/nature04510openalex-snapshot
How guanylate-binding proteins achieve assembly-stimulated processive cleavage of GTP to GMP
inferredcites →https://doi.org/10.1038/sj.emboj.7600064openalex-snapshot
Structure of a flavivirus envelope glycoprotein in its low‐pH‐induced membrane fusion conformation
inferredcites →https://doi.org/10.1038/sj.emboj.7600162openalex-snapshot
Structural inhibition of the colicin D tRNase by the tRNA‐mimicking immunity protein
inferredcites →https://doi.org/10.1038/sj.emboj.7601634openalex-snapshot
Structural basis for ARF1‐mediated recruitment of ARHGAP21 to Golgi membranes
inferredcites →https://doi.org/10.1073/pnas.0400014101openalex-snapshot
Insight into the PrP C → PrP Sc conversion from the structures of antibody-bound ovine prion scrapie-susceptibility variants
inferredcites →https://doi.org/10.1073/pnas.0503525102openalex-snapshot
Structural basis of the Sir1–origin recognition complex interaction in transcriptional silencing
inferredcites →https://doi.org/10.1073/pnas.0611173104openalex-snapshot
Evidence for a dual binding mode of dockerin modules to cohesins
inferredcites →https://doi.org/10.1073/pnas.1936124100openalex-snapshot
Cellulosome assembly revealed by the crystal structure of the cohesin–dockerin complex
inferredcites →https://doi.org/10.1074/jbc.m404212200openalex-snapshot
Structural Basis for Inhibition of Aspergillus niger Xylanase by Triticum aestivum Xylanase Inhibitor-I
inferredcites →https://doi.org/10.1074/jbc.m414642200openalex-snapshot
Activation of the LicT Transcriptional Antiterminator Involves a Domain Swing/Lock Mechanism Provoking Massive Structural Changes
inferredcites →https://doi.org/10.1107/s090744490603575xopenalex-snapshot
Macromolecular recognition in the Protein Data Bank
inferredcites →https://doi.org/10.1242/jcs.02369openalex-snapshot
Centaurin-α1 interacts directly with kinesin motor protein KIF13B
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/jcc.21276openalex-snapshot
Protein–protein docking dealing with the unknown
inferred← citeshttps://doi.org/10.1002/prot.20551openalex-snapshot
Assessment of CAPRI predictions in rounds 3–5 shows progress in docking procedures
inferred← citeshttps://doi.org/10.1002/prot.20842openalex-snapshot
WHISCY: What information does surface conservation yield? Application to data‐driven docking
inferred← citeshttps://doi.org/10.1002/prot.21804openalex-snapshot
Docking and scoring protein complexes: CAPRI 3rd Edition
inferred← citeshttps://doi.org/10.1002/prot.22436openalex-snapshot
Combining interface core and whole interface descriptors in postscan processing of protein‐protein docking models
inferred← citeshttps://doi.org/10.1002/prot.22765openalex-snapshot
A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13–19
inferred← citeshttps://doi.org/10.1002/prot.22790openalex-snapshot
An integrated suite of fast docking algorithms
inferred← citeshttps://doi.org/10.1002/prot.22845openalex-snapshot
Determining macromolecular assembly structures by molecular docking and fitting into an electron density map
inferred← citeshttps://doi.org/10.1002/prot.23082openalex-snapshot
SymmRef: A flexible refinement method for symmetric multimers
inferred← citeshttps://doi.org/10.1002/prot.24075openalex-snapshot
A protein‐RNA docking benchmark (II): Extended set from experimental and homology modeling data
inferred← citeshttps://doi.org/10.1002/prot.24423openalex-snapshot
Using a consensus approach based on the conservation of inter‐residue contacts to rank CAPRI models
inferred← citeshttps://doi.org/10.1002/prot.25212openalex-snapshot
Predicting protein conformational changes for unbound and homology docking: learning from intrinsic and induced flexibility
inferred← citeshttps://doi.org/10.1007/978-0-387-35966-3_7openalex-snapshot
Elucidation of Protein–Protein and Protein–Ligand Interactions by NMR Spectroscopy
inferred← citeshttps://doi.org/10.1007/978-1-4939-3572-7_5openalex-snapshot
Classification and Exploration of 3D Protein Domain Interactions Using Kbdock
inferred← citeshttps://doi.org/10.1007/978-1-60327-241-4_20openalex-snapshot
Analysis and Prediction of Protein Quaternary Structure
inferred← citeshttps://doi.org/10.1007/978-94-007-5285-6_6openalex-snapshot
