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The natural way forward: Molecular dynamics simulation analysis of phytochemicals from Indian medicinal plants as potential inhibitors of SARS‐CoV ‐2 targets

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Outgoing claims: the papers this work cites, builds on, or argues with.

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The potential chemical structure of anti‐SARS‐CoV‐2 RNA‐dependent RNA polymerase
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Essential dynamics of proteins
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The natural way forward: Molecular dynamics simulation analysis of phytochemicals from Indian medicinal plants as potential inhibitors of SARS‐CoV ‐2 targets
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Fluctuation and Cross-correlation Analysis of Protein Motions Observed in Nanosecond Molecular Dynamics Simulations
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Baricitinib as potential treatment for 2019-nCoV acute respiratory disease
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Protein dynamics simulations from nanoseconds to microseconds
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Prediction of Deleterious Non-synonymous SNPs of Human STK11 Gene by Combining Algorithms, Molecular Docking, and Molecular Dynamics Simulation
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Baicalin, a metabolite of baicalein with antiviral activity against dengue virus
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A Novel Coronavirus from Patients with Pneumonia in China, 2019
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Clinical Characteristics of Coronavirus Disease 2019 in China
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Electrostatics of nanosystems: Application to microtubules and the ribosome
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The crystal structures of severe acute respiratory syndrome virus main protease and its complex with an inhibitor
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Severe Acute Respiratory Syndrome-associated Coronavirus Nucleocapsid Protein Interacts with Smad3 and Modulates Transforming Growth Factor-β Signaling
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Potential inhibitors of coronavirus 3-chymotrypsin-like protease (3CLpro): anin silicoscreening of alkaloids and terpenoids from African medicinal plants
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Withanone and caffeic acid phenethyl ester are predicted to interact with main protease (M pro ) of SARS-CoV-2 and inhibit its activity
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In-silico investigation of phytochemicals from Asparagus racemosus as plausible antiviral agent in COVID-19
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Structure-based identification of potential SARS-CoV-2 main protease inhibitors
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Potent binding of 2019 novel coronavirus spike protein by a SARS coronavirus-specific human monoclonal antibody
inferredcites →https://doi.org/10.1088/0034-4885/47/1/001openalex-snapshot
Protein dynamics
inferredcites →https://doi.org/10.1093/bioinformatics/btl461openalex-snapshot
Bio3d: an R package for the comparative analysis of protein structures
inferredcites →https://doi.org/10.1093/nar/gkn739openalex-snapshot
VirusMINT: a viral protein interaction database
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SwissTargetPrediction: a web server for target prediction of bioactive small molecules
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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1109/tcbb.2021.3075299openalex-snapshot
Network-Based Analysis of Fatal Comorbidities of COVID-19 and Potential Therapeutics
inferredcites →https://doi.org/10.1126/science.1085658openalex-snapshot
Coronavirus Main Proteinase (3CL pro ) Structure: Basis for Design of Anti-SARS Drugs
inferredcites →https://doi.org/10.1126/science.1116480openalex-snapshot
Structure of SARS Coronavirus Spike Receptor-Binding Domain Complexed with Receptor
inferredcites →https://doi.org/10.1126/science.abb3405openalex-snapshot
Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved α-ketoamide inhibitors
inferredcites →https://doi.org/10.1186/1756-0500-5-367openalex-snapshot
ACPYPE - AnteChamber PYthon Parser interfacE
inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
inferredcites →https://doi.org/10.1371/journal.ppat.1008392openalex-snapshot
Structure of mouse coronavirus spike protein complexed with receptor reveals mechanism for viral entry
inferredcites →https://doi.org/10.20944/preprints202003.0226.v1openalex-snapshot
Potential Inhibitor of COVID-19 Main Protease (Mpro) From Several Medicinal Plant Compounds by Molecular Docking Study
inferredcites →https://doi.org/10.20944/preprints202003.0247.v1openalex-snapshot
Prediction of Potential 3CLpro-Targeting Anti-SARS-CoV-2 Compounds from Chinese Medicine
inferredcites →https://doi.org/10.20944/preprints202003.0333.v1openalex-snapshot
Identification of Potent COVID-19 Main Protease (Mpro) Inhibitors from Natural Polyphenols: An in Silico Strategy Unveils a Hope against CORONA
inferredcites →https://doi.org/10.20944/preprints202003.0349.v1openalex-snapshot
In Silico Identification of Potent COVID-19 Main Protease Inhibitors from FDA Approved Antiviral Compounds and Active Phytochemicals through Molecular Docking: A Drug Repurposing Approach
inferredcites →https://doi.org/10.20944/preprints202003.0455.v1openalex-snapshot
Eucalyptol (1,8 cineole) from Eucalyptus Essential Oil a Potential Inhibitor of COVID 19 Corona Virus Infection by Molecular Docking Studies
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Theoretical Molecular Docking Study of the Structural Disruption of the Viral 3CL-Protease of COVID19 Induced by Binding of Capsaicin, Piperine and Curcumin Part 1: A Comparative Study with Chloroquine and Hydrochloroquine Two Antimalaric Drugs
inferredcites →https://doi.org/10.2174/138945011793591626openalex-snapshot
Complex Interactions between Phytochemicals. The Multi-Target Therapeutic Concept of Phytotherapy
inferredcites →https://doi.org/10.2174/157016409789973734openalex-snapshot
Computational Analysis of Amino Acid Mutation: A Proteome Wide Perspective
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Recent Advances in Protein−Ligand Interactions: Molecular Dynamics Simulations and Binding Free Energy
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Coronavirus Main Proteinase (3CLpro) Structure: Basis for Design of anti-SARS Drugs
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Multivariate Calibration.
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Nature to Nurture- Identifying Phytochemicals from Indian Medicinal Plants as Prophylactic Medicine by Rational Screening to Be Potent Against Multiple Drug Targets of SARS-CoV-2
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Nature to Nurture- Identifying Phytochemicals from Indian Medicinal Plants as Prophylactic Medicine by Rational Screening to Be Potent Against Multiple Drug Targets of SARS-CoV-2
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Putative Inhibitors of SARS-CoV-2 Main Protease from A Library of Marine Natural Products: A Virtual Screening and Molecular Modeling Study
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Antiviral Efficacy of Flavonoids against Enterovirus 71 Infection in Vitro and in Newborn Mice
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Role of advanced glycation end products in cardiovascular disease
inferredcites →https://doi.org/10.5281/zenodo.3562494openalex-snapshot
GROMACS 2020 Source code

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.2142/biophysico.bppb-v21.0007openalex-snapshot
Molecular dynamics simulation analysis of structural dynamic cross correlation induced by odorant hydrogen-bonding in mouse eugenol ol- factory receptor
inferred← citeshttps://doi.org/10.2174/0115734099297360240312043642openalex-snapshot
Repurposing of Compounds from Streptomyces spp. as Potential Inhibitors of Aminoacyltransferase FemA: An Essential Drug Target against Antibiotic-resistant Staphylococcus aureus
inferred← citeshttps://doi.org/10.2174/1386207325666220629161828openalex-snapshot
An Overview on Immunity Booster Foods in Coronavirus Disease (COVID-19)
