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HyPhy: hypothesis testing using phylogenies

https://doi.org/10.1093/bioinformatics/bti079
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00160154openalex-snapshot
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
inferredcites →https://doi.org/10.1007/bf00166252openalex-snapshot
Statistical tests of models of DNA substitution
inferredcites →https://doi.org/10.1007/bf01734359openalex-snapshot
Evolutionary trees from DNA sequences: A maximum likelihood approach
inferredcites →https://doi.org/10.1007/bf02101694openalex-snapshot
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
inferredcites →https://doi.org/10.1016/0169-5347(96)10041-0openalex-snapshot
Among-site rate variation and its impact on phylogenetic analyses
inferredcites →https://doi.org/10.1080/10635150490522269openalex-snapshot
Column Sorting: Rapid Calculation of the Phylogenetic Likelihood Function
inferredcites →https://doi.org/10.1093/bioinformatics/13.5.555openalex-snapshot
PAML: a program package for phylogenetic analysis by maximum likelihood
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot
MODELTEST: testing the model of DNA substitution.
inferredcites →https://doi.org/10.1093/bioinformatics/17.2.149openalex-snapshot
An information-based sequence distance and its application to whole mitochondrial genome phylogeny
inferredcites →https://doi.org/10.1093/bioinformatics/17.7.662openalex-snapshot
PAL: an object-oriented programming library for molecular evolution and phylogenetics
inferredcites →https://doi.org/10.1093/bioinformatics/8.3.275openalex-snapshot
The rapid generation of mutation data matrices from protein sequences
inferredcites →https://doi.org/10.1093/genetics/132.1.269openalex-snapshot
Testing for equality of evolutionary rates.
inferredcites →https://doi.org/10.1093/genetics/146.1.393openalex-snapshot
Comparing Patterns of Nucleotide Substitution Rates Among Chloroplast Loci Using the Relative Ratio Test
inferredcites →https://doi.org/10.1093/genetics/148.3.929openalex-snapshot
Likelihood Models for Detecting Positively Selected Amino Acid Sites and Applications to the HIV-1 Envelope Gene
inferredcites →https://doi.org/10.1093/genetics/155.1.431openalex-snapshot
Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026042openalex-snapshot
A method for detecting positive selection at single amino acid sites
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040082openalex-snapshot
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040097openalex-snapshot
Accuracies of the Simple Methods for Estimating the Bootstrap Probability of a Maximum-Likelihood Tree
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040152openalex-snapshot
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.
inferredcites →https://doi.org/10.1109/tac.1974.1100705openalex-snapshot
A new look at the statistical model identification
inferredcites →https://doi.org/10.1142/9789814447331_0003openalex-snapshot
MODELING EVOLUTION AT THE PROTEIN LEVEL USING AN ADJUSTABLE AMINO ACID FITNESS MODEL
inferredcites →https://doi.org/10.1186/1471-2105-5-1openalex-snapshot
PyEvolve: a toolkit for statistical modelling of molecular evolution

What points at this work

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inferred← citeshttps://doi.org/10.1002/ece3.6855openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.72158openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.7281openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.72811openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.72897openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.74066openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.74361openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.78openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.7959openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.8398openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.8499openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.8562openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/ece3.9026openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jez.b.22857openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jmv.21366openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jmv.21968openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jmv.22269openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jmv.23187openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jmv.23233openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jmv.23237openalex-snapshot
Recombination and natural selection in hepatitis E virus genotypes
inferred← citeshttps://doi.org/10.1002/jmv.23398openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jmv.23816openalex-snapshot
Genetic attributes of blood‐derived subtype‐C HIV‐1 tat and env in India and neurocognitive function
