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Compositional Properties of Green-Plant Plastid Genomes

https://doi.org/10.1007/s00239-004-0086-8

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00175504openalex-snapshot

Chloroplast DNA codon use: Evidence for selection at the psb A locus based on tRNA availability

inferredcites →https://doi.org/10.1007/bf00336789openalex-snapshot

A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae)

inferredcites →https://doi.org/10.1007/pl00006256openalex-snapshot

Codon Usage Bias and tRNA Abundance in Drosophila

inferredcites →https://doi.org/10.1007/pl00006325openalex-snapshot

Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages

inferredcites →https://doi.org/10.1007/pl00006534openalex-snapshot

Two Aspects of DNA Base Composition: G+C Content and Translation-Coupled Deviation from Intra-Strand Rule of A=T and G=C

inferredcites →https://doi.org/10.1007/s00239-002-2430-1openalex-snapshot

The Role of Context-Dependent Mutations in Generating Compositional and Codon Usage Bias in Grass Chloroplast DNA

inferredcites →https://doi.org/10.1016/b978-1-4832-2734-4.50043-7openalex-snapshot

On the Evolution of Informational Macromolecules

inferredcites →https://doi.org/10.1016/c2013-0-11981-2openalex-snapshot

Evolving Genes and Proteins

inferredcites →https://doi.org/10.1016/s0021-9258(19)81068-2openalex-snapshot

Codon selection in yeast.

inferredcites →https://doi.org/10.1016/s0092-8674(02)00665-7openalex-snapshot

Microbial Minimalism

inferredcites →https://doi.org/10.1016/s0959-437x(98)80038-5openalex-snapshot

Translational selection and molecular evolution

inferredcites →https://doi.org/10.1038/182111a0openalex-snapshot

A Correlation between the Compositions of Deoxyribonucleic and Ribonucleic Acids

inferredcites →https://doi.org/10.1038/1831429a0openalex-snapshot

Heterogeneity in Deoxyribonucleic Acids: II. Dependence of the Density of Deoxyribonucleic Acids on Guanine–Cytosine Content

inferredcites →https://doi.org/10.1038/35048692openalex-snapshot

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

inferredcites →https://doi.org/10.1038/nature01183openalex-snapshot

Sequence and analysis of rice chromosome 4

inferredcites →https://doi.org/10.1038/nature01184openalex-snapshot

The genome sequence and structure of rice chromosome 1

inferredcites →https://doi.org/10.1073/pnas.162203299openalex-snapshot

The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum : Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants

inferredcites →https://doi.org/10.1073/pnas.48.4.582openalex-snapshot

ON THE GENETIC BASIS OF VARIATION AND HETEROGENEITY OF DNA BASE COMPOSITION

inferredcites →https://doi.org/10.1073/pnas.84.1.166openalex-snapshot

The guanine and cytosine content of genomic DNA and bacterial evolution.

inferredcites →https://doi.org/10.1073/pnas.85.8.2653openalex-snapshot

Directional mutation pressure and neutral molecular evolution.

inferredcites →https://doi.org/10.1073/pnas.96.18.10248openalex-snapshot

The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea : Insights into the architecture of ancestral chloroplast genomes

inferredcites →https://doi.org/10.1073/pnas.96.8.4482openalex-snapshot

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis , Drosophila , and Arabidopsis

inferredcites →https://doi.org/10.1093/bioinformatics/13.5.555openalex-snapshot

PAML: a program package for phylogenetic analysis by maximum likelihood

inferredcites →https://doi.org/10.1093/genetics/129.3.897openalex-snapshot

The selection-mutation-drift theory of synonymous codon usage.

inferredcites →https://doi.org/10.1093/genetics/136.3.927openalex-snapshot

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

inferredcites →https://doi.org/10.1093/nar/22.13.2437openalex-snapshot

Codon usage in Caenorhabditis elegans : delineation of translational selection and mutational biases

inferredcites →https://doi.org/10.1093/nar/25.24.4876openalex-snapshot

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

inferredcites →https://doi.org/10.1093/nar/28.1.292openalex-snapshot

Codon usage tabulated from international DNA sequence databases: status for the year 2000

inferredcites →https://doi.org/10.1093/nar/30.7.1585openalex-snapshot

A novel DNA polymerase homologous to Escherichia coli DNA polymerase I from a higher plant, rice (Oryza sativa L.)

inferredcites →https://doi.org/10.1093/nar/9.1.213-bopenalex-snapshot

Codon catalog usage is a genome strategy modulated for gene expressivity

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003979openalex-snapshot

The Complete Mitochondrial DNA Sequence of Mesostigma viride Identifies This Green Alga as the Earliest Green Plant Divergence and Predicts a Highly Compact Mitochondrial Genome in the Ancestor of All Green Plants

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025991openalex-snapshot

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040335openalex-snapshot

Codon usage and tRNA content in unicellular and multicellular organisms.

