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Utility of indels for species-level identification of a biologically complex plant group: a study with intergenic spacer in Citrus

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/mpev.1993.1006openalex-snapshot
Evolution of a Noncoding Region of the Chloroplast Genome
inferredcites →https://doi.org/10.1007/s00438-011-0658-4openalex-snapshot
Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for genetic association studies
inferredcites →https://doi.org/10.1007/s00606-007-0582-6openalex-snapshot
The architecture of the chloroplast psbA-trnH non-coding region in angiosperms
inferredcites →https://doi.org/10.1007/s11427-010-4009-1openalex-snapshot
Assessment of candidate plant DNA barcodes using the Rutaceae family
inferredcites →https://doi.org/10.1016/j.scienta.2008.08.030openalex-snapshot
Molecular phylogeny in Indian Citrus L. (Rutaceae) inferred through PCR-RFLP and trnL-trnF sequence data of chloroplast DNA
inferredcites →https://doi.org/10.1038/nature07175openalex-snapshot
Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes
inferredcites →https://doi.org/10.1073/pnas.0330964100openalex-snapshot
Majority of divergence between closely related DNA samples is due to indels
inferredcites →https://doi.org/10.1073/pnas.0905845106openalex-snapshot
A DNA barcode for land plants
inferredcites →https://doi.org/10.1093/aob/mcs227openalex-snapshot
A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the ‘true citrus fruit trees’ group (Citrinae, Rutaceae) and the origin of cultivated species
inferredcites →https://doi.org/10.1093/jhered/esq092openalex-snapshot
Recent Trends in Molecular Phylogenetic Analysis: Where to Next?
inferredcites →https://doi.org/10.1093/molbev/msg163openalex-snapshot
Molecular Evolution of Insertions and Deletion in the Chloroplast Genome of Silene
inferredcites →https://doi.org/10.1093/molbev/msg190openalex-snapshot
Patterns and Relative Rates of Nucleotide and Insertion/Deletion Evolution at Six Chloroplast Intergenic Regions in New World Species of the Lecythidaceae
inferredcites →https://doi.org/10.1093/nar/25.24.4876openalex-snapshot
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
inferredcites →https://doi.org/10.1093/sysbio/49.2.369openalex-snapshot
Gaps as Characters in Sequence-Based Phylogenetic Analyses
inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot
Biological identifications through DNA barcodes
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02641.xopenalex-snapshot
DNA barcoding discriminates a new cryptic grass species revealed in an ethnobotany study by the hill tribes of the Western Ghats in southern India
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02652.xopenalex-snapshot
Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?
inferredcites →https://doi.org/10.1371/journal.pone.0013674openalex-snapshot
Universal Plant DNA Barcode Loci May Not Work in Complex Groups: A Case Study with Indian Berberis Species
inferredcites →https://doi.org/10.1371/journal.pone.0029877openalex-snapshot
DNA Barcoding Bromeliaceae: Achievements and Pitfalls
inferredcites →https://doi.org/10.1371/journal.pone.0053704openalex-snapshot
The Species Dilemma of Northeast Indian Mahseer (Actinopterygii: Cyprinidae): DNA Barcoding in Clarifying the Riddle
inferredcites →https://doi.org/10.3390/ijms13078740openalex-snapshot
Sampling Strategy and Potential Utility of Indels for DNA Barcoding of Closely Related Plant Species: A Case Study in Taxus
inferredcites →https://doi.org/10.3732/ajb.0800246openalex-snapshot
DNA barcoding will frequently fail in complicated groups: An example in wild potatoes
inferredcites →https://doi.org/10.3732/ajb.0800341openalex-snapshot
A molecular phylogeny of the orange subfamily(Rutaceae: Aurantioideae) using nine cpDNA sequences
inferredcites →https://doi.org/10.4103/0973-1296.113284openalex-snapshot
Identification of ethnomedicinal plants (Rauvolfioideae: Apocynaceae) through DNA barcoding from northeast India

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.4679.1.10zenodo-depositor-declared
Mesobiotus datanlanicus sp. nov., a new tardigrade species (Macrobiotidae: Mesobiotus harmsworthi group) from Lâm Đồng Province in Vietnam
inferred← citeshttps://doi.org/10.5281/zenodo.3466242zenodo-depositor-declared
inferred← citeshttps://doi.org/10.1002/pld3.70078openalex-snapshot
Comparative Three‐Barcode Phylogenetics and Soil Microbiomes of Planted and Wild Arbutus Strawberry Trees
inferred← citeshttps://doi.org/10.1007/978-3-031-25775-9_2openalex-snapshot
Citron Genomics
inferred← citeshttps://doi.org/10.1007/978-3-319-62229-3_9openalex-snapshot
How Far Advanced is the DNA-Based Identification of the BELFRIT-List?
