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Plastomes of Mimosoideae: structural and size variation, sequence divergence, and phylogenetic implication

https://doi.org/10.1007/s11295-017-1124-1

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A proposal for a standardised protocol to barcode all land plants

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The Distribution and Phylogenetic Significance of a 50-kb Chloroplast DNA Inversion in the Flowering Plant Family Leguminosae

inferredcites →https://doi.org/10.1007/4735_2007_0223openalex-snapshot

Structure, function, and inheritance of plastid genomes

inferredcites →https://doi.org/10.1007/978-1-4615-3276-7_2openalex-snapshot

Use of Chloroplast DNA Rearrangements in Reconstructing Plant Phylogeny

inferredcites →https://doi.org/10.1007/978-94-007-2920-9_5openalex-snapshot

Plastid Genomes of Seed Plants

inferredcites →https://doi.org/10.1007/bf00176089openalex-snapshot

Structural rearrangements, including parallel inversions, within the chloroplast genome of Anemone and related genera

inferredcites →https://doi.org/10.1007/bf00314450openalex-snapshot

A mutation hotspot in the chloroplast genome of a conifer (Douglas-fir: Pseudotsuga) is caused by variability in the number of direct repeats derived from a partially duplicated tRNA gene

inferredcites →https://doi.org/10.1007/bf00355401openalex-snapshot

Chloroplast DNA evolution among legumes: Loss of a large inverted repeat occurred prior to other sequence rearrangements

inferredcites →https://doi.org/10.1007/bf00384377openalex-snapshot

Nicotiana chloroplast genome

inferredcites →https://doi.org/10.1007/bf00405856openalex-snapshot

Evolutionary significance of inversions in legume chloroplast DNAs

inferredcites →https://doi.org/10.1007/bf00418530openalex-snapshot

Structural evolution and flip-flop recombination of chloroplast DNA in the fern genus Osmunda

inferredcites →https://doi.org/10.1007/bf00983544openalex-snapshot

Characterization and phylogenetic distribution of a chloroplast DNA rearrangement in theBerberidaceae

inferredcites →https://doi.org/10.1007/bf02173220openalex-snapshot

Ebb and flow of the chloroplast inverted repeat

inferredcites →https://doi.org/10.1007/s00239-002-2333-yopenalex-snapshot

Nucleotide Substitution Rates in Legume Chloroplast DNA Depend on the Presence of the Inverted Repeat

inferredcites →https://doi.org/10.1007/s00239-004-2598-7openalex-snapshot

TrnL–trnF Intergenic Spacer and trnL Intron Define Major Clades Within Luzula and Juncus (Juncaceae): Importance of Structural Mutations

inferredcites →https://doi.org/10.1007/s00239-008-9086-4openalex-snapshot

Extensive Rearrangements in the Chloroplast Genome of Trachelium caeruleum Are Associated with Repeats and tRNA Genes

inferredcites →https://doi.org/10.1007/s00239-008-9180-7openalex-snapshot

Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions

inferredcites →https://doi.org/10.1007/s002940050225openalex-snapshot

The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families

inferredcites →https://doi.org/10.1007/s00299-010-0929-2openalex-snapshot

Complete sequencing and comparative analyses of the pepper (Capsicum annuum L.) plastome revealed high frequency of tandem repeats and large insertion/deletions on pepper plastome

inferredcites →https://doi.org/10.1007/s11103-005-8882-0openalex-snapshot

Complete Chloroplast Genome Sequence of Glycine max and Comparative Analyses with other Legume Genomes

inferredcites →https://doi.org/10.1007/s11103-011-9753-5openalex-snapshot

Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)

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Deviations from michaelis-menten behaviour of plant glutamate dehydrogenase with ammonium as variable substrate

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Molecular evolution of the leguminosae: Phylogeny of the three subfamilies based on rbcL-sequences

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Plastid Chromosomes: Structure and Evolution

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The Molecular Biology of Plastids

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Gene duplication, transfer, and evolution in the chloroplast genome

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Phylogenetic signal in matK vs. trnK: A case study in early diverging eudicots (angiosperms)

