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hnRNP-K Targets Open Chromatin in Mouse Embryonic Stem Cells in Concert with Multiple Regulators

https://doi.org/10.1002/stem.3025
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1097-4644(20001201)79:3<395::aid-jcb50>3.0.co;2-mopenalex-snapshot
Heterogeneous nuclear ribonucleoproteins as regulators of gene expression through interactions with the human thymidine kinase promoter
inferredcites →https://doi.org/10.1002/bies.20048openalex-snapshot
hnRNP K: One protein multiple processes
inferredcites →https://doi.org/10.1002/dvg.20313openalex-snapshot
Lentivirus as a tool for lineage‐specific gene manipulations
inferredcites →https://doi.org/10.1002/dvg.22903openalex-snapshot
Comprehensive interactome of Otx2 in the adult mouse neural retina
inferredcites →https://doi.org/10.1002/ijc.30701openalex-snapshot
Down‐regulation of DAB2IP promotes colorectal cancer invasion and metastasis by translocating hnRNPK into nucleus to enhance the transcription of MMP2
inferredcites →https://doi.org/10.1002/j.1460-2075.1989.tb08393.xopenalex-snapshot
Octamer binding proteins confer transcriptional activity in early mouse embryogenesis.
inferredcites →https://doi.org/10.1002/j.1460-2075.1996.tb00423.xopenalex-snapshot
Retinoic acid‐mediated down‐regulation of Oct3/4 coincides with the loss of promoter occupancy in vivo.
inferredcites →https://doi.org/10.1007/s003350010279openalex-snapshot
Comparative analysis of human, bovine, and murine Oct-4 upstream promoter sequences
inferredcites →https://doi.org/10.1016/j.bbadis.2016.02.006openalex-snapshot
Notch-dependent EMT is attenuated in patients with aortic aneurysm and bicuspid aortic valve
inferredcites →https://doi.org/10.1016/j.bbrc.2009.01.136openalex-snapshot
Poly(C)-binding proteins as transcriptional regulators of gene expression
inferredcites →https://doi.org/10.1016/j.ccell.2015.09.001openalex-snapshot
hnRNP K Is a Haploinsufficient Tumor Suppressor that Regulates Proliferation and Differentiation Programs in Hematologic Malignancies
inferredcites →https://doi.org/10.1016/j.cell.2011.01.032openalex-snapshot
Control of the Embryonic Stem Cell State
inferredcites →https://doi.org/10.1016/j.cell.2011.05.017openalex-snapshot
Pluripotency Factors in Embryonic Stem Cells Regulate Differentiation into Germ Layers
inferredcites →https://doi.org/10.1016/j.cell.2013.03.035openalex-snapshot
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
inferredcites →https://doi.org/10.1016/j.celrep.2016.08.015openalex-snapshot
MYU, a Target lncRNA for Wnt/c-Myc Signaling, Mediates Induction of CDK6 to Promote Cell Cycle Progression
inferredcites →https://doi.org/10.1016/j.devcel.2014.03.004openalex-snapshot
Rif1 Maintains Telomere Length Homeostasis of ESCs by Mediating Heterochromatin Silencing
inferredcites →https://doi.org/10.1016/j.molcel.2010.05.004openalex-snapshot
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
inferredcites →https://doi.org/10.1016/j.molcel.2014.01.021openalex-snapshot
An Evolutionarily Conserved Long Noncoding RNA TUNA Controls Pluripotency and Neural Lineage Commitment
inferredcites →https://doi.org/10.1016/j.stemcr.2016.09.012openalex-snapshot
Distinct Enhancer Activity of Oct4 in Naive and Primed Mouse Pluripotency
inferredcites →https://doi.org/10.1016/j.str.2005.04.008openalex-snapshot
X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids
inferredcites →https://doi.org/10.1016/s0006-8993(00)02389-1openalex-snapshot
Similar poly(C)-sensitive RNA-binding complexes regulate the stability of the heavy and light neurofilament mRNAs
inferredcites →https://doi.org/10.1016/s0925-4773(02)00087-4openalex-snapshot
Allele-specific expression of imprinted genes in mouse migratory primordial germ cells
inferredcites →https://doi.org/10.1017/s1355838202024627openalex-snapshot
The poly(C)-binding proteins: A multiplicity of functions and a search for mechanisms
inferredcites →https://doi.org/10.1021/bi101633bopenalex-snapshot
Heterogeneous Nuclear Ribonucleoprotein K and Nucleolin as Transcriptional Activators of the Vascular Endothelial Growth Factor Promoter through Interaction with Secondary DNA Structures
inferredcites →https://doi.org/10.1038/292154a0openalex-snapshot
Establishment in culture of pluripotential cells from mouse embryos
inferredcites →https://doi.org/10.1038/cdd.2010.24openalex-snapshot
