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The selection-mutation-drift theory of synonymous codon usage.
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/j.1460-2075.1982.tb01240.xopenalex-snapshot
Is there proofreading during polypeptide synthesis?
inferredcites →https://doi.org/10.1002/j.1460-2075.1988.tb03282.xopenalex-snapshot
Messenger RNA recognition in Escherichia coli: a possible second site of interaction with 16S ribosomal RNA.
inferredcites →https://doi.org/10.1007/978-94-009-4097-0_11openalex-snapshot
Kinetic costs of accuracy in translation
inferredcites →https://doi.org/10.1007/978-94-009-4097-0_5openalex-snapshot
The accuracy of mRNA—tRNA recognition
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The secret life of the ribosome
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Suboptimal growth with hyper-accurate ribosomes
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An evolutionary perspective on synonymous codon usage in unicellular organisms
inferredcites →https://doi.org/10.1007/bf02102321openalex-snapshot
The protein burden oflac operon products
inferredcites →https://doi.org/10.1007/bf02109476openalex-snapshot
Switches in species-specific codon preferences: The influence of mutation biases
inferredcites →https://doi.org/10.1007/bf02134132openalex-snapshot
Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons
inferredcites →https://doi.org/10.1016/0014-5793(80)81155-0openalex-snapshot
Polypeptide elongation and tRNA cycling in Escherichia coli: A dynamic approach
inferredcites →https://doi.org/10.1016/0014-5793(88)81362-0openalex-snapshot
Is translation inhibited by noncognate ternary complexes?
inferredcites →https://doi.org/10.1016/0022-2836(84)90027-5openalex-snapshot
Translation is a non-uniform process
inferredcites →https://doi.org/10.1016/0022-2836(89)90260-xopenalex-snapshot
Codon usage determines translation rate in Escherichia coli
inferredcites →https://doi.org/10.1016/0022-2836(90)90074-vopenalex-snapshot
How many EF-Tu molecules participate in aminoacyl-tRNA binding and peptide bond formation in Escherichia coli translation?
inferredcites →https://doi.org/10.1016/0092-8674(78)90312-4openalex-snapshot
Patterns of protein synthesis in E. coli: a catalog of the amount of 140 individual proteins at different growth rates
inferredcites →https://doi.org/10.1016/0160-9327(84)90064-4openalex-snapshot
The neutral theory of molecular evolution
inferredcites →https://doi.org/10.1016/0300-9084(88)90119-8openalex-snapshot
Escherichia coli and Salmonella typhimurium: Cellular and molecular biology
inferredcites →https://doi.org/10.1016/0300-9084(89)90027-8openalex-snapshot
The maximum rate of gene expression is dependent in the downstream context of unfavourable codons
inferredcites →https://doi.org/10.1016/0304-4173(84)90003-xopenalex-snapshot
The UNC operon nucleotide sequence, regulation and structure of ATP-synthase
inferredcites →https://doi.org/10.1016/b978-0-12-274162-3.50013-xopenalex-snapshot
BACILLUS SUBTILIS GENE SEQUENCES
inferredcites →https://doi.org/10.1016/b978-0-409-90027-9.50010-9openalex-snapshot
The Instability of Messenger RNA in Bacteria
inferredcites →https://doi.org/10.1016/b978-0-409-90027-9.50014-6openalex-snapshot
Biased Codon Usage: An Exploration of Its Role in Optimization of Translation
inferredcites →https://doi.org/10.1016/s0021-9258(19)35394-3openalex-snapshot
Transcription attenuation.
inferredcites →https://doi.org/10.1016/s0021-9258(19)68511-xopenalex-snapshot
Model for messenger RNA translation during amino acid starvation applied to the calculation of protein synthetic error rates.
