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Synonymous and nonsynonymous rate variation in nuclear genes of mammals
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Variance to Mean Ratio, R(t), for Poisson Processes on Phylogenetic Trees
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Robustness of the Estimator of the Index of Dispersion for DNA Sequences
inferredcites →https://doi.org/10.1007/bf00166595openalex-snapshot
Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theory
inferredcites →https://doi.org/10.1007/bf00167113openalex-snapshot
New methods for estimating the numbers of synonymous and nonsynonymous substitutions
inferredcites →https://doi.org/10.1007/bf00173196openalex-snapshot
A method for estimating the numbers of synonymous and nonsynonymous substitutions per site
inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
inferredcites →https://doi.org/10.1007/bf01732067openalex-snapshot
Molecular evolution of mRNA: A method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application
inferredcites →https://doi.org/10.1007/bf02407308openalex-snapshot
Unbiased estimation of the rates of synonymous and nonsynonymous substitution
inferredcites →https://doi.org/10.1007/bf02931754openalex-snapshot
Pattern of synonymous and nonsynonymous substitutions: An indicator of mechanisms of molecular evolution
inferredcites →https://doi.org/10.1017/cbo9780511623486openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1038/217624a0openalex-snapshot
Evolutionary Rate at the Molecular Level
inferredcites →https://doi.org/10.1038/351652a0openalex-snapshot
Adaptive protein evolution at the Adh locus in Drosophila
inferredcites →https://doi.org/10.1038/scientificamerican1179-98openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1073/pnas.90.22.10676openalex-snapshot
An examination of the generation-time effect on molecular evolution.
inferredcites →https://doi.org/10.1093/oso/9780195068832.001.0001openalex-snapshot
The Causes of Molecular Evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025781openalex-snapshot
Correlated rates of synonymous site evolution across plant genomes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040003openalex-snapshot
Evolution of the Zfx and Zfy genes: rates and interdependence between the genes.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040142openalex-snapshot
Consistent variation in amino-acid substitution rate, despite uniformity of mutation rate: protein evolution in mammals is not neutral.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040152openalex-snapshot
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040153openalex-snapshot
A codon-based model of nucleotide substitution for protein-coding DNA sequences.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040343openalex-snapshot
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040410openalex-snapshot
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040576openalex-snapshot
Lineage effects and the index of dispersion of molecular evolution.
inferredcites →https://doi.org/10.1126/science.185.4154.862openalex-snapshot
Amino Acid Difference Formula to Help Explain Protein Evolution
inferredcites →https://doi.org/10.5860/choice.30-2064openalex-snapshot
The causes of molecular evolution
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1016/j.jbi.2022.104234openalex-snapshot
Comparative evaluation of the heterozygous variant standard deviation as a quality measure for next-generation sequencing
inferred← citeshttps://doi.org/10.1016/j.jmb.2003.11.007openalex-snapshot
Are Residues in a Protein Folding Nucleus Evolutionarily Conserved?
inferred← citeshttps://doi.org/10.1016/j.jmb.2013.10.040openalex-snapshot
RIG-I-Like Receptors Evolved Adaptively in Mammals, with Parallel Evolution at LGP2 and RIG-I
inferred← citeshttps://doi.org/10.1016/j.margen.2016.10.006openalex-snapshot
Comparative mitogenomic analysis of three species of periwinkles: Littorina fabalis, L. obtusata and L. saxatilis
inferred← citeshttps://doi.org/10.1016/j.mito.2011.01.004openalex-snapshot
Mitogenomic analysis of Chinese snub-nosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in high-altitude adaptation
inferred← citeshttps://doi.org/10.1016/j.mito.2014.05.004openalex-snapshot
High-throughput sequencing in mitochondrial DNA research
inferred← citeshttps://doi.org/10.1016/j.molimm.2019.10.014openalex-snapshot
Analyses of RAG1 and RAG2 genes suggest different evolutionary rates in the Cetacea lineage
inferred← citeshttps://doi.org/10.1016/j.peptides.2017.03.007openalex-snapshot
Adaptive evolution of insect selective excitatory β-type sodium channel neurotoxins from scorpion venom
inferred← citeshttps://doi.org/10.1016/j.resmic.2007.02.007openalex-snapshot
Compositional dynamics of guanine and cytosine content in prokaryotic genomes
inferred← citeshttps://doi.org/10.1016/j.tig.2020.07.008openalex-snapshot