inferred← citeshttps://doi.org/10.1002/jmv.23968openalex-snapshot
Evidence of distinct populations of hepatitis C virus in the liver and plasma of patients co‐infected with HIV and HCV
inferred← citeshttps://doi.org/10.1002/jmv.24345openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jmv.24523openalex-snapshot
Molecular epidemiology identifies HIV transmission networks associated with younger age and heterosexual exposure among Korean individuals
inferred← citeshttps://doi.org/10.1002/jmv.24884openalex-snapshot
Genetic diversity of human metapneumovirus in hospitalized children with acute respiratory infections in Croatia
inferred← citeshttps://doi.org/10.1002/jmv.25537openalex-snapshot
Cosmopolitan A1 lineage of dengue virus serotype 2 is circulating in Pakistan: A study from 2017 dengue viral outbreak
inferred← citeshttps://doi.org/10.1002/jmv.28973openalex-snapshot
Characteristics of genotype, drug resistance, and molecular transmission network among newly diagnosed HIV‐1 infections in Shenzhen, China
inferred← citeshttps://doi.org/10.1002/jmv.29824openalex-snapshot
Application of molecular epidemiology in revealing HIV‐1 transmission network and recombination patterns in Tianjin, China
inferred← citeshttps://doi.org/10.1002/pro.3870openalex-snapshot
Integrating structural and evolutionary data to interpret variation and pathogenicity in adapter protein complex 4
inferred← citeshttps://doi.org/10.1002/prot.21007openalex-snapshot
Starch‐synthase III family encodes a tandem of three starch‐binding domains
inferred← citeshttps://doi.org/10.1002/tax.12493openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/0-306-46900-6_7openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-0716-0795-4_5openalex-snapshot
Antigen Discovery in Bacterial Panproteomes
inferred← citeshttps://doi.org/10.1007/978-1-0716-2691-7_14openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-0716-3838-5_16openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4614-9224-5_8openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4614-9610-6_373-1openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-1438-8_4openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-1720-4_17openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-2438-7_4openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-6613-4_15openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-7101-5_373openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-8678-1_26openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-8736-8_6openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-9074-0_24openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-9845-6_6openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-59745-251-9_8openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-60327-367-1_15openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-61779-585-5_10openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-61779-585-5_22openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-62703-709-9_16openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-030-46012-9_18openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-032-24923-4_13openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-319-34106-4_5openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-540-70504-8_28openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-540-75763-4_10openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-540-87989-3_3openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-642-21878-1_22openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-642-28839-5_26openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-94-007-6416-3_27openalex-snapshot
Deadly Innovations: Unraveling the Molecular Evolution of Animal Venoms
inferred← citeshttps://doi.org/10.1007/978-94-007-6458-3_5openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-94-007-6649-5_27-1openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-94-007-6727-0_5-1openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-981-15-2445-5_13openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-981-16-3993-7_2openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00018-009-0185-1openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00018-023-05025-xopenalex-snapshot
CCDC146 is required for sperm flagellum biogenesis and male fertility in mice
inferred← citeshttps://doi.org/10.1007/s00040-012-0241-yopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00114-008-0446-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00227-011-1718-3openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00227-014-2515-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00239-002-2395-0openalex-snapshot
Broad-Scale Analysis Contradicts the Theory That Generation Time Affects Molecular Evolutionary Rates in Plants
