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Locating the vertices of a steiner tree in an arbitrary metric space
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/bf01732471openalex-snapshot
Frequency of insertion-deletion, transversion, and transition in the evolution of 5S ribosomal RNA
inferredcites →https://doi.org/10.1016/0022-5193(73)90252-xopenalex-snapshot
A method for constructing maximum parsimony ancestral amino acid sequences on a given network
inferredcites →https://doi.org/10.1016/0097-3165(74)90050-8openalex-snapshot
An algorithm for the distance between two finite sequences
inferredcites →https://doi.org/10.1016/b978-0-12-775950-0.50007-8openalex-snapshot
Some Combinatorial Problems Studied Experimentally on Computing Machines
inferredcites →https://doi.org/10.1016/c2013-0-11736-9openalex-snapshot
Applications of Number Theory to Numerical Analysis
inferredcites →https://doi.org/10.1017/9781316276259.010openalex-snapshot
Phylogenetic analysis: models and estimation procedures
inferredcites →https://doi.org/10.1038/newbio245232a0openalex-snapshot
Evolution of 5S RNA and the Non-randomness of Base Replacement
inferredcites →https://doi.org/10.1093/sysbio/19.1.83openalex-snapshot
Methods for Computing Wagner Trees
inferredcites →https://doi.org/10.1093/sysbio/20.4.406openalex-snapshot
Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology
inferredcites →https://doi.org/10.1111/j.1558-5646.1967.tb03411.xopenalex-snapshot
PHYLOGENETIC ANALYSIS: MODELS AND ESTIMATION PROCEDURES
inferredcites →https://doi.org/10.1137/0114025openalex-snapshot
On Steiner’s Problem with Rectilinear Distance
inferredcites →https://doi.org/10.1145/321796.321811openalex-snapshot
The String-to-String Correction Problem
inferredcites →https://doi.org/10.2307/1523704openalex-snapshot
The American Journal of Human Genetics
inferredcites →https://doi.org/10.2307/2412116openalex-snapshot
Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology
inferredcites →https://doi.org/10.2307/2529676openalex-snapshot
Minimum Mutation Fits to a Given Tree
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria
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A NOVEL METHOD FOR ECONOMICAL DIAGNOSIS OF CLADOGRAMS UNDER SANKOFF OPTIMIZATION
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Tree Searches Under Sankoff Parsimony
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Phylogeny of East Asian Bufonids Inferred from Mitochondrial DNA Sequences (Anura: Amphibia)
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Reducing Distortion in Phylogenetic Networks
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Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution
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A Lower Bound for the Breakpoint Phylogeny Problem
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Methods to Identify and Study the Evolution of Pseudogenes Using a Phylogenetic Approach
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A Guide to Phylogenomic Inference
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How to Infer Ancestral Genome Features by Parsimony: Dynamic Programming over an Evolutionary Tree
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Computing Shortest Networks with Fixed Topologies
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Methods to Study the Occurrence and the Evolution of Pseudogenes Through a Phylogenetic Approach
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Comparative Methods for Reconstructing Ancient Genome Organization
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The Tree Labeling Polytope: A Unified Approach to Ancestral Reconstruction Problems
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Dynamic Programming Algorithms for Fast and Accurate Cell Lineage Tree Reconstruction from CRISPR-Based Lineage Tracing Data
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A Sankoff-Rousseau-Like Algorithm for Minimizing Lateral Gene Transfers and Losses on Single Origin Characters
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Optimization Alignment:Down,Up,Error,and Improvements
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Alignment characters, dynamic programming and heuristic solutions
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Rectilinear Steiner Trees
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Homology and Phylogenetic Inference in Biological and Material Cultural Evolution
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Semimetric Properties of Sørensen-Dice and Tversky Indexes
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The SCJ Small Parsimony Problem for Weighted Gene Adjacencies
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Ancestral Reconstruction by Asymmetric Wagner Parsimony over Continuous Characters and Squared Parsimony over Distributions
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A tree � a window � a hill; generalization of nearest-neighbor interchange in phylogenetic optimization
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Weber's problem and weiszfeld's algorithm in general spaces
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Frequency of insertion-deletion, transversion, and transition in the evolution of 5S ribosomal RNA
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Approximation algorithms for tree alignment with a given phylogeny
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The evolutionary relationships among known life forms
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Minimum steiner trees in normed planes
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Worst-case minimum rectilinear steiner trees in all dimensions
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Fixed topology steiner trees and spanning forests with applications in network communications
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Testing Empirical Support for Evolutionary Models that Root the Tree of Life
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Felsenstein Phylogenetic Likelihood
