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Distribution and Evolution of Pseudogenes, Gene Losses, and a Gene Rearrangement in the Plastid Genome of the Nonphotosynthetic Liverwort, Aneura mirabilis (Metzgeriales, Jungermanniopsida)

https://doi.org/10.1007/s00239-008-9133-1
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Photosynthetic evolution in parasitic plants: insight from the chloroplast genome
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Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants.
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The Role of Nucleus- and Chloroplast-Encoded Factors in the Synthesis of the Photosynthetic Apparatus
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The Role of Nucleus- and Chloroplast-Encoded Factors in the Synthesis of the Photosynthetic Apparatus
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Molecular Phylogenetic and Evolutionary Studies of Parasitic Plants
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A divergent plastid genome inConopholis americana, an achlorophyllous parasitic plant
inferredcites →https://doi.org/10.1007/bf00040588openalex-snapshot
Functional loss of all ndh genes in an otherwise relatively unaltered plastid genome of the holoparasitic flowering plant Cuscuta reflexa
inferredcites →https://doi.org/10.1007/pl00008690openalex-snapshot
Disruption of plastid-encoded RNA polymerase genes in tobacco: expression of only a distinct set of genes is not based on selective transcription of the plastid chromosome
inferredcites →https://doi.org/10.1007/s00425-002-0933-zopenalex-snapshot
Plastid transcription in the holoparasitic plant genus Cuscuta: parallel loss of the rrn16 PEP-promoter and of the rpoA and rpoB genes coding for the plastid-encoded RNA polymerase
inferredcites →https://doi.org/10.1007/s00425-003-1082-8openalex-snapshot
Plastids of three Cuscuta species differing in plastid coding capacity have a common parasite-specific RNA composition
inferredcites →https://doi.org/10.1007/s11120-005-7382-zopenalex-snapshot
Chloroplast sulfate transport in green algae – genes, proteins and effects
inferredcites →https://doi.org/10.1016/j.ympev.2006.01.001openalex-snapshot
Tree ferns: Monophyletic groups and their relationships as revealed by four protein-coding plastid loci
inferredcites →https://doi.org/10.1016/s0378-1119(02)00868-5openalex-snapshot
The obligate root parasite Orobanche cumana exhibits several rbcL sequences
inferredcites →https://doi.org/10.1017/cbo9781139171304.003openalex-snapshot
Morphology and classification of the Marchantiophyta
inferredcites →https://doi.org/10.1023/a:1005739223993openalex-snapshot
Alternate paths of evolution for the photosynthetic gene rbcL in four nonphotosynthetic species of Orobanche
inferredcites →https://doi.org/10.1023/a:1005860632601openalex-snapshot
Do nonasterid holoparasitic flowering plants have plastid genomes?
inferredcites →https://doi.org/10.1023/a:1007568326120openalex-snapshot
Distribution and Nomenclature of Protein-coding Genes in 12 Sequenced Chloroplast Genomes
inferredcites →https://doi.org/10.1038/322572a0openalex-snapshot
Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA
inferredcites →https://doi.org/10.1038/348337a0openalex-snapshot
Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant
inferredcites →https://doi.org/10.1042/bst0320567openalex-snapshot
Post-transcriptional steps involved in the assembly of photosystem I in Chlamydomonas
inferredcites →https://doi.org/10.1046/j.1469-8137.2002.00397.xopenalex-snapshot
Coevolution of roots and mycorrhizas of land plants
inferredcites →https://doi.org/10.1073/pnas.0603335103openalex-snapshot
The deepest divergences in land plants inferred from phylogenomic evidence
inferredcites →https://doi.org/10.1073/pnas.89.22.10648openalex-snapshot
Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant.