The antiapoptotic protein, FLIP, is regulated by heterogeneous nuclear ribonucleoprotein K and correlates with poor overall survival of nasopharyngeal carcinoma patients
inferredcites →https://doi.org/10.1038/cdd.2017.106openalex-snapshot
Regulation of PLK1 through competition between hnRNPK, miR-149-3p and miR-193b-5p
inferredcites →https://doi.org/10.1038/cddis.2014.551openalex-snapshot
A tight control of Rif1 by Oct4 and Smad3 is critical for mouse embryonic stem cell stability
inferredcites →https://doi.org/10.1038/cr.2014.165openalex-snapshot
The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters
inferredcites →https://doi.org/10.1038/nature09531openalex-snapshot
A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity
inferredcites →https://doi.org/10.1038/nature16505openalex-snapshot
Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells
inferredcites →https://doi.org/10.1038/nbt.1630openalex-snapshot
GREAT improves functional interpretation of cis-regulatory regions
inferredcites →https://doi.org/10.1038/ncb1481openalex-snapshot
Sall4 modulates embryonic stem cell pluripotency and early embryonic development by the transcriptional regulation of Pou5f1
inferredcites →https://doi.org/10.1038/ncomms11063openalex-snapshot
Essential role of the TFIID subunit TAF4 in murine embryogenesis and embryonic stem cell differentiation
inferredcites →https://doi.org/10.1038/ncomms6769openalex-snapshot
Regulation of tyrosine hydroxylase transcription by hnRNP K and DNA secondary structure
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.2089openalex-snapshot
NIH Image to ImageJ: 25 years of image analysis
inferredcites →https://doi.org/10.1038/nprot.2006.468openalex-snapshot
In-gel digestion for mass spectrometric characterization of proteins and proteomes
inferredcites →https://doi.org/10.1038/nprot.2013.143openalex-snapshot
Genome engineering using the CRISPR-Cas9 system
inferredcites →https://doi.org/10.1038/s41467-017-01076-4openalex-snapshot
Dynamics of lineage commitment revealed by single-cell transcriptomics of differentiating embryonic stem cells
inferredcites →https://doi.org/10.1074/jbc.271.44.27701openalex-snapshot
Zik1, a Transcriptional Repressor That Interacts with the Heterogeneous Nuclear Ribonucleoprotein Particle K Protein
inferredcites →https://doi.org/10.1074/jbc.273.31.19877openalex-snapshot
Differential Effects of Heterogeneous Nuclear Ribonucleoprotein K on Sp1- and Sp3-mediated Transcriptional Activation of a Neuronal Nicotinic Acetylcholine Receptor Promoter
inferredcites →https://doi.org/10.1074/jbc.275.20.15498openalex-snapshot
Interaction of Two Multifunctional Proteins
inferredcites →https://doi.org/10.1074/jbc.275.9.6608openalex-snapshot
Synergy of SF1 and RAR in Activation of Oct-3/4Promoter
inferredcites →https://doi.org/10.1074/jbc.m010594200openalex-snapshot
Optimized RNA Targets of Two Closely Related Triple KH Domain Proteins, Heterogeneous Nuclear Ribonucleoprotein K and αCP-2KL, Suggest Distinct Modes of RNA Recognition
inferredcites →https://doi.org/10.1074/jbc.m110267200openalex-snapshot
Heterogeneous Nuclear Ribonucleoprotein K Protein Associates with Multiple Mitochondrial Transcripts within the Organelle
inferredcites →https://doi.org/10.1074/jbc.m410015200openalex-snapshot
Oct-3/4 and Sox2 Regulate Oct-3/4 Gene in Embryonic Stem Cells
inferredcites →https://doi.org/10.1089/dna.2017.3780openalex-snapshot
Networks of Transcription Factors for Oct4 Expression in Mice
inferredcites →https://doi.org/10.1089/scd.2007.0084openalex-snapshot
Promoter-Dependent EGFP Expression during Embryonic Stem Cell Propagation and Differentiation
inferredcites →https://doi.org/10.1093/nar/gkg246openalex-snapshot
Identification of the SRC pyrimidine-binding protein (SPy) as hnRNP K: implications in the regulation of SRC1A transcription
inferredcites →https://doi.org/10.1093/nar/gkg452openalex-snapshot
Transient recruitment of the hnRNP K protein to inducibly transcribed gene loci
inferredcites →https://doi.org/10.1093/nar/gkp335openalex-snapshot
MEME SUITE: tools for motif discovery and searching
inferredcites →https://doi.org/10.1093/nar/gkw343openalex-snapshot
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
inferredcites →https://doi.org/10.1101/gad.5.9.1513openalex-snapshot
Promoter traps in embryonic stem cells: a genetic screen to identify and mutate developmental genes in mice.