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Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae)

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A classification of the Chloridoideae (Poaceae) based on multi-gene phylogenetic trees.

inferredcites →https://doi.org/10.1016/j.ympev.2010.07.019openalex-snapshot

The evolutionary history and biogeography of Mimosoideae (Leguminosae): An emphasis on African acacias

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot

Fast gapped-read alignment with Bowtie 2

inferredcites →https://doi.org/10.1038/nrg1603openalex-snapshot

Phylogenomics and the reconstruction of the tree of life

inferredcites →https://doi.org/10.1038/srep16958openalex-snapshot

Mimosoid legume plastome evolution: IR expansion, tandem repeat expansions and accelerated rate of evolution in clpP

inferredcites →https://doi.org/10.1038/srep21669openalex-snapshot

Intraspecific and heteroplasmic variations, gene losses and inversions in the chloroplast genome of Astragalus membranaceus

inferredcites →https://doi.org/10.1043/02-48.1openalex-snapshot

A Phylogenetic Analysis of the Acacieae and Ingeae (Mimosoideae: Fabaceae) based on trnK, matK, psbA-trnH, and trnL/trnF Sequence Data

inferredcites →https://doi.org/10.1071/sb11042openalex-snapshot

Evolutionary and taxonomic relationships of Acacia s.l. (Leguminosae: Mimosoideae)

inferredcites →https://doi.org/10.1073/pnas.0503123102openalex-snapshot

Use of DNA barcodes to identify flowering plants

inferredcites →https://doi.org/10.1073/pnas.0708072104openalex-snapshot

Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

inferredcites →https://doi.org/10.1073/pnas.0709121104openalex-snapshot

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

inferredcites →https://doi.org/10.1073/pnas.0907801107openalex-snapshot

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

inferredcites →https://doi.org/10.1073/pnas.1205818109openalex-snapshot

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

inferredcites →https://doi.org/10.1073/pnas.1323926111openalex-snapshot

Phylotranscriptomic analysis of the origin and early diversification of land plants

inferredcites →https://doi.org/10.1073/pnas.84.3.769openalex-snapshot

Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families

inferredcites →https://doi.org/10.1073/pnas.85.22.8573openalex-snapshot

Intramolecular recombination of chloroplast genome mediated by short direct-repeat sequences in wheat species.

inferredcites →https://doi.org/10.1073/pnas.91.21.9794openalex-snapshot

Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii.

inferredcites →https://doi.org/10.1073/pnas.92.22.10379openalex-snapshot

ndhF sequence evolution and the major clades in the sunflower family.

inferredcites →https://doi.org/10.1079/9780851999043.0000openalex-snapshot

Plant diversity and evolution: genotypic and phenotypic variation in higher plants

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Chloroplast genomes of plants.

inferredcites →https://doi.org/10.1080/10635150801888871openalex-snapshot

Resolving an Ancient, Rapid Radiation in Saxifragales

inferredcites →https://doi.org/10.1086/684526openalex-snapshot

Phylogenomics and Plastome Evolution of the Chloridoid Grasses (Chloridoideae: Poaceae)

inferredcites →https://doi.org/10.1093/aob/mct264openalex-snapshot

Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

inferredcites →https://doi.org/10.1093/aob/mcu050openalex-snapshot

The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family

inferredcites →https://doi.org/10.1093/aob/mcw065openalex-snapshot

Variable presence of the inverted repeat and plastome stability inErodium

inferredcites →https://doi.org/10.1093/bioinformatics/bth352openalex-snapshot

Automatic annotation of organellar genomes with DOGMA

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Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