inferred← citeshttps://doi.org/10.1007/s10068-022-01143-7openalex-snapshot
Application of DNA barcoding for ensuring food safety and quality
inferred← citeshttps://doi.org/10.1007/s10722-018-0685-7openalex-snapshot
New Citrus chloroplast haplotypes revealed by molecular markers using Algerian and Spanish accessions
inferred← citeshttps://doi.org/10.1007/s10722-020-01022-2openalex-snapshot
Insight to the ancestral relations and varietal diversity of Indian tea [Camellia sinensis (L.) Kuntze] through plastid and nuclear phylogenetic markers
inferred← citeshttps://doi.org/10.1007/s10722-021-01279-1openalex-snapshot
New report of Citrus indica Yu. Tanaka, a wild progenitor species of citrus from Dailong Forest, Manipur, and recommendation for its conservation
inferred← citeshttps://doi.org/10.1007/s11033-017-4097-0openalex-snapshot
A report on identification of sequence polymorphism in barcode region of six commercially important Cymbopogon species
inferred← citeshttps://doi.org/10.1007/s12161-017-1070-4openalex-snapshot
A Cost-Efficient and Simple Plant Oil DNA Extraction Protocol Optimized for DNA-Based Assessment of Product Authenticity
inferred← citeshttps://doi.org/10.1007/s12161-020-01857-6openalex-snapshot
Identification of Suitable Barcodes for Specifically Detecting Adulterants of Turnip (Brassica rapa) and Radish (Raphanus sativus) in Maca (Lepidium meyenii)
inferred← citeshttps://doi.org/10.1016/j.arabjc.2023.104681openalex-snapshot
The young fruit of Citrus aurantium L. or Citrus sinensis Osbeck as a natural health food: A deep insight into the scientific evidence of its health benefits
inferred← citeshttps://doi.org/10.1016/j.foodcont.2018.03.029openalex-snapshot
Plastid trnH-psbA intergenic spacer serves as a PCR-based marker to detect common grain adulterants of coffee ( Coffea arabica L.)
inferred← citeshttps://doi.org/10.1016/j.sajb.2022.04.013openalex-snapshot
Application of DNA barcoding tool for authentication of traditionally important medicinal Dendrobium (Orchidaceae) species from Sikkim Himalaya
inferred← citeshttps://doi.org/10.1080/19476337.2020.1727961openalex-snapshot
A trnH-psbA barcode genotyping assay for the detection of common apricot ( Prunus armeniaca L.) adulteration in almond ( Prunus dulcis Mill.)
inferred← citeshttps://doi.org/10.1080/23335777.2021.1879274openalex-snapshot
Indel-K2P: a modified Kimura 2 Parameters (K2P) model to incorporate insertion and deletion (Indel) information in phylogenetic analysis
inferred← citeshttps://doi.org/10.1139/gen-2019-0210openalex-snapshot
Molecular phylogeny of the Ficus virens complex (Moraceae)
inferred← citeshttps://doi.org/10.1371/journal.pone.0125574openalex-snapshot
Evaluation of Four Commonly Used DNA Barcoding Loci for Chinese Medicinal Plants of the Family Schisandraceae
inferred← citeshttps://doi.org/10.21203/rs.3.rs-191171/v1openalex-snapshot
Rediscovery and Characterization of Citrus Indica Tanaka, A Wild Endangered and Progenitor Species in Dailong Forest, Manipur, and Recommendations for Its Conservation.
inferred← citeshttps://doi.org/10.2139/ssrn.6668183openalex-snapshot
Chemometrics-Enhanced 2D-IR-COS for Rapid Discrimination of Rutaceae Fruit Pericarp with HPLC Validation
inferred← citeshttps://doi.org/10.21608/ejdr.2023.214645.1144openalex-snapshot
DNA BARCODE TRNH-PSBA IS A PROMISING CANDIDATE GENE FOR EFFICIENT IDENTIFICATION OF BITTER AND SWEET ALMOND AND RELATED SPECIES
inferred← citeshttps://doi.org/10.23902/trkjnat.1324202openalex-snapshot
IDENTIFICATION OF LENS CULTIVARS IN MARKET BY MOLECULAR TOOLS: DNA BARCODING AND SSRs
inferred← citeshttps://doi.org/10.3389/fgene.2025.1650244openalex-snapshot
HFTC: a hierarchical fungal taxonomic classification model for ITS sequences using low-dimensional embedding features
inferred← citeshttps://doi.org/10.3390/genes10030229openalex-snapshot
Tubulin-Based DNA Barcode: Principle and Applications to Complex Food Matrices
inferred← citeshttps://doi.org/10.3390/molecules26071914openalex-snapshot
Essential Oil Composition and DNA Barcode and Identification of Aniba species (Lauraceae) Growing in the Amazon Region
inferred← citeshttps://doi.org/10.55730/1300-008x.2675openalex-snapshot
DNA barcoding analysis and phylogenetic relationships of Indian wild coffee species
inferred← citeshttps://doi.org/10.7717/peerj.16486openalex-snapshot
Assessment of genetic diversity and phylogenetic relationship of local coffee populations in southwestern Saudi Arabia using DNA barcoding
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