inferred← citeshttps://doi.org/10.1007/s00239-003-2525-3openalex-snapshot
Likelihood Analysis of the Chalcone Synthase Genes Suggests the Role of Positive Selection in Morning Glories ( Ipomoea )
inferred← citeshttps://doi.org/10.1007/s00239-006-0016-zopenalex-snapshot
Evidence for Positive Selection on a Sexual Reproduction Gene in the Diatom Genus Thalassiosira (Bacillariophyta)
inferred← citeshttps://doi.org/10.1007/s00239-006-0108-9openalex-snapshot
Evolutionary Pathways of the tirant LTR Retrotransposon in the Drosophila melanogaster Subgroup of Species
inferred← citeshttps://doi.org/10.1007/s00239-007-9002-3openalex-snapshot
Convergent Evolution of Human and Bovine Haptoglobin: Partial Duplication of the Genes
inferred← citeshttps://doi.org/10.1007/s00239-008-9085-5openalex-snapshot
Selection on Length Mutations After Frameshift Can Explain the Origin and Retention of the AP3/DEF-Like Paralogues in Impatiens
inferred← citeshttps://doi.org/10.1007/s00239-008-9112-6openalex-snapshot
Positive Selection on HIV Accessory Proteins and the Analysis of Molecular Adaptation After Interspecies Transmission
inferred← citeshttps://doi.org/10.1007/s00239-008-9133-1openalex-snapshot
Distribution and Evolution of Pseudogenes, Gene Losses, and a Gene Rearrangement in the Plastid Genome of the Nonphotosynthetic Liverwort, Aneura mirabilis (Metzgeriales, Jungermanniopsida)
inferred← citeshttps://doi.org/10.1007/s00239-008-9142-0openalex-snapshot
The Phylogenetic Informativeness of Nucleotide and Amino Acid Sequences for Reconstructing the Vertebrate Tree
inferred← citeshttps://doi.org/10.1007/s00239-008-9156-7openalex-snapshot
A Molecular Footprint of Limb Loss: Sequence Variation of the Autopodial Identity Gene Hoxa-13
inferred← citeshttps://doi.org/10.1007/s00239-008-9172-7openalex-snapshot
Positive Darwinian Selection at Single Amino Acid Sites Conferring Plant Virus Resistance
inferred← citeshttps://doi.org/10.1007/s00239-008-9173-6openalex-snapshot
Selection on an Antimicrobial Peptide Defensin in Ants
inferred← citeshttps://doi.org/10.1007/s00239-009-9302-xopenalex-snapshot
Evolutionary Analysis of Mammalian Enamelin, The Largest Enamel Protein, Supports a Crucial Role for the 32-kDa Peptide and Reveals Selective Adaptation in Rodents and Primates
inferred← citeshttps://doi.org/10.1007/s00239-009-9307-5openalex-snapshot
Evolutionary Rates in Veronica L. (Plantaginaceae): Disentangling the Influence of Life History and Breeding System
inferred← citeshttps://doi.org/10.1007/s00239-009-9316-4openalex-snapshot
Strong Positive Selection Drives Rapid Diversification of R-Genes in Arabidopsis Relatives
inferred← citeshttps://doi.org/10.1007/s00239-010-9344-0openalex-snapshot
Circadian Input Kinases and Their Homologs in Cyanobacteria: Evolutionary Constraints Versus Architectural Diversification
inferred← citeshttps://doi.org/10.1007/s00239-010-9354-yopenalex-snapshot
The Evolutionary Dynamics of Bluetongue Virus
inferred← citeshttps://doi.org/10.1007/s00239-010-9393-4openalex-snapshot
Comparative Genomics of Marine Mussels (Mytilus spp.) Gender Associated mtDNA: Rapidly Evolving atp8
inferred← citeshttps://doi.org/10.1007/s00239-011-9468-xopenalex-snapshot
Heterogeneous Rates of Molecular Evolution Among Cryptic Species of the Ciliate Morphospecies Chilodonella uncinata
inferred← citeshttps://doi.org/10.1007/s00239-011-9473-0openalex-snapshot
Recombination Detection Under Evolutionary Scenarios Relevant to Functional Divergence
inferred← citeshttps://doi.org/10.1007/s00239-012-9483-6openalex-snapshot
Molecular Characterization of Two Endothelin Pathways in East African Cichlid Fishes
inferred← citeshttps://doi.org/10.1007/s00239-012-9496-1openalex-snapshot
Genes and Processed Paralogs Co-exist in Plant Mitochondria
inferred← citeshttps://doi.org/10.1007/s00239-012-9529-9openalex-snapshot
Structural and Molecular Diversification of the Anguimorpha Lizard Mandibular Venom Gland System in the Arboreal Species Abronia graminea
inferred← citeshttps://doi.org/10.1007/s00239-012-9538-8openalex-snapshot
Membrane Environment Imposes Unique Selection Pressures on Transmembrane Domains of G Protein-Coupled Receptors
inferred← citeshttps://doi.org/10.1007/s00239-013-9539-2openalex-snapshot
The Dentin Matrix Acidic Phosphoprotein 1 (DMP1) in the Light of Mammalian Evolution
inferred← citeshttps://doi.org/10.1007/s00239-013-9552-5openalex-snapshot
Molecular Phylogeny and Evolution of the Proteins Encoded by Coleoid (Cuttlefish, Octopus, and Squid) Posterior Venom Glands
inferred← citeshttps://doi.org/10.1007/s00239-013-9585-9openalex-snapshot
Lineage-Specific Duplications of Muroidea Faim and Spag6 Genes and Atypical Accelerated Evolution of the Parental Spag6 Gene
inferred← citeshttps://doi.org/10.1007/s00239-013-9600-1openalex-snapshot
The Glycogen Synthase 2 Gene (Gys2) Displays Parallel Evolution Between Old World and New World Fruit Bats