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040525openalex-snapshot

"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons.

inferredcites →https://doi.org/10.1098/rstb.2002.1176openalex-snapshot

Evolution of the chloroplast genome

inferredcites →https://doi.org/10.1104/pp.010713openalex-snapshot

Genome Properties of the Diatom Phaeodactylum tricornutum

inferredcites →https://doi.org/10.1105/tpc.006155openalex-snapshot

TheChlamydomonas reinhardtiiPlastid Chromosome

inferredcites →https://doi.org/10.1105/tpc.010009openalex-snapshot

Nuclear Genes That Encode Mitochondrial Proteins for DNA and RNA Metabolism Are Clustered in the Arabidopsis Genome[W]

inferredcites →https://doi.org/10.1105/tpc.11.9.1717openalex-snapshot

The Complete Mitochondrial DNA Sequences of Nephroselmis olivacea and Pedinomonas minor: Two Radically Different Evolutionary Patterns within Green Algae

inferredcites →https://doi.org/10.1146/annurev.genet.33.1.351openalex-snapshot

Mitochondrial Genome Evolution and the Origin of Eukaryotes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4480340openalex-extracted

Phylogenetic Diversity of Allspice (Pimenta Dioica) Collections from Tanzania Using Chloroplast (Cp) Rbcl Gene

inferred← citeshttps://doi.org/10.1007/s00239-008-9095-3openalex-snapshot

Multilevel Control of Organelle DNA Sequence Length in Plants

inferred← citeshttps://doi.org/10.1007/s00239-020-09987-5openalex-snapshot

Correlation Analysis Reveals an Important Role of GC Content in Accumulation of Deletion Mutations in the Coding Region of Angiosperm Plastomes

inferred← citeshttps://doi.org/10.1007/s11103-009-9545-3openalex-snapshot

Unparalleled GC content in the plastid DNA of Selaginella

inferred← citeshttps://doi.org/10.1016/j.jplph.2019.153081openalex-snapshot

Reduced C-to-U RNA editing rates might play a regulatory role in stress response of Arabidopsis

inferred← citeshttps://doi.org/10.1093/gbe/evv125openalex-snapshot

Evolutionary Stasis in Cycad Plastomes and the First Case of Plastome GC-Biased Gene Conversion

inferred← citeshttps://doi.org/10.1093/molbev/msac222openalex-snapshot

Emergence of Novel RNA-Editing Sites by Changes in the Binding Affinity of a Conserved PPR Protein

inferred← citeshttps://doi.org/10.1093/molbev/msm245openalex-snapshot

Mitochondrial Genome of the Colorless Green Alga Polytomella capuana: A Linear Molecule with an Unprecedented GC Content

inferred← citeshttps://doi.org/10.1093/molbev/mst254openalex-snapshot

Reduced Nuclear Genomes Maintain High Gene Transcription Levels

inferred← citeshttps://doi.org/10.1104/pp.19.00922openalex-snapshot

Establishment of a Heterologous RNA Editing Event in Chloroplasts

inferred← citeshttps://doi.org/10.1155/2022/3909596openalex-snapshot

Comparative Plastome Analysis of Three Amaryllidaceae Subfamilies: Insights into Variation of Genome Characteristics, Phylogeny, and Adaptive Evolution

inferred← citeshttps://doi.org/10.1371/journal.pone.0023624openalex-snapshot

The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape

inferred← citeshttps://doi.org/10.1371/journal.pone.0023980openalex-snapshot

Chloroplast Genome Variation in Upland and Lowland Switchgrass

inferred← citeshttps://doi.org/10.14719/pst.2021.8.3.1133openalex-snapshot

Phylogenetic study of mangrove associate grass Myriostachya wightiana (Nees ex Steud.) Hook. f. using rbcL gene sequence

inferred← citeshttps://doi.org/10.3389/fgene.2012.00175openalex-snapshot

Updating Our View of Organelle Genome Nucleotide Landscape

inferred← citeshttps://doi.org/10.3389/fpls.2019.00460openalex-snapshot

Phylogeny of Chinese Allium Species in Section Daghestanica and Adaptive Evolution of Allium (Amaryllidaceae, Allioideae) Species Revealed by the Chloroplast Complete Genome

inferred← citeshttps://doi.org/10.3390/ijms22020641openalex-snapshot

Plastid Genomes of the Early Vascular Plant Genus Selaginella Have Unusual Direct Repeat Structures and Drastically Reduced Gene Numbers

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