inferredcites →https://doi.org/10.1074/jbc.m112053200openalex-snapshot
Lack of the Small Plastid-encoded PsbJ Polypeptide Results in a Defective Water-splitting Apparatus of Photosystem II, Reduced Photosystem I Levels, and Hypersensitivity to Light
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
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HyPhy: hypothesis testing using phylogenies
inferredcites →https://doi.org/10.1093/emboj/16.13.4041openalex-snapshot
The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids
inferredcites →https://doi.org/10.1093/molbev/msi031openalex-snapshot
A Genetic Algorithm Approach to Detecting Lineage-Specific Variation in Selection Pressure
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The Evolution of Chloroplast RNA Editing
inferredcites →https://doi.org/10.1093/molbev/msm267openalex-snapshot
Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis
inferredcites →https://doi.org/10.1093/nar/gkg726openalex-snapshot
Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025853openalex-snapshot
The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic and nonphotosynthetic parasitic plants
inferredcites →https://doi.org/10.1093/sysbio/42.2.182openalex-snapshot
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis
inferredcites →https://doi.org/10.1098/rspb.2002.2299openalex-snapshot
Specialized cheating of the ectomycorrhizal symbiosis by an epiparasitic liverwort
inferredcites →https://doi.org/10.1098/rstb.2000.0617openalex-snapshot
Symbiotic fungal associations in ‘lower’ land plants
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Origin and relationships of the myco-heterotrophic liverwort Cryptothallus mirabilis Malmb. (Metzgeriales, Marchantiophyta)
inferredcites →https://doi.org/10.1111/j.1365-3040.2005.01378.xopenalex-snapshot
A unique mode of parasitism in the conifer coral treeParasitaxus ustus(Podocarpaceae)
inferredcites →https://doi.org/10.1111/j.1365-3040.2006.01510.xopenalex-snapshot
Stimulation of chlororespiration by heat and high light intensity in oat plants
inferredcites →https://doi.org/10.1111/j.1399-3054.1996.tb00242.xopenalex-snapshot
Organization of the reduced plastid genome of Lathraea clandestina, an ahlorophyllous parasitic plant
inferredcites →https://doi.org/10.1111/j.1469-8137.2005.01429.xopenalex-snapshot
The evolutionary ecology of myco‐heterotrophy
inferredcites →https://doi.org/10.1128/jb.105.3.1053-1062.1971openalex-snapshot
Genetics of Sulfate Transport by Salmonella typhimurium
inferredcites →https://doi.org/10.1128/jb.172.6.3351-3357.1990openalex-snapshot
Sulfate and thiosulfate transport in Escherichia coli K-12: nucleotide sequence and expression of the cysTWAM gene cluster
inferredcites →https://doi.org/10.1186/1471-2148-5-16openalex-snapshot
Rate variation in parasitic plants: correlated and uncorrelated patterns among plastid genes of different function
inferredcites →https://doi.org/10.1186/1471-2229-7-45openalex-snapshot
Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii
inferredcites →https://doi.org/10.1186/1471-2229-7-57openalex-snapshot
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
inferredcites →https://doi.org/10.1525/9780520417793openalex-snapshot
The Biology of Parasitic Flowering Plants
inferredcites →https://doi.org/10.1600/036364404774195458openalex-snapshot
Phylogenetic Relationships among the Mosses Based on Heterogeneous Bayesian Analysis of Multiple Genes from Multiple Genomic Compartments
inferredcites →https://doi.org/10.1639/0007-2745(2006)109[303:utehot]2.0.co;2openalex-snapshot
Unraveling the evolutionary history of the liverworts (Marchantiophyta): multiple taxa, genomes and analyses
inferredcites →https://doi.org/10.2307/2258548openalex-snapshot
The Biology of Parasitic Flowering Plants.
inferredcites →https://doi.org/10.2307/2446015openalex-snapshot
The structure and function of RuBisCO and their Implications for Systematic Studies
inferredcites →https://doi.org/10.2307/2446642openalex-snapshot
Circumscription and phylogeny of the Orthotrichales (Bryopsida) inferred from RBCL sequence analyses
inferredcites →https://doi.org/10.2307/25065363openalex-snapshot
Phylogenetic significance of the rpoA loss in the chloroplast genome of mosses
inferredcites →https://doi.org/10.2307/2807508openalex-snapshot
The Hepaticae and Anthocerotae of North America.
