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Cross-Validation of Conserved Osteoblast-Specific Enhancers Illuminates Bone Diseases and Early Skeletal Evolution
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Calcineurin/NFAT Signaling in Osteoblasts Regulates Bone Mass
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Targeted Disruption of Results in a Complete Lack of Bone Formation owing to Maturational Arrest of Osteoblasts
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The RUNX2 Cistrome in Osteoblasts
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Wnt/β-Catenin Signaling Mediates Osteoblast Differentiation Triggered by Peptide-induced α5β1 Integrin Priming in Mesenchymal Skeletal Cells
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In vivo expression of mRNA for the Ca++-binding protein SPARC (osteonectin) revealed by in situ hybridization.
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Fra-2/AP-1 controls bone formation by regulating osteoblast differentiation and collagen production
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Epigenetic Marks Define the Lineage and Differentiation Potential of Two Distinct Neural Crest-Derived Intermediate Odontogenic Progenitor Populations
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Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
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Parallel Evolution of Ameloblastic scpp Genes in Bony and Cartilaginous Vertebrates
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Skeletal Mineralization in Association with Type X Collagen Expression Is an Ancestral Feature for Jawed Vertebrates
inferredcites →https://doi.org/10.1093/nar/gkaa223openalex-extracted
Pervasive and CpG-dependent promoter-like characteristics of transcribed enhancers
inferredcites →https://doi.org/10.1093/nar/gkac199openalex-extracted
ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data
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Genome-wide localization and expression profiling establish Sp2 as a sequence-specific transcription factor regulating vitally important genes
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deepTools: a flexible platform for exploring deep-sequencing data
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GC skew is a conserved property of unmethylated CpG island promoters across vertebrates
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A dynamic history of gene duplications and losses characterizes the evolution of the SPARC family in eumetazoans
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DNA methylation patterns of transcription factor binding regions characterize their functional and evolutionary contexts
inferredcites →https://doi.org/10.1101/582171openalex-extracted
An ATAC-seq atlas of chromatin accessibility in mouse tissues
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High constitutive activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins
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Nucleotide composition-linked divergence of vertebrate core promoter architecture
inferredcites →https://doi.org/10.1101/gr.134833.111openalex-extracted
Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis
inferredcites →https://doi.org/10.1101/gr.192294.115openalex-extracted
Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions
inferredcites →https://doi.org/10.1101/gr.232488.117openalex-extracted
An atlas of chromatin accessibility in the adult human brain
inferredcites →https://doi.org/10.1101/gr.6783507openalex-extracted
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inferredcites →https://doi.org/10.1101/pdb.top097915openalex-extracted
Genomics Methods for Xenopus Embryos and Tissues
inferredcites →https://doi.org/10.1111/ede.12104openalex-extracted
Embryonic development of fin spines in Callorhinchus milii (Holocephali); implications for chondrichthyan fin spine evolution
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Two families of Xenopus tropicalis skeletal genes display well‐conserved expression patterns with mammals in spite of their highly divergent regulatory regions
inferredcites →https://doi.org/10.1126/sciadv.aba4147openalex-extracted
VGLL4 promotes osteoblast differentiation by antagonizing TEADs-inhibited Runx2 transcription
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The Genome of the Western Clawed Frog Xenopus tropicalis
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Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
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Restricted Specificity of Xenopus TFIIIA for Transcription of Somatic 5S rRNA Genes
inferredcites →https://doi.org/10.1177/002215549804600405openalex-extracted
Pex mRNA Is Localized in Developing Mouse Osteoblasts and Odontoblasts
inferredcites →https://doi.org/10.1186/1471-2148-11-307openalex-extracted