inferred← citeshttps://doi.org/10.1007/s00239-014-9618-zopenalex-snapshot
Positive Selection on MHC Class II DRB and DQB Genes in the Bank Vole (Myodes glareolus)
inferred← citeshttps://doi.org/10.1007/s00239-014-9630-3openalex-snapshot
Molecular Evolutionary History of Sugarcane yellow leaf virus Based on Sequence Analysis of RNA-Dependent RNA Polymerase and Putative Aphid Transmission Factor-Coding Genes
inferred← citeshttps://doi.org/10.1007/s00239-014-9632-1openalex-snapshot
Negative Purifying Selection Drives Prion and Doppel Protein Evolution
inferred← citeshttps://doi.org/10.1007/s00239-014-9644-xopenalex-snapshot
Predicting Evolutionary Site Variability from Structure in Viral Proteins: Buriedness, Packing, Flexibility, and Design
inferred← citeshttps://doi.org/10.1007/s00239-015-9713-9openalex-snapshot
Heterogeneity of $${\varvec{\rm d}}{\varvec{N}}/{\varvec{\rm d}}{\varvec{S}}$$ d N / d S Ratios at the Classical HLA Class I Genes over Divergence Time and Across the Allelic Phylogeny
inferred← citeshttps://doi.org/10.1007/s00239-016-9743-yopenalex-snapshot
Natural Selection in Virulence Genes of Francisella tularensis
inferred← citeshttps://doi.org/10.1007/s00239-016-9751-yopenalex-snapshot
Modeling Microvirus Capsid Protein Evolution Utilizing Metagenomic Sequence Data
inferred← citeshttps://doi.org/10.1007/s00239-016-9761-9openalex-snapshot
Measuring Accelerated Rates of Insertions and Deletions Independent of Rates of Nucleotide Substitution
inferred← citeshttps://doi.org/10.1007/s00239-016-9765-5openalex-snapshot
Finding Direction in the Search for Selection
inferred← citeshttps://doi.org/10.1007/s00239-017-9789-5openalex-snapshot
Evolutionary Analysis of the Mammalian Tuftelin Sequence Reveals Features of Functional Importance
inferred← citeshttps://doi.org/10.1007/s00239-017-9791-yopenalex-snapshot
Molecular Evolutionary Constraints that Determine the Avirulence State of Clostridium botulinum C2 Toxin
inferred← citeshttps://doi.org/10.1007/s00239-017-9792-xopenalex-snapshot
Plastome-Wide Nucleotide Substitution Rates Reveal Accelerated Rates in Papilionoideae and Correlations with Genome Features Across Legume Subfamilies
inferred← citeshttps://doi.org/10.1007/s00239-017-9825-5openalex-snapshot
Ancient Diversification of Three-Finger Toxins in Micrurus Coral Snakes
inferred← citeshttps://doi.org/10.1007/s00239-018-9834-zopenalex-snapshot
Genomic Insights into Evolution of AdpA Family Master Regulators of Morphological Differentiation and Secondary Metabolism in Streptomyces
inferred← citeshttps://doi.org/10.1007/s00239-018-9864-6openalex-snapshot
Three-Finger Toxin Diversification in the Venoms of Cat-Eye Snakes (Colubridae: Boiga)
inferred← citeshttps://doi.org/10.1007/s00239-019-09903-6openalex-snapshot
Signatures of Relaxed Selection in the CYP8B1 Gene of Birds and Mammals
inferred← citeshttps://doi.org/10.1007/s00239-020-09958-wopenalex-snapshot
Complete Chloroplast Genomes of Anthurium huixtlense and Pothos scandens (Pothoideae, Araceae): Unique Inverted Repeat Expansion and Contraction Affect Rate of Evolution
inferred← citeshttps://doi.org/10.1007/s00239-020-09968-8openalex-snapshot
Positive Selection in the Chloroplastic ATP-Synthase β-Subunit and Its Relation to Virulence Factors
inferred← citeshttps://doi.org/10.1007/s00239-020-09991-9openalex-snapshot
A Re-Assessment of Positive Selection on Mitochondrial Genomes of High-Elevation Phrynocephalus Lizards
inferred← citeshttps://doi.org/10.1007/s00239-021-10012-6openalex-snapshot
Dynamic Molecular Evolution of Mammalian Homeobox Genes: Duplication, Loss, Divergence and Gene Conversion Sculpt PRD Class Repertoires
inferred← citeshttps://doi.org/10.1007/s00239-021-10037-xopenalex-snapshot
Rapid Divergence of Key Spermatogenesis Genes in nasuta-Subgroup of Drosophila
inferred← citeshttps://doi.org/10.1007/s00239-022-10064-2openalex-snapshot
dN/dS-H, a New Test to Distinguish Different Selection Modes in Protein Evolution and Cancer Evolution
inferred← citeshttps://doi.org/10.1007/s00239-023-10133-0openalex-snapshot
Pseudogenization of the Hair-Related Genes PADI3 and S100A3 in Cetaceans and Hippopotamus amphibius
inferred← citeshttps://doi.org/10.1007/s00239-024-10156-1openalex-snapshot
Multiple Ecological Axes Drive Molecular Evolution of Cone Opsins in Beloniform Fishes
inferred← citeshttps://doi.org/10.1007/s00239-024-10170-3openalex-snapshot
Breathing Air and Living Underwater: Molecular Evolution of Genes Related to Antioxidant Response in Cetaceans and Pinnipeds
inferred← citeshttps://doi.org/10.1007/s00239-024-10177-wopenalex-snapshot
Genomic Gigantism is not Associated with Reduced Selection Efficiency in Neotropical Salamanders
inferred← citeshttps://doi.org/10.1007/s00239-025-10273-5openalex-snapshot
Cystathionine Gamma-Lyase: A Potential Longevity Gene Under Selection?