Studying Natural Selection in the Era of Ubiquitous Genomes
inferred← citeshttps://doi.org/10.1016/j.toxicon.2012.06.011openalex-snapshot
Diversity and evolution of conotoxins in Conus virgo, Conus eburneus, Conus imperialis and Conus marmoreus from the South China Sea
inferred← citeshttps://doi.org/10.1016/j.tpb.2021.03.003openalex-snapshot
A nearly-neutral biallelic Moran model with biased mutation and linear and quadratic selection
inferred← citeshttps://doi.org/10.1016/j.tpb.2021.09.005openalex-snapshot
Quantifying the impact of changes in effective population size and expression level on the rate of coding sequence evolution
inferred← citeshttps://doi.org/10.1016/j.virol.2008.12.018openalex-snapshot
An expanded clade of rodent Trim5 genes
inferred← citeshttps://doi.org/10.1016/j.ygcen.2012.04.022openalex-snapshot
Rates of molecular evolution vary in vertebrates for insulin-like growth factor-1 (IGF-1), a pleiotropic locus that regulates life history traits
inferred← citeshttps://doi.org/10.1016/j.ygcen.2016.03.011openalex-snapshot
Analyzing endocrine system conservation and evolution
inferred← citeshttps://doi.org/10.1016/j.ygcen.2018.08.021openalex-snapshot
Molecular evolution of prolactin in Chiroptera: Accelerated evolution and a large insertion in vespertilionid bats
inferred← citeshttps://doi.org/10.1016/j.ygeno.2014.03.006openalex-snapshot
Multi-perspective quality control of Illumina exome sequencing data using QC3
inferred← citeshttps://doi.org/10.1016/j.ygeno.2018.03.016openalex-snapshot
Description and phylogeny of the mitochondrial genome of Sabethes chloropterus, Sabethes glaucodaemon and Sabethes belisarioi (Diptera: Culicidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2003.09.017openalex-snapshot
Range expansion leading to departures from neutrality in the nonsymbiotic hemoglobin gene and the cpDNA trnL–trnF intergenic spacer in Trema dielsiana (Ulmaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.05.006openalex-snapshot
Diverse selective modes among orthologs/paralogs of the chalcone synthase (Chs) gene family of Arabidopsis thaliana and its relative A. halleri ssp. gemmifera
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.02.014openalex-snapshot
Molecular evolution of rbcL in the mycoheterotrophic coralroot orchids (Corallorhiza Gagnebin, Orchidaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.07.010openalex-snapshot
Rates of nucleotide substitution in Cornaceae (Cornales)—Pattern of variation and underlying causal factors
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.06.014openalex-snapshot
The evolution of mitochondrial genomes in subterranean caviomorph rodents: Adaptation against a background of purifying selection
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.08.026openalex-snapshot
A codon model of nucleotide substitution with selection on synonymous codon usage
inferred← citeshttps://doi.org/10.1016/s0168-9525(01)02272-7openalex-snapshot
Molecular phylogenetics: state-of-the-art methods for looking into the past
inferred← citeshttps://doi.org/10.1016/s0169-5347(00)01994-7openalex-snapshot
Statistical methods for detecting molecular adaptation
inferred← citeshttps://doi.org/10.1016/s0169-5347(98)01507-9openalex-snapshot
Growing up with dinosaurs: molecular dates and the mammalian radiation
inferred← citeshttps://doi.org/10.1016/s0378-1119(03)00656-5openalex-snapshot
Longitudinal phylogenetic tree of within-host viral evolution from noncontemporaneous samples: a distance-based sequential-linking method
inferred← citeshttps://doi.org/10.1016/s0531-5131(02)01149-4openalex-snapshot
On the roles of mutation and selection in genome evolution: a population genetic approach
inferred← citeshttps://doi.org/10.1016/s0959-437x(00)00247-1openalex-snapshot
The neutral theory in the genomic era
inferred← citeshttps://doi.org/10.1016/s0959-437x(02)00348-9openalex-snapshot
Inference of selection from multiple species alignments
inferred← citeshttps://doi.org/10.1016/s0965-1748(03)00043-2openalex-snapshot
Multiple acyl-CoA desaturase-encoding transcripts in pheromone glands of Helicoverpa assulta, the oriental tobacco budworm
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00248-8openalex-snapshot
A preliminary phylogeny of the scale insects (Hemiptera: Sternorrhyncha: Coccoidea) based on nuclear small-subunit ribosomal DNA
inferred← citeshttps://doi.org/10.1016/s1672-0229(06)60030-2openalex-snapshot
Evaluation of Six Methods for Estimating Synonymous and Nonsynonymous Substitution Rates
inferred← citeshttps://doi.org/10.1017/s0016672307009032openalex-snapshot
Mating system and recombination affect molecular evolution in fourTriticeaespecies
inferred← citeshttps://doi.org/10.1023/a:1024875232511openalex-snapshot
Excess non-synonymous substitutions suggest that positive selection episodes occurred during the evolution of DNA-binding domains in the Arabidopsis R2R3-MYB gene family