inferredcites →https://doi.org/10.1111/jcmm.12999openalex-snapshot
Heterogeneous nuclear ribonucleoprotein K is associated with poor prognosis and regulates proliferation and apoptosis in bladder cancer
inferredcites →https://doi.org/10.1128/jvi.77.16.8957-8951.2003openalex-snapshot
Conditional Suppression of Cellular Genes: Lentivirus Vector-Mediated Drug-Inducible RNA Interference
inferredcites →https://doi.org/10.1128/mcb.14.7.4509openalex-snapshot
Identification of Src, Fyn, and Lyn SH3-Binding Proteins: Implications for a Function of SH3 Domains
inferredcites →https://doi.org/10.1128/mcb.15.3.1769openalex-snapshot
Detection and Characterization of a 3′ Untranslated Region Ribonucleoprotein Complex Associated with Human α-Globin mRNA Stability
inferredcites →https://doi.org/10.1128/mcb.15.5.2457openalex-snapshot
Erythroid Cell-Specific mRNA Stability Elements in the α2-Globin 39 Nontranslated Region
inferredcites →https://doi.org/10.1128/mcb.16.5.2350openalex-snapshot
Heterogeneous Nuclear Ribonucleoprotein K Is a Transcription Factor
inferredcites →https://doi.org/10.1128/mcb.17.8.4707openalex-snapshot
The Product of the Murine Homolog of the Drosophila extra sex combs Gene Displays Transcriptional Repressor Activity
inferredcites →https://doi.org/10.1128/mcb.21.17.5879-5888.2001openalex-snapshot
Structural and Functional Analysis of an mRNP Complex That Mediates the High Stability of Human β-Globin mRNA
inferredcites →https://doi.org/10.1128/mcb.23.11.3774-3787.2003openalex-snapshot
Regulation of BRCA1 Transcription by Specific Single-Stranded DNA Binding Factors
inferredcites →https://doi.org/10.1128/mcb.25.15.6436-6453.2005openalex-snapshot
hnRNP K Binds a Core Polypyrimidine Element in the Eukaryotic Translation Initiation Factor 4E (eIF4E) Promoter, and Its Regulation of eIF4E Contributes to Neoplastic Transformation
inferredcites →https://doi.org/10.1128/mcb.25.9.3492-3505.2005openalex-snapshot
Orphan Nuclear Receptor LRH-1 Is Required To Maintain Oct4 Expression at the Epiblast Stage of Embryonic Development
inferredcites →https://doi.org/10.1134/s1990519x14010106openalex-snapshot
Transcription regulation of Oct4 (Pou5F1) gene by its distal enhancer
inferredcites →https://doi.org/10.1182/blood.v100.10.3536openalex-snapshot
hnRNP-K and Purα act together to repress the transcriptional activity of the CD43 gene promoter
inferredcites →https://doi.org/10.1182/blood.v93.6.2111.406k24_2111_2120openalex-snapshot
Identification of the Poly(C) Binding Protein in the Complex Associated With the 3′ Untranslated Region of Erythropoietin Messenger RNA
inferredcites →https://doi.org/10.1186/2045-9769-3-7openalex-snapshot
Role of Oct4 in the early embryo development
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1242/dev.122.3.881openalex-snapshot
Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells
inferredcites →https://doi.org/10.1261/rna.042788.113openalex-snapshot
Translation control of TAK1 mRNA by hnRNP K modulates LPS-induced macrophage activation
inferredcites →https://doi.org/10.1371/journal.pgen.1004933openalex-snapshot
hnRNP K Coordinates Transcriptional Silencing by SETDB1 in Embryonic Stem Cells
inferredcites →https://doi.org/10.1371/journal.pone.0027345openalex-snapshot
Derivation, Characterization, and Stable Transfection of Induced Pluripotent Stem Cells from Fischer344 Rats
inferredcites →https://doi.org/10.15252/embr.201846255openalex-snapshot