inferredcites →https://doi.org/10.1016/s0022-2836(86)80005-5openalex-snapshot
Constraints on codon context in Escherichia coli genes their possible role in modulating the efficiency of translation
inferredcites →https://doi.org/10.1016/s0022-5193(05)80011-6openalex-snapshot
Codon discrimination due to presence of abundant non-cognate competitive tRNA
inferredcites →https://doi.org/10.1016/s0022-5193(86)80020-0openalex-snapshot
Effect of distribution of unfavourable codons on the maximum rate of gene expression by an heterologous organism
inferredcites →https://doi.org/10.1016/s0022-5193(87)80175-3openalex-snapshot
Theoretical modelling of protein synthesis
inferredcites →https://doi.org/10.1016/s0022-5193(87)80251-5openalex-snapshot
Translation rate modification by preferential codon usage: Intragenic position effects
inferredcites →https://doi.org/10.1016/s0022-5193(88)80024-9openalex-snapshot
Codon usage and intragenic position
inferredcites →https://doi.org/10.1017/s0016672300010156openalex-snapshot
The effect of linkage on limits to artificial selection
inferredcites →https://doi.org/10.1017/s0016672300024587openalex-snapshot
Fitness as a function of β-galactosidase activity inEscherichia coli
inferredcites →https://doi.org/10.1017/s001667230800949xopenalex-snapshot
The effect of linkage on limits to artificial selection
inferredcites →https://doi.org/10.1038/325728a0openalex-snapshot
Coevolution of codon usage and transfer RNA abundance
inferredcites →https://doi.org/10.1038/scientificamerican1179-98openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1046/j.1420-9101.1988.1010015.xopenalex-snapshot
Are codon usage patterns in unicellular organisms determined by selection‐mutation balance?
inferredcites →https://doi.org/10.1073/pnas.78.9.5773openalex-snapshot
Possibility of extensive neutral evolution under stabilizing selection with special reference to nonrandom usage of synonymous codons.
inferredcites →https://doi.org/10.1073/pnas.80.3.687openalex-snapshot
Evidence for use of rare codons in the dnaG gene and other regulatory genes of Escherichia coli.
inferredcites →https://doi.org/10.1073/pnas.83.21.8127openalex-snapshot
Transcription attenuation in Salmonella typhimurium: the significance of rare leucine codons in the leu leader.
inferredcites →https://doi.org/10.1073/pnas.84.17.6225openalex-snapshot
Confidence interval for the number of selectively neutral amino acid polymorphisms.
inferredcites →https://doi.org/10.1080/07391102.1985.10508442openalex-snapshot
Delineation of Coding Areas in DNA Sequences Through Assignment of Codon Probabilities
inferredcites →https://doi.org/10.1093/genetics/16.2.97openalex-snapshot
EVOLUTION IN MENDELIAN POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/16.3.290openalex-snapshot
EVOLUTION IN MENDELIAN POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/78.2.737openalex-snapshot
THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION
inferredcites →https://doi.org/10.1093/genetics/99.1.1openalex-snapshot
PERIODIC SELECTION, INFECTIOUS GENE EXCHANGE AND THE GENETIC STRUCTURE OF E. COLI POPULATIONS
inferredcites →https://doi.org/10.1093/nar/10.22.7055openalex-snapshot
Codon usage in bacteria: correlation with gene expressivity
inferredcites →https://doi.org/10.1093/nar/12.17.6663openalex-snapshot
Codon usage can affect efficiency of translation of genes inEscherichia coli
inferredcites →https://doi.org/10.1093/nar/13.11.4113openalex-snapshot
Codon-defined ribosomal pausing inEscherichia colidetected by using thepyrEattenuator to probe the coupling between transcription and translation
inferredcites →https://doi.org/10.1093/nar/14.19.7737openalex-snapshot
Codon usage in regulatory genes in Escherichia coli does not reflect selection for ‘rare’ codons
inferredcites →https://doi.org/10.1093/nar/15.19.8023openalex-snapshot
Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases
inferredcites →https://doi.org/10.1093/nar/17.5.1839openalex-snapshot
Codon usage and secondary structure of MS2 phage RNA
inferredcites →https://doi.org/10.1093/nar/17.8.3179openalex-snapshot