Prediction of Protein-Protein Binding Interfaces
inferred← citeshttps://doi.org/10.1007/s00894-007-0191-xopenalex-snapshot
Localization of ligand binding site in proteins identified in silico
inferred← citeshttps://doi.org/10.1007/s00894-010-0758-9openalex-snapshot
dockYard–a repository to assist modeling of protein-protein docking
inferred← citeshttps://doi.org/10.1007/s00894-011-1157-6openalex-snapshot
Application of information theory to feature selection in protein docking
inferred← citeshttps://doi.org/10.1016/j.bbapap.2006.08.002openalex-snapshot
Predicting 3D structures of transient protein–protein complexes by homology
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2007.03.010openalex-snapshot
Simulation of conformational changes occurring when a protein interacts with its receptor
inferred← citeshttps://doi.org/10.1016/j.febslet.2006.08.037openalex-snapshot
Normal mode analysis as a prerequisite for drug design: Application to matrix metalloproteinases inhibitors
inferred← citeshttps://doi.org/10.1016/j.jmb.2007.07.050openalex-snapshot
Protein–Protein Docking with Backbone Flexibility
inferred← citeshttps://doi.org/10.1016/j.jsb.2010.09.023openalex-snapshot
Macromolecular docking restrained by a small angle X-ray scattering profile
inferred← citeshttps://doi.org/10.1016/j.sbi.2017.10.006openalex-snapshot
The computational prediction of protein assemblies
inferred← citeshttps://doi.org/10.1016/j.str.2011.04.006openalex-snapshot
Protein-Protein Complex Structure Predictions by Multimeric Threading and Template Recombination
inferred← citeshttps://doi.org/10.1016/j.str.2018.10.001openalex-snapshot
Sampling Native-like Structures of RNA-Protein Complexes through Rosetta Folding and Docking
inferred← citeshttps://doi.org/10.1016/j.ymeth.2016.11.001openalex-snapshot
Structural and energy determinants in protein-RNA docking
inferred← citeshttps://doi.org/10.1016/s1872-1508(06)60023-5openalex-snapshot
Scoring Function for the Other-type Protein Complexe
inferred← citeshttps://doi.org/10.1039/c005060copenalex-snapshot
Protein–protein docking tested in blind predictions: the CAPRI experiment
inferred← citeshttps://doi.org/10.1074/jbc.m110.197053openalex-snapshot
Structural Basis of Rnd1 Binding to Plexin Rho GTPase Binding Domains (RBDs)
inferred← citeshttps://doi.org/10.1093/nar/gkl768openalex-snapshot
PROTCOM: searchable database of protein complexes enhanced with domain-domain structures
inferred← citeshttps://doi.org/10.1093/nar/gks535openalex-snapshot
PRince: a web server for structural and physicochemical analysis of Protein-RNA interface
inferred← citeshttps://doi.org/10.1107/s090744490603575xopenalex-snapshot
Macromolecular recognition in the Protein Data Bank
inferred← citeshttps://doi.org/10.1110/ps.051960406openalex-snapshot
Exploring protein interfaces with a general photochemical reagent
inferred← citeshttps://doi.org/10.1186/1471-2105-13-228openalex-snapshot
Protein-DNA docking with a coarse-grained force field
inferred← citeshttps://doi.org/10.13021/mars/6871openalex-snapshot
Application of a Topological Descriptor for Protein Interface Identification and Protein Binding Prediction
inferred← citeshttps://doi.org/10.1371/journal.pcbi.0020153openalex-snapshot
Structural Modeling of Protein Interactions by Analogy: Application to PSD-95
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1000644openalex-snapshot
SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models
inferred← citeshttps://doi.org/10.1371/journal.pone.0074443openalex-snapshot
Optimizing Scoring Function of Protein-Nucleic Acid Interactions with Both Affinity and Specificity
inferred← citeshttps://doi.org/10.1385/1-59259-762-9:003openalex-snapshot
Structural Basis of Protein–Protein Interactions
inferred← citeshttps://doi.org/10.1504/ijbra.2007.013605openalex-snapshot
Is the protein folding an aim-oriented process? Human haemoglobin as example
inferred← citeshttps://doi.org/10.1533/9781908818256.95openalex-snapshot
Use of the “fuzzy oil drop” model to identify the complexation area in protein homodimers
inferred← citeshttps://doi.org/10.3389/fmolb.2021.647915openalex-snapshot
Protein Docking Model Evaluation by Graph Neural Networks
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