inferredcites →https://doi.org/10.2307/2992540openalex-snapshot
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis
inferredcites →https://doi.org/10.3732/ajb.92.9.1575openalex-snapshot
The evolution and expression of RBCL in holoparasitic sister‐genera Harveya and Hyobanche (Orobanchaceae)
inferredcites →https://doi.org/10.4102/abc.v31i2.515openalex-snapshot
Studies in the liverwort family Aneuraceae (Metzgeriales) from southern Africa. 1. The genus Aneura and its local representative

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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TYPIFICATION OF JUNGERMANNIA PINGUIS L. STUDIES ON THE GENUS ANEURA (MARCHANTIOPHYTA, ANEURACEAE)
inferred← citeshttps://doi.org/10.1007/978-1-4614-5209-6_1openalex-snapshot
Mycoheterotrophy: An Introduction
inferred← citeshttps://doi.org/10.1007/978-1-4614-5209-6_2openalex-snapshot
Taxonomy and Classification
inferred← citeshttps://doi.org/10.1007/978-1-4614-5209-6_5openalex-snapshot
Evolution and Diversification
inferred← citeshttps://doi.org/10.1007/978-3-642-22380-8_4openalex-snapshot
Plastid Genomes of Parasitic Plants: A Trail of Reductions and Losses
inferred← citeshttps://doi.org/10.1007/978-94-007-2920-9_4openalex-snapshot
Plastomes of Bryophytes, Lycophytes and Ferns
inferred← citeshttps://doi.org/10.1007/s00425-011-1494-9openalex-snapshot
Piecing together the puzzle of parasitic plant plastome evolution
inferred← citeshttps://doi.org/10.1007/s11103-011-9762-4openalex-snapshot
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
inferred← citeshttps://doi.org/10.1016/j.plaphy.2010.04.009openalex-snapshot
Plastid ndh genes in plant evolution
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107410openalex-snapshot
Plastome structure, evolution, and phylogeny of Selaginella
inferred← citeshttps://doi.org/10.1038/s41437-022-00540-2openalex-snapshot
Inheritance through the cytoplasm
inferred← citeshttps://doi.org/10.1080/03736687.2024.2428869openalex-snapshot
Recent diversification of Aneuraceae, an ancient family of simple thalloid liverworts
inferred← citeshttps://doi.org/10.1080/07388551.2021.1901648openalex-snapshot
Gauging the trends of pseudogenes in plants
inferred← citeshttps://doi.org/10.1093/aob/mcaf198openalex-snapshot
Repeated loss of plastid NDH during evolution of land plants
inferred← citeshttps://doi.org/10.1093/gbe/evr102openalex-snapshot
Sequencing and Analysis of Plastid Genome in Mycoheterotrophic Orchid Neottia nidus-avis
inferred← citeshttps://doi.org/10.1093/gbe/evz187openalex-snapshot
Plastome Reduction in the Only Parasitic Gymnosperm Parasitaxus Is Due to Losses of Photosynthesis but Not Housekeeping Genes and Apparently Involves the Secondary Gain of a Large Inverted Repeat
inferred← citeshttps://doi.org/10.1093/jxb/ery147openalex-snapshot
Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution
inferred← citeshttps://doi.org/10.1111/nph.13784openalex-snapshot
Massive intracellular gene transfer during plastid genome reduction in nongreen Orobanchaceae
inferred← citeshttps://doi.org/10.1111/nph.15072openalex-snapshot
Dense infraspecific sampling reveals rapid and independent trajectories of plastome degradation in a heterotrophic orchid complex
inferred← citeshttps://doi.org/10.1186/s12862-016-0675-3openalex-snapshot
Molecular evolution of anthocyanin pigmentation genes following losses of flower color
inferred← citeshttps://doi.org/10.1371/journal.pone.0188837openalex-snapshot
DNA barcoding, ecology and geography of the cryptic species of Aneura pinguis and their relationships with Aneura maxima and Aneura mirabilis (Metzgeriales, Marchantiophyta)
inferred← citeshttps://doi.org/10.1639/0007-2745-113.2.403openalex-snapshot
Recent literature on bryophytes—113(2)
inferred← citeshttps://doi.org/10.1639/0007-2745-114.1.28openalex-snapshot
Architecture of the mid-stage spermatid of Aneura pinguis (Aneuraceae)
inferred← citeshttps://doi.org/10.18699/icg-plantgen2019-55openalex-snapshot
NDH gene disruption – possible implication for adaptation of Allium species to different light conditions
inferred← citeshttps://doi.org/10.18699/icg-plantgen2019-82openalex-snapshot
Current Challenges in Plant Genetics, Genomics, Bioinformatics, and Biotechnology
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2514207/v1openalex-snapshot
Evolution of the most species-rich family of simple thalloid liverworts (Aneuraceae): a time-calibrated perspective into its evolutionary history and diversification
inferred← citeshttps://doi.org/10.3389/fpls.2024.1500607openalex-snapshot
From barcodes to genomes: a new era of molecular exploration in bryophyte research
inferred← citeshttps://doi.org/10.3390/genes8110324openalex-snapshot
The Chloroplast Genome of Symplocarpus renifolius: A Comparison of Chloroplast Genome Structure in Araceae
inferred← citeshttps://doi.org/10.3732/ajb.1100010openalex-snapshot
Frequent pseudogenization and loss of the plastid‐encoded sulfate‐transport gene cysA throughout the evolution of liverworts
inferred← citeshttps://doi.org/10.5091/plecevo.2011.535openalex-snapshot
Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure
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