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Node Coincidence in Metric Minimum Weighted Length Graph Embeddings
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A tight lower bound for the Steiner ratio in Minkowski planes
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The computational complexity of calculating partition functions of optimal medians with Hamming distance
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A Novel Polynomial-Time Algorithm for Automatic Layout of Branching Cables in a Fixed Topology
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Startle: A star homoplasy approach for CRISPR-Cas9 lineage tracing
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The tree labeling polytope: A unified approach to ancestral reconstruction problems
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Fixed Topology Minimum-Length Trees with Neighborhoods: A Steiner tree based approach
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Temporal information, fossil record and phylogeny
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Phylogenetic analysis and reconfiguration of genera in the cestode order Diphyllidea
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Minimizing path lengths in rectilinear Steiner minimum trees with fixed topology
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Counting and sampling SCJ small parsimony solutions
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The relative performance of indel-coding methods in simulations
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Phylogeny of the Celastreae (Celastraceae) and the relationships of Catha edulis (qat) inferred from morphological characters and nuclear and plastid genes
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Evolutionary and biogeographic history of weasel-like carnivorans (Musteloidea)
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Near intron pairs and the metazoan tree
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Phylogeny of the Asian Hedyotis–Oldenlandia complex (Spermacoceae, Rubiaceae): Evidence for high levels of polyphyly and the parallel evolution of diplophragmous capsules
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Dubious resolution and support from published sparse supermatrices: The importance of thorough tree searches
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Biogeography of the Malagasy Celastraceae: Multiple independent origins followed by widespread dispersal of genera from Madagascar
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The Steiner ratio for the dual normed plane
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[24] Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
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Chapter 4 Generalizations
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Chapter 1 Steiner Trees in Other Metric Spaces
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Chapter 2 Phylogenetic Trees
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Fixed topology Steiner trees and spanning forests
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A lower bound for the breakpoint phylogeny problem
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Conodont affinity and chordate phylogeny
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The time of origin of whales and the role of behavioral changes in the terrestrial-aquatic transition
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Phylogenetic analyses and the fossil record: Tests and inferences, hypotheses and models
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Skull anatomy ofDakosaurus andiniensis(Thalattosuchia: Crocodylomorpha) and the phylogenetic position of Thalattosuchia
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Heuristics for the Phylogeny Problem
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Extended embryo retention and viviparity in the first amniotes
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Inferring cell differentiation maps from lineage tracing data
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Randomization Analyses: Mimicry, Geographic Variation and Cultural Evolution of Song in Brood‐Parasitic Straw‐Tailed Whydahs, Vidua fischeri
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Inferring and Testing Hypotheses of Cladistic Character Dependence by Using Character Compatibility
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Intraspecific Variability and Timing in Ancestral Ecology Reconstruction: A Test Case from the Cape Flora
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Uncertainty in the Age of Fossils and the Stratigraphic Fit to Phylogenies
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Algorithms for Phylogenetic Footprinting
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Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution
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Exactly Computing the Parsimony Scores on Phylogenetic Networks Using Dynamic Programming
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Determining Significant Correlation Between Pairs of Extant Characters in a Small Parsimony Framework
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Parsimony and the problem of inapplicables in sequence data
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Probabilistic models and their impact on the accuracy of reconstructed ancestral protein sequences
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The early introduction of dynamic programming into computational biology
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Median and small parsimony problems on RNA trees
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Fast tumor phylogeny regression via tree-structured dual dynamic programming
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Determining the evolutionary history of gene families
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Splice Sites Seldom Slide: Intron Evolution in Oomycetes
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Detecting isolation by distance using phylogenies of genes.