Effect of nucleotide sequences directly downstream from the AUG on the expression of bovine somatotropin inE.coli
inferredcites →https://doi.org/10.1093/nar/18.10.2869openalex-snapshot
The effect of context on synonymous codon usage in genes with low codon usage bias
inferredcites →https://doi.org/10.1093/nar/18.7.1719openalex-snapshot
The initiation of translation inE.coli: apparent base pairing between the 16srRNA and downstream sequences of the mRNA
inferredcites →https://doi.org/10.1093/nar/7.7.2073openalex-snapshot
Secondary structure of MS2 phage RNA and bias in code word usage
inferredcites →https://doi.org/10.1093/nar/8.1.197-copenalex-snapshot
Codon catalog usage and the genome hypothesis
inferredcites →https://doi.org/10.1093/nar/9.1.213-bopenalex-snapshot
Codon catalog usage is a genome strategy modulated for gene expressivity
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040335openalex-snapshot
Codon usage and tRNA content in unicellular and multicellular organisms.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040443openalex-snapshot
The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040525openalex-snapshot
"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons.
inferredcites →https://doi.org/10.1128/jb.144.1.114-123.1980openalex-snapshot
Are growth rates of Escherichia coli in batch cultures limited by respiration?
inferredcites →https://doi.org/10.1128/jb.169.12.5668-5677.1987openalex-snapshot
Role of codon choice in the leader region of the ilvGMEDA operon of Serratia marcescens
inferredcites →https://doi.org/10.1128/mmbr.47.1.1-45.1983openalex-snapshot
Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles
inferredcites →https://doi.org/10.1128/mmbr.54.2.198-210.1990openalex-snapshot
Codon preferences in free-living microorganisms
inferredcites →https://doi.org/10.1146/annurev.bi.57.070188.001215openalex-snapshot
POSTTRANSCRIPTIONAL REGULATORY MECHANISMS IN ESCHERICHIA COLI
inferredcites →https://doi.org/10.2307/1529706openalex-snapshot
An Introduction to Population Genetics Theory
inferredcites →https://doi.org/10.2307/2289210openalex-snapshot
The Neutral Theory of Molecular Evolution.
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Genome‐wide comparison of codon usage dynamics in mitochondrial genes across different species of amphibian genus Bombina
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Nucleotide and codon usage biases involved in the evolution of African swine fever virus: A comparative genomics analysis
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Comparing expression level‐dependent features in codon usage with protein abundance: An analysis of ‘predictive proteomics’
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Synonymous codon usage in Kluyveromyces lactis
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An analysis of codon bias in six red yeast species
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Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae
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Specific correlations between relative synonymous codon usage and protein secondary structure
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Red Queen Dynamics of Protein Translation
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Development of Neutral and Nearly Neutral Theories
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Computational Methods of Identification of Pseudogenes Based on Functionality: Entropy and GC Content
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Protein Isoelectric Point and Helicobacter pylori
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Hidden Silent Codes in Viral Genomes
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Nucleotide Substitution Models and Evolutionary Distances
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Synonymous substitution-rate constants in Escherichia coli and Salmonella typhimurium and their relationship to gene expression and selection pressure
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Mutational bias is the driving force for shaping the synonymous codon usage pattern of alternatively spliced genes in rice (Oryza sativa L.)