inferred← citeshttps://doi.org/10.1007/s00248-016-0812-yopenalex-snapshot
Spatial Patterns of bphA Gene Diversity Reveal Local Adaptation of Microbial Communities to PCB and PAH Contaminants
inferred← citeshttps://doi.org/10.1007/s00251-006-0119-0openalex-snapshot
Molecular genotype identification of the Gallus gallus major histocompatibility complex
inferred← citeshttps://doi.org/10.1007/s00251-009-0375-xopenalex-snapshot
Extremely high MHC class I variation in a population of a long-distance migrant, the Scarlet Rosefinch (Carpodacus erythrinus)
inferred← citeshttps://doi.org/10.1007/s00251-009-0411-xopenalex-snapshot
Polymorphism and signatures of selection in the multimammate rat DQB gene
inferred← citeshttps://doi.org/10.1007/s00251-010-0456-xopenalex-snapshot
MHC evolution in three salmonid species: a comparison between class II alpha and beta genes
inferred← citeshttps://doi.org/10.1007/s00251-010-0495-3openalex-snapshot
Structure, diversity and evolutionary patterns of expressed MHC class IIB genes in chub (Squalius cephalus), a cyprinid fish species from Europe
inferred← citeshttps://doi.org/10.1007/s00251-013-0708-7openalex-snapshot
Characterization of MHC class II B polymorphism in bottlenecked New Zealand saddlebacks reveals low levels of genetic diversity
inferred← citeshttps://doi.org/10.1007/s00251-015-0835-4openalex-snapshot
Positive selection drives the evolution of a major histocompatibility complex gene in an endangered Mexican salamander species complex
inferred← citeshttps://doi.org/10.1007/s00251-015-0860-3openalex-snapshot
Copy number variation and genetic diversity of MHC Class IIb alleles in an alien population of Xenopus laevis
inferred← citeshttps://doi.org/10.1007/s00251-016-0915-0openalex-snapshot
High genetic diversity and distribution of Bubu-DQA alleles in swamp buffaloes (Bubalus bubalis carabanesis): identification of new Bubu-DQA loci and haplotypes
inferred← citeshttps://doi.org/10.1007/s00251-016-0940-zopenalex-snapshot
Adaptive evolution of virus-sensing toll-like receptor 8 in bats
inferred← citeshttps://doi.org/10.1007/s00251-016-0953-7openalex-snapshot
MHC class II β exon 2 variation in pardalotes (Pardalotidae) is shaped by selection, recombination and gene conversion
inferred← citeshttps://doi.org/10.1007/s00251-017-0996-4openalex-snapshot
Small-scale intraspecific patterns of adaptive immunogenetic polymorphisms and neutral variation in Lake Superior lake trout
inferred← citeshttps://doi.org/10.1007/s00251-019-01104-1openalex-snapshot
Functional variation at an expressed MHC class IIβ locus associates with Ranavirus infection intensity in larval anuran populations
inferred← citeshttps://doi.org/10.1007/s00251-019-01128-7openalex-snapshot
Can extreme MHC class I diversity be a feature of a wide geographic range? The example of Seba’s short-tailed bat (Carollia perspicillata)
inferred← citeshttps://doi.org/10.1007/s00251-020-01156-8openalex-snapshot
Relaxation of selective constraints shapes variation of toll-like receptors in a colonial waterbird, the black-headed gull
inferred← citeshttps://doi.org/10.1007/s00251-022-01255-8openalex-snapshot
Intra-specific copy number variation of MHC class II genes in the Siamese fighting fish
inferred← citeshttps://doi.org/10.1007/s00251-023-01328-2openalex-snapshot
Patterns of evolution in MHC class II DQA and DQB exon 2 genes of Alpine mountain hares, Lepus timidus varronis, and sympatric and parapatric brown hares, L. europaeus, from Switzerland