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The Triangle Inequality and Character Analysis
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Squared-Change Parsimony Reconstructions of Ancestral States for Continuous-Valued Characters on a Phylogenetic Tree
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Missing Data Versus Missing Characters in Phylogenetic Analysis
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Simultaneously Mapping and Superimposing Landmark Configurations with Parsimony as Optimality Criterion
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The More, the Better: The Use of Multiple Landmark Configurations to Solve the Phylogenetic Relationships in Musteloids
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Coevolution analysis of amino-acids reveals diversified drug-resistance solutions in viral sequences: a case study of hepatitis B virus
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Phylogeny of Phorinae sensu latu (Diptera: Phoridae) inferred from a morphological analysis with comprehensive taxon sampling and an uncommon method of character coding
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EpiPAMPAS: Rapid detection of intra-protein epistasis via parsimonious ancestral state reconstruction and counting mutations
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Temporal population structure of invasive Group B Streptococcus during a period of rising disease incidence shows expansion of a CC17 clone
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Predicting Human Minisatellite Polymorphism
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Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting
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Asymmetries arising from the space-filling nature of vascular networks
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Solving the net matching problem in high-performance chip design
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Simplification Methods for Maximum Parsimony: A Relational View
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An FPGA hardware acceleration of the indirect calculation of tree lengths method for phylogenetic tree reconstruction
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An FPGA implementation of a phylogenetic tree reconstruction algorithm using an alternative second-pass optimization
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A high performance FPGA-based core for phylogenetic analysis with Maximum Parsimony method
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A hardware acceleration of a phylogenetic tree reconstruction with maximum parsimony algorithm using FPGA
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H3D: Heterogeneous Resources Aware Global Router for Face-to-Face Bonded 3D ICs
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Characterizing and Improving the Performance of Bioinformatics Workloads on the POWER5 Architecture
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Reassortment Networks for Investigating the Evolution of Segmented Viruses
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Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems
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The SCJ Small Parsimony Problem for Weighted Gene Adjacencies
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Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework
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High Performance Phylogenetic Analysis With Maximum Parsimony on Reconfigurable Hardware
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Maximum a posteriori probability assignment ( MAP ‐A): an optimality criterion for phylogenetic trees via weighting and dynamic programming
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Advances on tinamou phylogeny: an assembled cladistic study of the volant palaeognathous birds
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Likelihood approximations of implied weights parsimony can be selected over the Mk model by the Akaike information criterion
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Defying death: incorporating fossils into the phylogeny of the complex thalloid liverworts (Marchantiidae, Marchantiophyta) confirms high order clades but reveals discrepancies in family‐level relationships
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A reconsideration of inapplicable characters, and an approximation with step‐matrix recoding
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Parsimony analysis of phylogenomic datasets (II): evaluation of PAUP*, MEGA and MPBoot
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Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)
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On the four complementary aspects of hierarchical character relationships and their bearing on scoring constraints, expressed in a new syntax for character dependencies
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Parsimony optimization of phylogenetic networks
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Much ado about nothing: inapplicable data as insertion–deletion events
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Farewell to the requirement for character independence: phylogenetic methods to incorporate different types of dependence between characters