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Complete mitochondrial genome sequence of Nannostomus eques and comparative analysis with Nannostomus beckfordi
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Hierarchical evolution of the proteobacterial essential chaperone SecB reveals non-neutral synonymous evolution under extreme purifying selection
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Codon usage of HIV regulatory genes is not determined by nucleotide composition
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Genome polarity of RNA viruses reflects the different evolutionary pressures shaping codon usage
inferred← citeshttps://doi.org/10.1007/s00705-018-4063-8openalex-snapshot
A detailed analysis of synonymous codon usage in human bocavirus
inferred← citeshttps://doi.org/10.1007/s00705-020-04890-2openalex-snapshot
Composition, codon usage pattern, protein properties, and influencing factors in the genomes of members of the family Anelloviridae
inferred← citeshttps://doi.org/10.1007/s10068-017-0285-xopenalex-snapshot
Compositional bias coupled with selection and mutation pressure drives codon usage in Brassica campestris genes
inferred← citeshttps://doi.org/10.1007/s10528-020-10000-3openalex-snapshot
A Crosstalk on Codon Usage in Genes Associated with Leukemia
inferred← citeshttps://doi.org/10.1007/s10528-025-11053-yopenalex-snapshot
Comprehensive Codon Usage Analysis Across Diverse Plant Lineages
inferred← citeshttps://doi.org/10.1007/s10529-014-1592-4openalex-snapshot
Mammalian expression levels of cellulase and xylanase genes optimised by human codon usage are not necessarily higher than those optimised by the extremely biased approach
inferred← citeshttps://doi.org/10.1007/s10658-023-02641-yopenalex-snapshot
Adaption of tobacco rattle virus to its solanaceous hosts is related to the codon usage bias of the hosts and that of the viral 16 K gene
inferred← citeshttps://doi.org/10.1007/s10709-016-9945-7openalex-snapshot
Complete mitochondrial genome from South American catfish Pseudoplatystoma reticulatum (Eigenmann & Eigenmann) and its impact in Siluriformes phylogenetic tree
inferred← citeshttps://doi.org/10.1007/s10709-019-00059-1openalex-snapshot
Comparative mitogenomic and phylogenetic analysis of Apalone spinifera and Apalone ferox (Testudines: Trionychidae)
inferred← citeshttps://doi.org/10.1007/s10709-019-00067-1openalex-snapshot
Compositional properties and codon usage pattern of mitochondrial ATP gene in different classes of Arthropoda
inferred← citeshttps://doi.org/10.1007/s10722-023-01667-9openalex-snapshot
Comprehensive analysis of the COBRA-like (COBL) gene family through whole-genome analysis of land plants
inferred← citeshttps://doi.org/10.1007/s10722-025-02473-1openalex-snapshot
Codon usage bias analysis of self-incompatibility genes BrSRK, BrSLG, and BrSP11/BrSCR in Brassica rapa reveals insights into their coevolution
inferred← citeshttps://doi.org/10.1007/s10725-020-00677-2openalex-snapshot
Molecular evolution and genome-wide analysis of the SBP-box family in cucumber (Cucumis sativas)
inferred← citeshttps://doi.org/10.1007/s11033-009-9521-7openalex-snapshot
Analysis of synonymous codon usage in Zea mays
inferred← citeshttps://doi.org/10.1007/s11033-022-07200-yopenalex-snapshot
Association between the single nucleotide variants of the mitochondrial cytochrome B gene (MT-CYB) and the male infertility
inferred← citeshttps://doi.org/10.1007/s11103-006-0041-8openalex-snapshot
Comparative analysis of expressed sequences reveals a conserved pattern of optimal codon usage in plants
inferred← citeshttps://doi.org/10.1007/s11259-013-9564-zopenalex-snapshot
The effects of the codon usage and translation speed on protein folding of 3Dpol of foot-and-mouth disease virus