inferred← citeshttps://doi.org/10.2174/1570178619666220309160557openalex-snapshot
A Comprehensive Review on In Silico-predicted Potential Phytochemicals against SARS-CoV-2: Food for Thought for Researchers
inferred← citeshttps://doi.org/10.2174/1570180818666210804141613openalex-snapshot
Sequence Analysis, Structure Prediction of Receptor Proteins and In Silico Study of Potential Inhibitors for Management of Life Threatening COVID-19
inferred← citeshttps://doi.org/10.21926/obm.genet.2303186openalex-snapshot
An Evidence of Drug Repurposing for COVID-19 Pandemic Based on In silico Investigation from Phenolic Derivatives of Silybum Marianum Against SARS-Cov-2 Proteins
inferred← citeshttps://doi.org/10.26434/chemrxiv.12661214openalex-snapshot
Natures Therapy for COVID-19: Targeting the Vital Non-Structural Proteins (NSP) from SARS-CoV-2 with Phytochemicals from Indian Medicinal Plants
inferred← citeshttps://doi.org/10.26434/chemrxiv.12661214.v1openalex-snapshot
Natures Therapy for COVID-19: Targeting the Vital Non-Structural Proteins (NSP) from SARS-CoV-2 with Phytochemicals from Indian Medicinal Plants
inferred← citeshttps://doi.org/10.26434/chemrxiv.14499306openalex-snapshot
Free Energy Landscapes and Residue Network Analysis for Six SARS-CoV-2 Targets in Complex with Plausible Phytochemical Inhibitors from Withania Somnifera: 1 µS Molecular Dynamics Simulations
inferred← citeshttps://doi.org/10.26434/chemrxiv.14499306.v1openalex-snapshot
Free Energy Landscapes and Residue Network Analysis for Six SARS-CoV-2 Targets in Complex with Plausible Phytochemical Inhibitors from Withania Somnifera: 1 µS Molecular Dynamics Simulations
inferred← citeshttps://doi.org/10.2991/978-94-6463-020-6_7openalex-snapshot
Phytochemicals as Potential Drug Candidates for SARS Cov-2: An RDRp Based In-Silico Drug Designing
inferred← citeshttps://doi.org/10.3389/fbinf.2024.1482338openalex-snapshot
Identification of novel drug targets for Helicobacter pylori: structure-based virtual screening of potential inhibitors against DAH7PS protein involved in the shikimate pathway
inferred← citeshttps://doi.org/10.3389/fonc.2024.1360745openalex-snapshot
In silico evaluation of anti-colorectal cancer inhibitors by Resveratrol derivatives targeting Armadillo repeats domain of APC: molecular docking and molecular dynamics simulation
inferred← citeshttps://doi.org/10.3389/fphar.2020.621099openalex-snapshot
Targeting Neurological Manifestations of Coronaviruses by Candidate Phytochemicals: A Mechanistic Approach
inferred← citeshttps://doi.org/10.3389/fphar.2021.623795openalex-snapshot
Withania somnifera (L.) Dunal: Opportunity for Clinical Repurposing in COVID-19 Management
inferred← citeshttps://doi.org/10.3389/fphar.2022.891535openalex-snapshot
The Antimicrobial Potential of the Neem Tree Azadirachta indica
inferred← citeshttps://doi.org/10.3390/ijms26125835openalex-snapshot
Allosteric Coupling in Full-Length Lyn Kinase Revealed by Molecular Dynamics and Network Analysis
inferred← citeshttps://doi.org/10.3390/microorganisms11041000openalex-snapshot
Phytochemicals of Withania somnifera as a Future Promising Drug against SARS-CoV-2: Pharmacological Role, Molecular Mechanism, Molecular Docking Evaluation, and Efficient Delivery
inferred← citeshttps://doi.org/10.3390/molecules28124860openalex-snapshot
A Comprehensive Update of Various Attempts by Medicinal Chemists to Combat COVID-19 through Natural Products
inferred← citeshttps://doi.org/10.3390/molecules30071412openalex-snapshot
The Dynamical Asymmetry in SARS-CoV2 Protease Reveals the Exchange Between Catalytic Activity and Stability in Homodimers
inferred← citeshttps://doi.org/10.3390/ph19050730openalex-snapshot
Visceral Leishmaniasis: Integrated In Silico Screening of Djiboutian Medicinal Plant Phytoconstituents Targeting Leishmania donovani and Leishmania infantum
inferred← citeshttps://doi.org/10.53552/ijmfmap.9.2.2023.12-24openalex-snapshot
Azadirachta indica –Neem-A natural gift for prevention and treatment of chronic diseases- A review
inferred← citeshttps://doi.org/10.7324/japs.2021.110402openalex-snapshot
Medicinal and therapeutic potential of withanolides from Withania somnifera against COVID-19
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