inferred← citeshttps://doi.org/10.1038/35084556openalex-snapshot
Plant evolution and development in a post-genomic context
inferred← citeshttps://doi.org/10.1038/gene.2009.22openalex-snapshot
Adaptive evolution of interferon-γ in Glire lineage and evidence for a recent selective sweep in Mus. m. domesticus
inferred← citeshttps://doi.org/10.1038/nature05984openalex-snapshot
Positive darwinian selection at the imprinted MEDEA locus in plants
inferred← citeshttps://doi.org/10.1038/nature12219openalex-snapshot
The role of epistasis in protein evolution
inferred← citeshttps://doi.org/10.1038/ncomms1100openalex-snapshot
B-cell depletion reveals a role for antibodies in the control of chronic HIV-1 infection
inferred← citeshttps://doi.org/10.1038/ng1113openalex-snapshot
The application of molecular genetic approaches to the study of human evolution
inferred← citeshttps://doi.org/10.1038/npre.2010.4784.1openalex-snapshot
PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
inferred← citeshttps://doi.org/10.1038/npre.2010.4898.1openalex-snapshot
DNA^+Pro^: an Improved Progressive Multiple Sequence Alignment Algorithm for Evolutionary Analysis Using Combined DNA-Protein Sequences
inferred← citeshttps://doi.org/10.1038/npre.2011.6730.1openalex-snapshot
Accurate Reconstruction of Molecular Phylogenies for Proteins Using Codon and Amino Acid Unified Sequence Alignments (CAUSA)
inferred← citeshttps://doi.org/10.1038/s41467-025-63747-xopenalex-snapshot
Forward and reverse genomic screens enhance the understanding of phenotypic variation in a large Chinese rhesus macaque cohort
inferred← citeshttps://doi.org/10.1038/s41586-025-09205-6openalex-snapshot
The role of metabolism in shaping enzyme structures over 400 million years
inferred← citeshttps://doi.org/10.1038/s41598-017-08995-8openalex-snapshot
Mitogenome Sequencing in the Genus Camelus Reveals Evidence for Purifying Selection and Long-term Divergence between Wild and Domestic Bactrian Camels
inferred← citeshttps://doi.org/10.1038/s41598-018-33049-yopenalex-snapshot
Genetic conflicts with Plasmodium parasites and functional constraints shape the evolution of erythrocyte cytoskeletal proteins
inferred← citeshttps://doi.org/10.1038/s41598-018-34984-6openalex-snapshot
Tracing whale myoglobin evolution by resurrecting ancient proteins
inferred← citeshttps://doi.org/10.1038/s41598-018-36428-7openalex-snapshot
Relation between mitochondrial DNA hyperdiversity, mutation rate and mitochondrial genome evolution in Melarhaphe neritoides (Gastropoda: Littorinidae) and other Caenogastropoda
inferred← citeshttps://doi.org/10.1038/s41598-019-41420-wopenalex-snapshot
New insights into the origin and evolution of α-amylase genes in green plants
inferred← citeshttps://doi.org/10.1038/s41598-022-18407-1openalex-snapshot
Mitogenome selection in the evolution of key ecological strategies in the ancient hexapod class Collembola
inferred← citeshttps://doi.org/10.1038/s41598-024-54296-2openalex-snapshot
Ancient reindeer mitogenomes reveal island-hopping colonisation of the Arctic archipelagos
inferred← citeshttps://doi.org/10.1038/s42003-019-0306-9openalex-snapshot
Mechanistic insights into the evolution of DUF26-containing proteins in land plants
inferred← citeshttps://doi.org/10.1038/s42003-022-03003-wopenalex-snapshot
Elevated mutation rates underlie the evolution of the aquatic plant family Podostemaceae
inferred← citeshttps://doi.org/10.1042/bj20112090openalex-snapshot
The ligand specificity of the G-protein-coupled receptor GPR34
inferred← citeshttps://doi.org/10.1046/j.1365-2540.2001.00895.xopenalex-snapshot
Statistical tests of selective neutrality in the age of genomics
inferred← citeshttps://doi.org/10.1071/is15009openalex-snapshot
Phylogenetics and phylogeography of a long-legged harvestman (Arachnida : Opiliones) in the Brazilian Atlantic Rain Forest reveals poor dispersal, low diversity and extensive mitochondrial introgression
inferred← citeshttps://doi.org/10.1073/pnas.0408302101openalex-snapshot
Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants
inferred← citeshttps://doi.org/10.1073/pnas.0510251103openalex-snapshot
There is no universal molecular clock for invertebrates, but rate variation does not scale with body size
inferred← citeshttps://doi.org/10.1073/pnas.1007888107openalex-snapshot
Mutation rate is linked to diversification in birds
inferred← citeshttps://doi.org/10.1073/pnas.1204661109openalex-snapshot
Single mutation to a sex pheromone receptor provides adaptive specificity between closely related moth species
inferred← citeshttps://doi.org/10.1073/pnas.2219469120openalex-snapshot
Evolution and diversification of the ACT-like domain associated with plant basic helix–loop–helix transcription factors
inferred← citeshttps://doi.org/10.1073/pnas.95.15.8670openalex-snapshot
Antarctic fish hemoglobins: Evidence for adaptive evolution at subzero temperature
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