inferred← citeshttps://doi.org/10.1007/s11262-008-0296-zopenalex-snapshot
Analysis of synonymous codon usage in classical swine fever virus
inferred← citeshttps://doi.org/10.1007/s11262-010-0568-2openalex-snapshot
Genus specific evolution of codon usage and nucleotide compositional traits of poxviruses
inferred← citeshttps://doi.org/10.1007/s11262-012-0847-1openalex-snapshot
A comparative analysis on the synonymous codon usage pattern in viral functional genes and their translational initiation region of ASFV
inferred← citeshttps://doi.org/10.1007/s11538-006-9147-zopenalex-snapshot
An Analytical Model of Gene Evolution with 9 Mutation Parameters: An Application to the Amino Acids Coded by the Common Circular Code
inferred← citeshttps://doi.org/10.1007/s11538-025-01587-yopenalex-snapshot
Availability of Charged tRNAs Drives Maximal Protein Synthesis at Intermediate Levels of Codon Usage Bias
inferred← citeshttps://doi.org/10.1007/s11738-022-03453-zopenalex-snapshot
Codon usage bias and evolution analysis in the mitochondrial genome of Mesona chinensis Benth
inferred← citeshttps://doi.org/10.1007/s11802-021-4739-7openalex-snapshot
Genome-Wide Patterns of Codon Usage in the Pacific Oyster Genome
inferred← citeshttps://doi.org/10.1007/s12035-020-02068-0openalex-snapshot
Compositional Features and Codon Usage Pattern of Genes Associated with Anxiety in Human
inferred← citeshttps://doi.org/10.1007/s12041-014-0429-1openalex-snapshot
Cotranslational protein folding reveals the selective use of synonymous codons along the coding sequence of a low expression gene
inferred← citeshttps://doi.org/10.1007/s12041-015-0512-2openalex-snapshot
Nucleotide composition bias and codon usage trends of gene populations in Mycoplasma capricolum subsp. capricolum and M. agalactiae
inferred← citeshttps://doi.org/10.1007/s12041-018-0892-1openalex-snapshot
Codon usage vis-a-vis start and stop codon context analysis of three dicot species
inferred← citeshttps://doi.org/10.1007/s12041-021-01271-9openalex-snapshot
Genomewide comparative analysis of codon usage bias in three sequenced Jatropha curcas
inferred← citeshttps://doi.org/10.1007/s12041-023-01434-wopenalex-snapshot
Codon usage bias analysis of mitochondrial protein-coding genes in 12 species of Candida
inferred← citeshttps://doi.org/10.1007/s12042-013-9123-3openalex-snapshot
Nucleotide Composition of the Nelumbo nucifera Genome
inferred← citeshttps://doi.org/10.1007/s12298-024-01421-0openalex-snapshot
Comparative analysis of codon usage patterns in the chloroplast genomes of nine forage legumes
inferred← citeshttps://doi.org/10.1007/s13258-015-0381-3openalex-snapshot
Prediction of gene expression and codon usage in human parasitic helminths
inferred← citeshttps://doi.org/10.1007/s13258-017-0519-6openalex-snapshot
Genome-wide analysis of codon usage bias patterns in an enterotoxigenic Escherichia coli F18 strain
inferred← citeshttps://doi.org/10.1007/s13562-018-0480-8openalex-snapshot
Cross talk between energy cost and expression of Methyl Jasmonate-regulated genes: from DNA to protein
inferred← citeshttps://doi.org/10.1007/s40415-023-00874-zopenalex-snapshot
Complete chloroplast genome sequence of Gynostemma guangxiense: genome structure, codon usage bias, and phylogenetic relationships in Gynostemma (Cucurbitaceae)
inferred← citeshttps://doi.org/10.1007/s42994-020-00030-1openalex-snapshot
Genome recoding strategies to improve cellular properties: mechanisms and advances
inferred← citeshttps://doi.org/10.1016/b978-0-12-822457-1.00017-0openalex-snapshot
The Chlamydomonas nuclear genome
inferred← citeshttps://doi.org/10.1016/j.actatropica.2017.06.006openalex-snapshot
Analysis of synonymous codon usage in Zika virus
inferred← citeshttps://doi.org/10.1016/j.actatropica.2017.07.025openalex-snapshot