ChIP‐Atlas: a data‐mining suite powered by full integration of public ChIP‐seq data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4755772openalex-extracted
Cross-Validation of Conserved Osteoblast-Specific Enhancers Illuminates Bone Diseases and Early Skeletal Evolution
inferred← citeshttps://doi.org/10.1002/1878-0261.13714openalex-snapshot
Transcription factor 4 is a key mediator of oncogenesis in neuroblastoma by promoting MYC activity
inferred← citeshttps://doi.org/10.1016/j.cdev.2024.203924openalex-snapshot
Xenopus tropicalis osteoblast-specific open chromatin regions reveal promoters and enhancers involved in human skeletal phenotypes and shed light on early vertebrate evolution
inferred← citeshttps://doi.org/10.1016/j.celrep.2023.113177openalex-snapshot
TOBF1 modulates mouse embryonic stem cell fate through regulating alternative splicing of pluripotency genes
inferred← citeshttps://doi.org/10.1016/j.stemcr.2026.102950openalex-snapshot
PCBP1 orchestrates amino acid metabolism burst during the naïve-to-primed pluripotency transition
inferred← citeshttps://doi.org/10.1093/bib/bbag497openalex-snapshot
scASprofiler: profiling single-cell RNA splicing with a deep convolutional generative network
inferred← citeshttps://doi.org/10.1098/rsob.220065openalex-snapshot
The functional diversity of the POUV-class proteins across vertebrates
inferred← citeshttps://doi.org/10.1101/2021.03.26.436939openalex-snapshot
Phase separation of RNA-binding protein promotes polymerase engagement and transcription
inferred← citeshttps://doi.org/10.1101/2023.01.03.522557openalex-snapshot
TOBF1 modulates mouse embryonic stem cell fate through co-transcriptional regulation of alternative splicing
inferred← citeshttps://doi.org/10.1101/2023.08.30.555543openalex-snapshot
Architecture and evolutionary conservation of Xenopus tropicalis osteoblast-specific regulatory regions shed light on bone diseases and early skeletal evolution
inferred← citeshttps://doi.org/10.1101/2024.09.07.611681openalex-snapshot
Pcbp1 constrains Oct4 expression in the context of pluripotency
inferred← citeshttps://doi.org/10.1134/s1990519x20060036openalex-snapshot
Derivation and Characterization of Pcbp1-Deficient Mouse Embryonic Stem Cells
inferred← citeshttps://doi.org/10.1186/s13578-024-01284-8openalex-snapshot
SOX2 interacts with hnRNPK to modulate alternative splicing in mouse embryonic stem cells
inferred← citeshttps://doi.org/10.1186/s13619-020-00046-4openalex-snapshot
Retrotransposons in pluripotent stem cells
inferred← citeshttps://doi.org/10.3390/cells9040879openalex-snapshot
Human AlphoidtetO Artificial Chromosome as a Gene Therapy Vector for the Developing Hemophilia A Model in Mice
inferred← citeshttps://doi.org/10.3390/ijms21228759openalex-snapshot
Phylostratic Shift of Whole-Genome Duplications in Normal Mammalian Tissues towards Unicellularity Is Driven by Developmental Bivalent Genes and Reveals a Link to Cancer
inferred← citeshttps://doi.org/10.3390/ijms24054862openalex-snapshot
Tryptophan Hydroxylase-2-Mediated Serotonin Biosynthesis Suppresses Cell Reprogramming into Pluripotent State
inferred← citeshttps://doi.org/10.6084/m9.figshare.26787304openalex-snapshot
Additional file 1 of SOX2 interacts with hnRNPK to modulate alternative splicing in mouse embryonic stem cells
inferred← citeshttps://doi.org/10.6084/m9.figshare.26787310openalex-snapshot
Additional file 2 of SOX2 interacts with hnRNPK to modulate alternative splicing in mouse embryonic stem cells
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