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Temporal population structure of invasive Group B Streptococcus during a period of rising disease incidence shows expansion of a CC17 clone

https://doi.org/10.1101/447037
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1001/jama.230.8.1158openalex-snapshot
Group B streptococcal infections in infants. The importance of the various serotypes
inferredcites →https://doi.org/10.1001/jama.299.17.2056openalex-snapshot
Epidemiology of Invasive Group B Streptococcal Disease in the United States, 1999-2005
inferredcites →https://doi.org/10.1007/bf01681346openalex-snapshot
Locating the vertices of a steiner tree in an arbitrary metric space
inferredcites →https://doi.org/10.1016/j.cmi.2017.02.021openalex-snapshot
Short-read whole genome sequencing for determination of antimicrobial resistance mechanisms and capsular serotypes of current invasive Streptococcus agalactiae recovered in the USA
inferredcites →https://doi.org/10.1016/j.micpath.2015.07.018openalex-snapshot
Antigen I/II encoded by integrative and conjugative elements of Streptococcus agalactiae and role in biofilm formation
inferredcites →https://doi.org/10.1016/s1473-3099(14)70919-3openalex-snapshot
Incidence of invasive group B streptococcal disease and pathogen genotype distribution in newborn babies in the Netherlands over 25 years: a nationwide surveillance study
inferredcites →https://doi.org/10.1038/ncomms1325openalex-snapshot
A novel methodology for large-scale phylogeny partition
inferredcites →https://doi.org/10.1038/ncomms5544openalex-snapshot
Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.67openalex-snapshot
Maternal colonization with Streptococcus agalactiae and associated stillbirth and neonatal disease in coastal Kenya
inferredcites →https://doi.org/10.1038/srep20047openalex-snapshot
Clonal Complex 17 Group B Streptococcus strains causing invasive disease in neonates and adults originate from the same genetic pool
inferredcites →https://doi.org/10.1038/srep29799openalex-snapshot
Serotype IV Streptococcus agalactiae ST-452 has arisen from large genomic recombination events between CC23 and the hypervirulent CC17 lineages
inferredcites →https://doi.org/10.1073/pnas.1504725112openalex-snapshot
Sequence type 1 group B Streptococcus , an emerging cause of invasive disease in adults, evolves by small genetic changes
inferredcites →https://doi.org/10.1073/pnas.86.12.4731openalex-snapshot
Identification of a high-virulence clone of type III Streptococcus agalactiae (group B Streptococcus) causing invasive neonatal disease.
inferredcites →https://doi.org/10.1086/313936openalex-snapshot
Antibiotic Susceptibility Profiles for Group B Streptococci Isolated from Neonates, 1995-1998
inferredcites →https://doi.org/10.1093/bioinformatics/btq683openalex-snapshot
Scaffolding pre-assembled contigs using SSPACE
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btv421openalex-snapshot
Roary: rapid large-scale prokaryote pan genome analysis
inferredcites →https://doi.org/10.1093/cid/cit337openalex-snapshot
Emerging Trends in the Epidemiology of Invasive Group B Streptococcal Disease in England and Wales, 1991–2010
inferredcites →https://doi.org/10.1093/cid/cix021openalex-snapshot
2015 Epidemic of Severe Streptococcus agalactiae Sequence Type 283 Infections in Singapore Associated With the Consumption of Raw Freshwater Fish: A Detailed Analysis of Clinical, Epidemiological, and Bacterial Sequencing Data
inferredcites →https://doi.org/10.1093/cid/cix656openalex-snapshot
Infant Group B Streptococcal Disease Incidence and Serotypes Worldwide: Systematic Review and Meta-analyses
inferredcites →https://doi.org/10.1093/cid/cix896openalex-snapshot
Clinical and Laboratory Features of Group B Streptococcus Meningitis in Infants and Newborns: Study of 848 Cases in France, 2001–2014
inferredcites →https://doi.org/10.1093/infdis/jiu552openalex-snapshot
Evidence for Clonal Expansion After Antibiotic Selection Pressure: Pneumococcal Multilocus Sequence Types Before and After Mass Azithromycin Treatments
inferredcites →https://doi.org/10.1093/molbev/mst028openalex-snapshot
Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software
inferredcites →https://doi.org/10.1093/nar/gkh073openalex-snapshot
Database resources of the National Center for Biotechnology Information: update
inferredcites →https://doi.org/10.1093/nar/gkr1079openalex-snapshot
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
inferredcites →https://doi.org/10.1093/nar/gks576openalex-snapshot
EvolView, an online tool for visualizing, annotating and managing phylogenetic trees
inferredcites →https://doi.org/10.1093/nar/gku1196openalex-snapshot
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
inferredcites →https://doi.org/10.1093/nar/gkv1290openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1093/nar/gkw370openalex-snapshot
Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees
inferredcites →https://doi.org/10.1093/sysbio/20.4.406openalex-snapshot
Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology
inferredcites →https://doi.org/10.1093/ve/vew007openalex-snapshot
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
inferredcites →https://doi.org/10.1099/mgen.0.000083openalex-snapshot
Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1111/1462-2920.13550openalex-snapshot
Persistence of a dominant bovine lineage of group B S treptococcus reveals genomic signatures of host adaptation
inferredcites →https://doi.org/10.1111/ajo.12378openalex-snapshot
Early‐onset neonatal group B streptococcus sepsis following national risk‐based prevention guidelines
inferredcites →https://doi.org/10.1111/aogs.13211openalex-snapshot
Reduced incidence of neonatal early‐onset group B streptococcal infection after promulgation of guidelines for risk‐based intrapartum antibiotic prophylaxis in Sweden: analysis of a national population‐based cohort
inferredcites →https://doi.org/10.1111/mmi.13034openalex-snapshot
Manganese homeostasis and utilization in pathogenic bacteria
inferredcites →https://doi.org/10.1128/aac.01310-13openalex-snapshot
ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
inferredcites →https://doi.org/10.1128/br.1.1.3-97.1937openalex-snapshot
THE STREPTOCOCCI
inferredcites →https://doi.org/10.1128/cmr.11.3.497openalex-snapshot
Epidemiology of Group B Streptococcal Disease in the United States: Shifting Paradigms
inferredcites →https://doi.org/10.1128/iai.73.4.2273-2280.2005openalex-snapshot
Role of SraP, a Serine-Rich Surface Protein of Staphylococcus aureus , in Binding to Human Platelets
inferredcites →https://doi.org/10.1128/jb.00824-08openalex-snapshot
Integrative Conjugative Elements and Related Elements Are Major Contributors to the Genome Diversity ofStreptococcus agalactiae
inferredcites →https://doi.org/10.1128/jb.186.5.1518-1530.2004openalex-snapshot
eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data
inferredcites →https://doi.org/10.1128/jcm.00159-07openalex-snapshot
Multiplex PCR Assay for Rapid and Accurate Capsular Typing of Group B Streptococci
inferredcites →https://doi.org/10.1128/jcm.00189-08openalex-snapshot
Use of Phenotypic and Molecular Serotype Identification Methods To Characterize Previously Nonserotypeable Group B Streptococci
inferredcites →https://doi.org/10.1128/jcm.00355-16openalex-snapshot
Epidemiology of Invasive Group B Streptococcal Disease in Alberta, Canada, from 2003 to 2013
inferredcites →https://doi.org/10.1128/jcm.02417-12openalex-snapshot
Capsular Gene Typing of Streptococcus agalactiae Compared to Serotyping by Latex Agglutination
inferredcites →https://doi.org/10.1128/jcm.36.7.2115-2116.1998openalex-snapshot
Sudden Increase in Isolation of Group B Streptococci, Serotype V, Is Not Due to Emergence of a New Pulsed-Field Gel Electrophoresis Type
inferredcites →https://doi.org/10.1128/jcm.41.6.2530-2536.2003openalex-snapshot
Multilocus Sequence Typing System for Group B Streptococcus
inferredcites →https://doi.org/10.1128/msystems.00074-17openalex-snapshot
Parallel Evolution of Group B Streptococcus Hypervirulent Clonal Complex 17 Unveils New Pathoadaptive Mutations
inferredcites →https://doi.org/10.1136/pgmj.44.513.549openalex-snapshot
Neonatal meningitis due to Streptococcus agalactiae
inferredcites →https://doi.org/10.1137/0128004openalex-snapshot
Minimal Mutation Trees of Sequences
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/gb-2012-13-6-r56openalex-snapshot
Toward almost closed genomes with GapFiller
inferredcites →https://doi.org/10.1186/s13073-014-0090-6openalex-snapshot
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1371/journal.pone.0048918openalex-snapshot
Characterization of a New CAMP Factor Carried by an Integrative and Conjugative Element in Streptococcus agalactiae and Spreading in Streptococci
inferredcites →https://doi.org/10.1371/journal.pone.0125985openalex-snapshot
Genomic Analysis Reveals the Molecular Basis for Capsule Loss in the Group B Streptococcus Population
inferredcites →https://doi.org/10.3201/eid1410.071660openalex-snapshot
Rise and Persistence of Global M1T1 Clone ofStreptococcus pyogenes
inferredcites →https://doi.org/10.3201/eid1410.080185openalex-snapshot
Invasive Group B Streptococcal Infections in Infants, France
inferredcites →https://doi.org/10.3389/fmicb.2016.01265openalex-snapshot
Genomic Analysis Reveals Multi-Drug Resistance Clusters in Group B Streptococcus CC17 Hypervirulent Isolates Causing Neonatal Invasive Disease in Southern Mainland China
inferredcites →https://doi.org/10.7717/peerj.4553openalex-snapshot
Including autapomorphies is important for paleontological tip-dating with clocklike data, but not with non-clock data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/cid/ciaa1087openalex-snapshot
Uncovering Infant Group B Streptococcal (GBS) Disease Clusters in the United Kingdom and Ireland Through Genomic Analysis: A Population-based Epidemiological Study
inferred← citeshttps://doi.org/10.1101/574152openalex-snapshot
Pan-GWAS of Streptococcus agalactiae highlights lineage-specific genes associated with virulence and niche adaptation
inferred← citeshttps://doi.org/10.1128/mbio.00728-20openalex-snapshot
Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation
inferred← citeshttps://doi.org/10.70675/aefd0578z4bbbz45aazbe9bz68d2ddc66a37openalex-snapshot
Prophages et pathogénicité de Streptococcus agalactiae chez le nouveau-né
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