New insights into the factors affecting synonymous codon usage in human infecting Plasmodium species
inferred← citeshttps://doi.org/10.1016/j.asoc.2021.108172openalex-snapshot
Evolutionary algorithms for modeling non-equilibrium population
inferred← citeshttps://doi.org/10.1016/j.aspen.2024.102276openalex-snapshot
Comparative analysis of codon usage patterns of venom gland-specific honeybee-infecting viruses in solitary hunting and social wasps
inferred← citeshttps://doi.org/10.1016/j.bbaexp.2005.02.004openalex-snapshot
Translational effects of differential codon usage among intragenic domains of new genes in Drosophila
inferred← citeshttps://doi.org/10.1016/j.bbrc.2006.03.124openalex-snapshot
Relation between mRNA expression and sequence information in Desulfovibrio vulgaris: Combinatorial contributions of upstream regulatory motifs and coding sequence features to variations in mRNA abundance
inferred← citeshttps://doi.org/10.1016/j.bbrc.2007.01.038openalex-snapshot
Reinvestigating the codon and amino acid usage of S. cerevisiae genome: A new insight from protein secondary structure analysis
inferred← citeshttps://doi.org/10.1016/j.bbrc.2007.05.043openalex-snapshot
The effects of differential gene expression on coding sequence features: Analysis by one-way ANOVA
inferred← citeshttps://doi.org/10.1016/j.bbrc.2023.02.001openalex-snapshot
Evolution of codon and amino acid usage in bacterial protein toxins
inferred← citeshttps://doi.org/10.1016/j.bcab.2023.102810openalex-snapshot
Comprehensive analysis of codon usage pattern in Eisenia fetida and its correlation with gene expression
inferred← citeshttps://doi.org/10.1016/j.bihy.2008.12.003openalex-snapshot
A novel approach for predicting the evolutionary time of acquisition of foreign genes by bacteria: Application of codon usage analyses
inferred← citeshttps://doi.org/10.1016/j.biocel.2015.03.011openalex-snapshot
Decoding mechanisms by which silent codon changes influence protein biogenesis and function
inferred← citeshttps://doi.org/10.1016/j.biosystems.2006.09.039openalex-snapshot
Comparison of codon usage and tRNAs in mitochondrial genomes of Candida species
inferred← citeshttps://doi.org/10.1016/j.biosystems.2022.104734openalex-snapshot
Enhanced effective codon numbers to understand codon usage bias
inferred← citeshttps://doi.org/10.1016/j.bse.2015.04.013openalex-snapshot
Two novel mitogenomes of Dipodidae species and phylogeny of Rodentia inferred from the complete mitogenomes
inferred← citeshttps://doi.org/10.1016/j.cell.2013.05.049openalex-snapshot
Rate-Limiting Steps in Yeast Protein Translation
inferred← citeshttps://doi.org/10.1016/j.celrep.2014.08.012openalex-snapshot
Local Correlations in Codon Preferences Do Not Support a Model of tRNA Recycling
inferred← citeshttps://doi.org/10.1016/j.celrep.2016.01.043openalex-snapshot
Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2005.11.001openalex-snapshot
Identification of circular codes in bacterial genomes and their use in a factorization method for retrieving the reading frames of genes
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2017.05.005openalex-snapshot
Codon usage bias and its influencing factors for Y-linked genes in human
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2019.107119openalex-snapshot
Compositional features and codon usage pattern of TP63 gene
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2019.103449openalex-snapshot
Exploring the codon patterns between CCD and NCED genes among different plant species
inferred← citeshttps://doi.org/10.1016/j.cub.2003.12.055openalex-snapshot
Selection on Codon Usage in Drosophila americana
inferred← citeshttps://doi.org/10.1016/j.cub.2006.08.067openalex-snapshot