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Nothing to it: a reply to Wheeler's “much ado about nothing”
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Measuring homoplasy I: comprehensive measures of maximum and minimum cost under parsimony across discrete cost matrix character types
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Phylogenetic minimum description length: an optimality criterion based on algorithmic complexity
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A new phylogeny and classification of the tinamous, volant palaeognathous birds from the Neotropics
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Analysis of alternative homologies with parsimony and step‐matrix recoding
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Biogeography of the grasses (Poaceae): a phylogenetic approach to reveal evolutionary history in geographical space and geological time
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RECONSTRUCTING CHARACTER EVOLUTION ON POLYTOMOUS CLADOGRAMS
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PARSIMONY AND THE CHOICE BETWEEN DIFFERENT TRANSFORMATIONS FOR THE SAME CHARACTER SET
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Uneconomical Diagnosis of Cladograms: Comments on Wheeler and Nixon's Method for Sankoff Optimization
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Self-Weighted Optimization: Tree Searches and Character State Reconstructions under Implied Transformation Costs
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A Phylogeny of the Gulls (Aves: Larinae) Inferred from Osteological and Integumentary Characters
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Forum. Stratigraphic Fit to Phylogenies: A Proposed Solution
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Homology and the Optimization of DNA Sequence Data
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2001.tb00103.xopenalex-snapshot
Computer‐Intensive Randomization in Systematics
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2002.tb00287.xopenalex-snapshot
Simultaneous analysis of the basal lineages of Hymenoptera (Insecta) using sensitivity analysis
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2003.tb00368.xopenalex-snapshot
Iterative pass optimization of sequence data
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2003.tb00369.xopenalex-snapshot
Implied alignment: a synapomorphy-based multiple-sequence alignment method and its use in cladogram search
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2003.tb00378.xopenalex-snapshot
Search-based optimization
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2005.00073.xopenalex-snapshot
Scorpion higher phylogeny and classification, taxonomic anarchy, and standards for peer review in online publishing
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2006.00096.xopenalex-snapshot
Dynamic homology and the likelihood criterion
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2006.00122.xopenalex-snapshot
Continuous characters analyzed as such
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2007.00155.xopenalex-snapshot
Biodiversity among luminescent symbionts from squid of the genera Uroteuthis, Loliolus and Euprymna (Mollusca: Cephalopoda)
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2008.00217.xopenalex-snapshot
TNT, a free program for phylogenetic analysis
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2008.00229.xopenalex-snapshot
Is ACCTRAN better than DELTRAN?
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2008.00230.xopenalex-snapshot
The relative sensitivity of different alignment methods and character codings in sensitivity analysis
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2008.00236.xopenalex-snapshot
Evolution of small inversions in chloroplast genome: a case study from a recurrent inversion in angiosperms
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2009.00282.xopenalex-snapshot
POY version 4: phylogenetic analysis using dynamic homologies
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2009.00297.xopenalex-snapshot
Tracking the geographical spread of avian influenza (H5N1) with multiple phylogenetic trees
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2010.00302.xopenalex-snapshot
Phylogenetic morphometrics (I): the use of landmark data in a phylogenetic framework
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2010.00318.xopenalex-snapshot
Phylogenetic morphometrics (II): algorithms for landmark optimization
inferred← citeshttps://doi.org/10.1111/j.1096-3642.1993.tb00290.xopenalex-snapshot
Calabaria and the phylogeny of erycine snakes
inferred← citeshttps://doi.org/10.1111/j.1439-0469.2004.00225.xopenalex-snapshot
Phylogenetic signal and the utility of 12S and 16S mtDNA in frog phylogeny
inferred← citeshttps://doi.org/10.1111/j.1469-185x.1999.tb00045.xopenalex-snapshot
Conodont affinity and chordate phylogeny
inferred← citeshttps://doi.org/10.1111/j.1525-142x.2004.04005.xopenalex-snapshot
Comparative and phylogenetic analysis of developmental sequences
inferred← citeshttps://doi.org/10.1111/j.1558-5646.1990.tb05937.xopenalex-snapshot
A METHOD FOR TESTING THE CORRELATED EVOLUTION OF TWO BINARY CHARACTERS: ARE GAINS OR LOSSES CONCENTRATED ON CERTAIN BRANCHES OF A PHYLOGENETIC TREE?