inferred← citeshttps://doi.org/10.1007/s00251-024-01357-5openalex-snapshot
Evolutionary diversity of CXCL16-CXCR6: Convergent substitutions and recurrent gene loss in sauropsids
inferred← citeshttps://doi.org/10.1007/s00251-025-01372-0openalex-snapshot
Primary regulatory T cell activator FOXP3 is present across Amphibia
inferred← citeshttps://doi.org/10.1007/s00299-023-03102-wopenalex-snapshot
Remarkable mitochondrial genome heterogeneity in Meniocus linifolius (Brassicaceae)
inferred← citeshttps://doi.org/10.1007/s00300-013-1360-2openalex-snapshot
On the identity of two Antarctic brooding nemerteans: redescription of Antarctonemertes valida (Bürger, 1893) and description of a new species in the genus Antarctonemertes Friedrich, 1955 (Nemertea, Hoplonemertea)
inferred← citeshttps://doi.org/10.1007/s00300-020-02636-zopenalex-snapshot
Analyzing drivers of speciation in the Southern Ocean using the sea spider species complex Colossendeis megalonyx as a test case
inferred← citeshttps://doi.org/10.1007/s00300-020-02703-5openalex-snapshot
Mitochondrial genome diversity and population mitogenomics of polar cod (Boreogadus saida) and Arctic dwelling gadoids
inferred← citeshttps://doi.org/10.1007/s00335-018-9748-5openalex-snapshot
Changes in selection intensity on the mitogenome of subterranean and fossorial rodents respective to aboveground species
inferred← citeshttps://doi.org/10.1007/s00425-012-1788-6openalex-snapshot
What remains after 2 months of starvation? Analysis of sequestered algae in a photosynthetic slug, Plakobranchus ocellatus (Sacoglossa, Opisthobranchia), by barcoding
inferred← citeshttps://doi.org/10.1007/s00425-025-04696-zopenalex-snapshot
Aspartic proteases from Silybum marianum: different plant-specific inserts, different destinations
inferred← citeshttps://doi.org/10.1007/s00427-015-0491-6openalex-snapshot
The comparative study of five sex-determining proteins across insects unveils high rates of evolution at basal components of the sex determination cascade
inferred← citeshttps://doi.org/10.1007/s00438-010-0587-7openalex-snapshot
Relative evolutionary rates of NBS-encoding genes revealed by soybean segmental duplication
inferred← citeshttps://doi.org/10.1007/s00438-011-0664-6openalex-snapshot
The Y-segment of novel cold dehydrin genes is conserved and codons in the PR-10 genes are under positive selection in Oxytropis (Fabaceae) from contrasting climates
inferred← citeshttps://doi.org/10.1007/s00438-015-1068-9openalex-snapshot
Evolutionary analysis of RB/Rpi-blb1 locus in the Solanaceae family
inferred← citeshttps://doi.org/10.1007/s00438-026-02434-yopenalex-snapshot
Mitochondrial genomes from RNA-Seq reveal phylogeny and selection in Mepraia (Hemiptera: Reduviidae)
inferred← citeshttps://doi.org/10.1007/s00439-020-02211-wopenalex-snapshot
Genomic, transcriptomic, and protein landscape profile of CFTR and cystic fibrosis
inferred← citeshttps://doi.org/10.1007/s00439-022-02435-yopenalex-snapshot
Evolutionary history of type II transmembrane serine proteases involved in viral priming
inferred← citeshttps://doi.org/10.1007/s00606-010-0341-yopenalex-snapshot
Genome origins in Leymus (Poaceae: Triticeae): evidence of maternal and paternal progenitors and implications for reticulate evolution
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