Selection Intensity on Preferred Codons Correlates with Overall Codon Usage Bias in Caenorhabditis remanei
inferred← citeshttps://doi.org/10.1016/j.cub.2020.12.045openalex-snapshot
Deeply Altered Genome Architecture in the Endoparasitic Flowering Plant Sapria himalayana Griff. (Rafflesiaceae)
inferred← citeshttps://doi.org/10.1016/j.drup.2012.03.005openalex-snapshot
Evolution of antibiotic resistance at non-lethal drug concentrations
inferred← citeshttps://doi.org/10.1016/j.egg.2017.11.002openalex-snapshot
The complex pattern of codon usage evolution in the family Comamonadaceae
inferred← citeshttps://doi.org/10.1016/j.febslet.2006.06.014openalex-snapshot
Temperature adaptation of synonymous codon usage in different functional categories of genes: A comparative study between homologous genes of Methanococcus jannaschii and Methanococcus maripaludis
inferred← citeshttps://doi.org/10.1016/j.febslet.2007.11.054openalex-snapshot
On the origin of synonymous codon usage divergence between thermophilic and mesophilic prokaryotes
inferred← citeshttps://doi.org/10.1016/j.febslet.2015.08.033openalex-snapshot
Analysis of amino acid and codon usage inParamecium bursaria
inferred← citeshttps://doi.org/10.1016/j.funbio.2025.101715openalex-snapshot
Comparative analysis of mitochondrial genomes and evolutionary characteristics of five Alternaria species causing potato leaf spot diseases
inferred← citeshttps://doi.org/10.1016/j.gene.2004.11.019openalex-snapshot
Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes
inferred← citeshttps://doi.org/10.1016/j.gene.2006.05.033openalex-snapshot
Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes
inferred← citeshttps://doi.org/10.1016/j.gene.2006.08.003openalex-snapshot
Homologous recombination and the pattern of nucleotide substitution in Ehrlichia ruminantium
inferred← citeshttps://doi.org/10.1016/j.gene.2006.09.004openalex-snapshot
Error minimization explains the codon usage of highly expressed genes in Escherichia coli
inferred← citeshttps://doi.org/10.1016/j.gene.2007.05.011openalex-snapshot
Single Nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas
inferred← citeshttps://doi.org/10.1016/j.gene.2007.05.027openalex-snapshot
Nature of selective constraints on synonymous codon usage of rice differs in GC-poor and GC-rich genes
inferred← citeshttps://doi.org/10.1016/j.gene.2007.09.020openalex-snapshot
Amino acid and codon usage profiles: Adaptive changes in the frequency of amino acids and codons
inferred← citeshttps://doi.org/10.1016/j.gene.2010.11.010openalex-snapshot
Selected codon usage bias in members of the class Mollicutes
inferred← citeshttps://doi.org/10.1016/j.gene.2012.06.027openalex-snapshot
Translational selection on codon usage in the genus Aspergillus
inferred← citeshttps://doi.org/10.1016/j.gene.2012.10.024openalex-snapshot
Comparative genome sequence analysis of Sulfolobus acidocaldarius and 9 other isolates of its genus for factors influencing codon and amino acid usage
inferred← citeshttps://doi.org/10.1016/j.gene.2013.11.098openalex-snapshot
Constraint on di-nucleotides by codon usage bias in bacterial genomes
inferred← citeshttps://doi.org/10.1016/j.gene.2016.04.005openalex-snapshot
Codon usage trend in mitochondrial CYB gene
inferred← citeshttps://doi.org/10.1016/j.gene.2016.05.041openalex-snapshot
Old genes experience stronger translational selection than young genes
inferred← citeshttps://doi.org/10.1016/j.gene.2017.03.016openalex-snapshot
New insights into the codon usage patterns of the bactericidal/permeability-increasing (BPI) gene across nine species
inferred← citeshttps://doi.org/10.1016/j.gene.2019.01.031openalex-snapshot
The fitness consequences of synonymous mutations in Escherichia coli: Experimental evidence for a pleiotropic effect of translational selection