inferred← citeshttps://doi.org/10.1111/j.1558-5646.1996.tb03863.xopenalex-snapshot
THE RECONSTRUCTION OF ANCESTRAL CHARACTER STATES
inferred← citeshttps://doi.org/10.1111/j.1558-5646.2010.00956.xopenalex-snapshot
DELAYED-RESPONSE PHYLOGENETIC CORRELATION: AN OPTIMIZATION-BASED METHOD TO TEST COVARIATION OF CONTINUOUS CHARACTERS
inferred← citeshttps://doi.org/10.11238/mammalianscience.52.23openalex-snapshot
レッサーパンダ（Ailurus fulgens）の進化的由来
inferred← citeshttps://doi.org/10.1126/science.adp4642openalex-snapshot
A geographic history of human genetic ancestry
inferred← citeshttps://doi.org/10.1126/science.adw5484openalex-snapshot
Mapping a complex evolutionary history
inferred← citeshttps://doi.org/10.1137/0145048openalex-snapshot
Simultaneous Solution of the RNA Folding, Alignment and Protosequence Problems
inferred← citeshttps://doi.org/10.1137/0221013openalex-snapshot
On the Exact Location of Steiner Points in General Dimension
inferred← citeshttps://doi.org/10.1137/140959948openalex-snapshot
On Computing the Maximum Parsimony Score of a Phylogenetic Network
inferred← citeshttps://doi.org/10.1137/s0097539796324636openalex-snapshot
Constructing Evolutionary Trees in the Presence of Polymorphic Characters
inferred← citeshttps://doi.org/10.1145/177424.177623openalex-snapshot
The tight lower bound for the Steiner ratio in Minkowski planes
inferred← citeshttps://doi.org/10.1145/195058.195454openalex-snapshot
Aligning sequences via an evolutionary tree
inferred← citeshttps://doi.org/10.1145/200994.201004openalex-snapshot
Optimal evaluation of array expressions on massively parallel machines
inferred← citeshttps://doi.org/10.1145/3088512openalex-snapshot
Reconciliation With Nonbinary Gene Trees Revisited
inferred← citeshttps://doi.org/10.1145/3588033openalex-snapshot
A Survey of Processing Systems for Phylogenetics and Population Genetics
inferred← citeshttps://doi.org/10.1145/369133.369170openalex-snapshot
Algorithms for phylogenetic footprinting
inferred← citeshttps://doi.org/10.1145/98524.98596openalex-snapshot
On minimal rectilinear Steiner trees in all dimensions
inferred← citeshttps://doi.org/10.1155/2013/472163openalex-snapshot
Algorithms of Ancestral Gene Length Reconstruction
inferred← citeshttps://doi.org/10.11606/d.41.2014.tde-15122014-135207openalex-snapshot
Diversidade filogenética de Potamotrygonocestus Brooks & Thorson, 1976 (Eucestoda: Onchoproteocephalidea)
inferred← citeshttps://doi.org/10.11606/t.41.2013.tde-01052013-155708openalex-snapshot
Análise cladística de Sympetrinae Tillyard, 1917 com ênfase no grupo de armadura femoral especializada: os gêneros de 'Erythemismorpha' (Insecta: Odonata: Libellulidae)
inferred← citeshttps://doi.org/10.11606/t.41.2014.tde-15122014-140626openalex-snapshot
Padrões espaciais de abundância e dinâmica populacional em longo prazo do camarão sete-barbas Xiphopenaeus kroyeri (Heller, 1862) na Enseada de Ubatuba, SP
inferred← citeshttps://doi.org/10.1177/15578666251386082openalex-snapshot
StarCDP: Dynamic Programming Algorithms for Fast and Accurate Cell Lineage Tree Reconstruction from CRISPR-Based Lineage Tracing Data
inferred← citeshttps://doi.org/10.1177/15578666261426009openalex-snapshot
From Small Parsimony to Horizontal Gene Transfer: Inferring Horizontal Transfer and Gene Loss for Single-Origin Characters
inferred← citeshttps://doi.org/10.1186/1471-2105-10-51openalex-snapshot
Optimized ancestral state reconstruction using Sankoff parsimony
inferred← citeshttps://doi.org/10.1186/1471-2105-12-18openalex-snapshot
Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states
inferred← citeshttps://doi.org/10.1186/1471-2105-16-s14-s6openalex-snapshot
Sampling and counting genome rearrangement scenarios
inferred← citeshttps://doi.org/10.1186/1471-2148-10-342openalex-snapshot
Molecular phylogeny of pearl oysters and their relatives (Mollusca, Bivalvia, Pterioidea)
inferred← citeshttps://doi.org/10.1186/1748-7188-7-9openalex-snapshot
Maximum Parsimony on Phylogenetic networks
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