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Evaluation of acquisition modes for semi‐quantitative analysis by targeted and untargeted mass spectrometry

https://doi.org/10.1002/rcm.9308
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Outgoing claims: the papers this work cites, builds on, or argues with.

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An Introduction to Quadrupole Ion Trap Mass Spectrometry
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Biochemical applications of mass spectrometry in pharmaceutical drug discovery
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Comparison of data‐acquisition methods for the identification and quantification of histone post‐translational modifications on a Q Exactive HF hybrid quadrupole Orbitrap mass spectrometer
inferredcites →https://doi.org/10.1002/rcm.9308openalex-snapshot
Evaluation of acquisition modes for semi‐quantitative analysis by targeted and untargeted mass spectrometry
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Quantitative Mass Spectrometry-Based Proteomics: An Overview
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Mass Spectrometry in Clinical Laboratory: Applications in Biomolecular Analysis
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Quantification of Proteins and Metabolites by Mass Spectrometry Without Isotopic Labeling
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Quantitative Mass Spectrometry-Based Proteomics: An Overview
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Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present
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Isotopic labeling-assisted metabolomics using LC–MS
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Development of a rapid profiling method for the analysis of polar analytes in urine using HILIC–MS and ion mobility enabled HILIC–MS
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Design and Application of a Data-Independent Precursor and Product Ion Repository
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On the Reproducibility of Label-Free Quantitative Cross-Linking/Mass Spectrometry
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Design and Statistical Analysis of Mass-Spectrometry-Based Quantitative Proteomics Data
inferredcites →https://doi.org/10.1016/j.cbpa.2017.10.026openalex-snapshot
The application of ion-mobility mass spectrometry for structure/function investigation of protein complexes
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Quantification of more than 150 micropollutants including transformation products in aqueous samples by liquid chromatography-tandem mass spectrometry using scheduled multiple reaction monitoring
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An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies
inferredcites →https://doi.org/10.1016/j.jchromb.2008.10.024openalex-snapshot
The use of proteome similarity for the qualitative and quantitative profiling of reperfused myocardium☆
inferredcites →https://doi.org/10.1016/j.str.2019.10.018openalex-snapshot
Quantitative Structural Interpretation of Protein Crosslinks
inferredcites →https://doi.org/10.1016/j.tibs.2018.09.003openalex-snapshot
Protein Dynamics in Solution by Quantitative Crosslinking/Mass Spectrometry
inferredcites →https://doi.org/10.1016/s0021-9673(97)00422-6openalex-snapshot
Microcolumn liquid chromatography: instrumentation, detection and applications
inferredcites →https://doi.org/10.1016/s1044-0305(99)00079-3openalex-snapshot
A database of 660 peptide ion cross sections: Use of intrinsic size parameters for bona fide predictions of cross sections
inferredcites →https://doi.org/10.1016/s1387-3806(01)00511-5openalex-snapshot
Multidimensional separations of complex peptide mixtures: a combined high-performance liquid chromatography/ion mobility/time-of-flight mass spectrometry approach
inferredcites →https://doi.org/10.1021/ac026468xopenalex-snapshot
Quantification of Proteins and Metabolites by Mass Spectrometry without Isotopic Labeling or Spiked Standards
inferredcites →https://doi.org/10.1021/ac801916hopenalex-snapshot
Characterization of Phosphorylated Peptides Using Traveling Wave-Based and Drift Cell Ion Mobility Mass Spectrometry
inferredcites →https://doi.org/10.1021/acs.analchem.0c01273openalex-snapshot
Expanding the Depth and Sensitivity of Cross-Link Identification by Differential Ion Mobility Using High-Field Asymmetric Waveform Ion Mobility Spectrometry
inferredcites →https://doi.org/10.1021/acs.analchem.1c01317openalex-snapshot
Cross-Linking/Mass Spectrometry Combined with Ion Mobility on a timsTOF Pro Instrument for Structural Proteomics
inferredcites →https://doi.org/10.1021/acs.analchem.7b01234openalex-snapshot
Structural Dynamics of Native-Like Ions in the Gas Phase: Results from Tandem Ion Mobility of Cytochrome c
inferredcites →https://doi.org/10.1021/acs.analchem.8b02319openalex-snapshot
Optimization Workflow for the Analysis of Cross-Linked Peptides Using a Quadrupole Time-of-Flight Mass Spectrometer
inferredcites →https://doi.org/10.1021/acs.analchem.9b00658openalex-snapshot
First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study
inferredcites →https://doi.org/10.1021/acs.jproteome.0c00821openalex-snapshot
High-Throughput Microbore Ultrahigh-Performance Liquid Chromatography-Ion Mobility-Enabled-Mass Spectrometry-Based Proteomics Methodology for the Exploratory Analysis of Serum Samples from Large Cohort Studies
inferredcites →https://doi.org/10.1021/acs.jproteome.6b00645openalex-snapshot
Assessment of Label-Free Quantification in Discovery Proteomics and Impact of Technological Factors and Natural Variability of Protein Abundance
inferredcites →https://doi.org/10.1038/nchem.1889openalex-snapshot
The power of ion mobility-mass spectrometry for structural characterization and the study of conformational dynamics
inferredcites →https://doi.org/10.1038/nprot.2006.22openalex-snapshot
Quantitative proteome analysis using isotope-coded affinity tags and mass spectrometry
inferredcites →https://doi.org/10.1038/nprot.2008.2openalex-snapshot
Quantitative proteomics using stable isotope labeling with amino acids in cell culture
inferredcites →https://doi.org/10.1038/nprot.2008.78openalex-snapshot
Ion mobility–mass spectrometry analysis of large protein complexes
inferredcites →https://doi.org/10.1038/nprot.2010.50openalex-snapshot
Global metabolic profiling procedures for urine using UPLC–MS
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The basics of mass spectrometry in the twenty-first century
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Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics
inferredcites →https://doi.org/10.1074/mcp.ra120.002094openalex-snapshot
Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry
inferredcites →https://doi.org/10.1074/mcp.tir118.001276openalex-snapshot
Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry
inferredcites →https://doi.org/10.1093/bioinformatics/btq054openalex-snapshot
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
inferredcites →https://doi.org/10.1098/rsta.2015.0366openalex-snapshot
Quantitative mass spectrometry methods for pharmaceutical analysis
inferredcites →https://doi.org/10.1098/rsta.2015.0382openalex-snapshot
Quantitative mass spectrometry: an overview
inferredcites →https://doi.org/10.1101/424697openalex-snapshot
Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines
inferredcites →https://doi.org/10.1186/s12953-018-0144-6openalex-snapshot
Label-free quantitative mass spectrometry analysis of differential protein expression in the developing cochlear sensory epithelium
inferredcites →https://doi.org/10.12688/f1000research.7042.1openalex-snapshot
Technical advances in proteomics: new developments in data-independent acquisition
inferredcites →https://doi.org/10.1371/journal.pone.0167547openalex-snapshot
A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry
inferredcites →https://doi.org/10.1385/1-59745-275-0:209openalex-snapshot
Quantitative Proteomics by Stable Isotope Labeling and Mass Spectrometry

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