inferred← citeshttps://doi.org/10.1016/j.gene.2020.144640openalex-snapshot
The combined influence of codon composition and tRNA copy number regulates translational efficiency by influencing synonymous nucleotide substitution
inferred← citeshttps://doi.org/10.1016/j.gene.2020.144762openalex-snapshot
Analysis of compositional properties and codon usage bias of mitochondrial CYB gene in anura, urodela and gymnophiona
inferred← citeshttps://doi.org/10.1016/j.gene.2021.145462openalex-snapshot
Understanding the codon usage patterns of mitochondrial CO genes among Amphibians
inferred← citeshttps://doi.org/10.1016/j.gene.2022.146999openalex-snapshot
Comparative analysis of codon usage of mitochondrial genomes provides evolutionary insights into reptiles
inferred← citeshttps://doi.org/10.1016/j.gene.2024.149031openalex-snapshot
De novo assembly and characterization of the complete mitochondrial genome of Phellodendron amurense reveals three repeat‐mediated recombination
inferred← citeshttps://doi.org/10.1016/j.genrep.2016.12.006openalex-snapshot
Characterization of the complete chloroplast genome of alfalfa (Medicago sativa) (Leguminosae)
inferred← citeshttps://doi.org/10.1016/j.genrep.2026.102574openalex-snapshot
Draft genome of the freshwater unionid Lamellidens corrianus provides insights into compositional bias and synonymous codon usage patterns
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2019.01.200openalex-snapshot
Unusual AT-skew of Sinorhodeus microlepis mitogenome provides new insights into mitogenome features and phylogenetic implications of bitterling fishes
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2021.05.017openalex-snapshot
Codon usage patterns and evolution of HSP60 in birds
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.147063openalex-snapshot
Large-scale comparative analysis of blowfly mitogenomes, with an emphasis on Calliphorinae (Diptera: Calliphoridae), provides evolutionary insights into mitochondrial DNA structure, gene rearrangements, and inter- and intra-subfamilial relationships among blowflies
inferred← citeshttps://doi.org/10.1016/j.jmb.2015.09.003openalex-snapshot
Overcoming Challenges in Engineering the Genetic Code
inferred← citeshttps://doi.org/10.1016/j.jtbi.2005.04.007openalex-snapshot
Optimality of codon usage in Escherichia coli due to load minimization
inferred← citeshttps://doi.org/10.1016/j.jtbi.2005.08.007openalex-snapshot
A model of protein translation including codon bias, nonsense errors, and ribosome recycling
inferred← citeshttps://doi.org/10.1016/j.jtbi.2005.10.020openalex-snapshot
Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites
inferred← citeshttps://doi.org/10.1016/j.jtbi.2005.12.004openalex-snapshot
Exploring synonymous codon usage preferences of disulfide-bonded and non-disulfide bonded cysteines in the E. coli genome
inferred← citeshttps://doi.org/10.1016/j.jtbi.2008.05.010openalex-snapshot
Optimizing the codon usage of synthetic gene with QPSO algorithm
inferred← citeshttps://doi.org/10.1016/j.jtbi.2008.07.028openalex-snapshot
A stochastic model of gene evolution with chaotic mutations
inferred← citeshttps://doi.org/10.1016/j.jtbi.2011.07.021openalex-snapshot
On parameters of the human genome
inferred← citeshttps://doi.org/10.1016/j.jtbi.2013.06.006openalex-snapshot
Analysis of codon use features of stearoyl-acyl carrier protein desaturase gene in Camellia sinensis
inferred← citeshttps://doi.org/10.1016/j.jtbi.2014.03.022openalex-snapshot
System analysis of synonymous codon usage biases in archaeal virus genomes
inferred← citeshttps://doi.org/10.1016/j.jtbi.2014.10.023openalex-snapshot
Effect of drift, selection and recombination on the equilibrium frequency of deleterious mutations
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