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inferredcites →https://doi.org/10.1186/1471-2164-15-693openalex-extracted
Relating gene expression evolution with CpG content changes
inferredcites →https://doi.org/10.1186/gb-2005-6-4-r33openalex-extracted
Promoter features related to tissue specificity as measured by Shannon entropy
inferredcites →https://doi.org/10.1186/gb-2010-11-3-r25openalex-extracted
A scaling normalization method for differential expression analysis of RNA-seq data
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r52openalex-extracted
Genomic occupancy of Runx2 with global expression profiling identifies a novel dimension to control of osteoblastogenesis
inferredcites →https://doi.org/10.1186/s12862-018-1241-yopenalex-extracted
Evolution of dental tissue mineralization: an analysis of the jawed vertebrate SPARC and SPARC-L families
inferredcites →https://doi.org/10.1186/s12864-015-2070-7openalex-extracted
Functionally conserved enhancers with divergent sequences in distant vertebrates
inferredcites →https://doi.org/10.1186/s12864-020-07078-9openalex-extracted
A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues
inferredcites →https://doi.org/10.1186/s12915-020-00863-8openalex-extracted
Functional signatures of evolutionarily young CTCF binding sites
inferredcites →https://doi.org/10.1186/s40851-019-0125-3openalex-extracted
Growth and mineralogy in dental plates of the holocephalan Harriotta raleighana (Chondrichthyes): novel dentine and conserved patterning combine to create a unique chondrichthyan dentition
inferredcites →https://doi.org/10.1242/dev.108.4.717openalex-extracted
Transcription of a mutant collagen I gene is a cell type and stage-specific marker for odontoblast and osteoblast differentiation
inferredcites →https://doi.org/10.1242/dev.127.23.5123openalex-extracted
Hereditary spherocytosis in zebrafishrieslingillustrates evolution of erythroid β-spectrin structure, and function in red cell morphogenesis and membrane stability
inferredcites →https://doi.org/10.1242/dev.178996openalex-extracted
Exciting times to study the identity and evolution of cell types
inferredcites →https://doi.org/10.1258/002367796780739871openalex-extracted
Recommendations for euthanasia of experimental animals: Part 1
inferredcites →https://doi.org/10.1371/journal.pcbi.1010378openalex-extracted
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inferredcites →https://doi.org/10.1371/journal.pgen.1002745openalex-extracted
WNT16 Influences Bone Mineral Density, Cortical Bone Thickness, Bone Strength, and Osteoporotic Fracture Risk
inferredcites →https://doi.org/10.1371/journal.pgen.1005268openalex-extracted
Phylum-Level Conservation of Regulatory Information in Nematodes despite Extensive Non-coding Sequence Divergence
inferredcites →https://doi.org/10.1371/journal.pgen.1010073openalex-extracted
Evolutionary insights into primate skeletal gene regulation using a comparative cell culture model
inferredcites →https://doi.org/10.1371/journal.pone.0047967openalex-extracted
E2F6 Associates with BRG1 in Transcriptional Regulation
inferredcites →https://doi.org/10.1371/journal.pone.0101606openalex-extracted
Efficacy of Tricaine Methanesulfonate (MS-222) as an Anesthetic Agent for Blocking Sensory-Motor Responses in Xenopus laevis Tadpoles
inferredcites →https://doi.org/10.1371/journal.pone.0188056openalex-extracted
Genome-wide DNase hypersensitivity, and occupancy of RUNX2 and CTCF reveal a highly dynamic gene regulome during MC3T3 pre-osteoblast differentiation
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-extracted
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.15252/embj.2020104913openalex-extracted
Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates
inferredcites →https://doi.org/10.1679/aohc.71.131openalex-extracted
Inhibition of the terminal differentiation of odontoblasts and their transdifferentiation into osteoblasts in Runx2 transgenic mice
inferredcites →https://doi.org/10.3389/fgene.2015.00283openalex-extracted
Molecular footprinting of skeletal tissues in the catshark Scyliorhinus canicula and the clawed frog Xenopus tropicalis identifies conserved and derived features of vertebrate calcification
inferredcites →https://doi.org/10.3389/fgene.2015.00297openalex-extracted
On the evolutionary relationship between chondrocytes and osteoblasts
inferredcites →https://doi.org/10.3389/fgene.2020.571694openalex-extracted
Mineralization of the Callorhinchus Vertebral Column (Holocephali; Chondrichthyes)
inferredcites →https://doi.org/10.3389/fgene.2021.620659openalex-extracted
Evolution of Matrix Gla and Bone Gla Protein Genes in Jawed Vertebrates
inferredcites →https://doi.org/10.3389/fphys.2019.00048openalex-extracted
Xenopus tropicalis: Joining the Armada in the Fight Against Blood Cancer
inferredcites →https://doi.org/10.7554/elife.52648openalex-extracted
Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors
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