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Complete Structure of the Chloroplast Genome of a Legume, Lotus japonicus

inferredcites →https://doi.org/10.1093/gbe/evs021openalex-snapshot

The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat Contraction

inferredcites →https://doi.org/10.1093/gbe/evu046openalex-snapshot

Predominant and Substoichiometric Isomers of the Plastid Genome Coexist within Juniperus Plants and Have Shifted Multiple Times during Cupressophyte Evolution

inferredcites →https://doi.org/10.1093/gbe/evv260openalex-snapshot

Plastid Phylogenomic Analyses Resolve Tofieldiaceae as the Root of the Early Diverging Monocot Order Alismatales

inferredcites →https://doi.org/10.1093/gbe/evw167openalex-snapshot

Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content

inferredcites →https://doi.org/10.1093/molbev/msi092openalex-snapshot

Evolution of the trnF(GAA) Gene in Arabidopsis Relatives and the Brassicaceae Family: Monophyletic Origin and Subsequent Diversification of a Plastidic Pseudogene

inferredcites →https://doi.org/10.1093/molbev/msl089openalex-snapshot

The Complete Chloroplast Genome Sequence of Pelargonium × hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants

inferredcites →https://doi.org/10.1093/molbev/msm036openalex-snapshot

Gene Relocations within Chloroplast Genomes of Jasminum and Menodora (Oleaceae) Are Due to Multiple, Overlapping Inversions

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/msq170openalex-snapshot

The Position of Gnetales among Seed Plants: Overcoming Pitfalls of Chloroplast Phylogenomics

inferredcites →https://doi.org/10.1093/molbev/msq229openalex-snapshot

Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

inferredcites →https://doi.org/10.1093/molbev/mst257openalex-snapshot

Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates

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Tandem repeats finder: a program to analyze DNA sequences

inferredcites →https://doi.org/10.1093/nar/29.22.4633openalex-snapshot

REPuter: the manifold applications of repeat analysis on a genomic scale

inferredcites →https://doi.org/10.1093/nar/gkh458openalex-snapshot

VISTA: computational tools for comparative genomics

inferredcites →https://doi.org/10.1093/nar/gki366openalex-snapshot

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

inferredcites →https://doi.org/10.1093/nar/gkn081openalex-snapshot

The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera , subsection Oenothera : I. Sequence evaluation and plastome evolution †

inferredcites →https://doi.org/10.1093/nar/gkt289openalex-snapshot

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026043openalex-snapshot

Molecular evolution of a tandemly repeated trnF(GAA) gene in the chloroplast genomes of Microseris (Asteraceae) and the use of structural mutations in phylogenetic analyses

inferredcites →https://doi.org/10.1093/sysbio/syr089openalex-snapshot

Phylogenomic Analysis Resolves the Interordinal Relationships and Rapid Diversification of the Laurasiatherian Mammals

inferredcites →https://doi.org/10.1093/sysbio/sys039openalex-snapshot

The Pipid Root

inferredcites →https://doi.org/10.1098/rspb.2015.1553openalex-snapshot

Orchid phylogenomics and multiple drivers of their extraordinary diversification

inferredcites →https://doi.org/10.1101/gr.111955.110openalex-snapshot

Localized hypermutation and associated gene losses in legume chloroplast genomes

inferredcites →https://doi.org/10.1101/gr.8.3.163openalex-snapshot

Phylogenomics: Improving Functional Predictions for Uncharacterized Genes by Evolutionary Analysis

inferredcites →https://doi.org/10.1105/tpc.113.113373openalex-snapshot

Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family

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Creating the CIPRES Science Gateway for inference of large phylogenetic trees

inferredcites →https://doi.org/10.1111/1755-0998.12165openalex-snapshot

Comparative studies on species identification of Noctuoidea moths in two nature reserve conservation zones ( B eijing, C hina) using DNA barcodes and thin‐film biosensor chips

inferredcites →https://doi.org/10.1111/1755-0998.12251openalex-snapshot

Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs

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PHYLOGEOGRAPHIC HISTORY OF THE LAND SNAIL CANDIDULA UNIFASCIATA (HELICELLINAE, STYLOMMATOPHORA): FRAGMENTATION, CORRIDOR MIGRATION, AND SECONDARY CONTACT

inferredcites →https://doi.org/10.1111/j.1558-5646.1990.tb05207.xopenalex-snapshot

EVOLUTIONARY SIGNIFICANCE OF THE LOSS OF THE CHLOROPLAST‐DNA INVERTED REPEAT IN THE LEGUMINOSAE SUBFAMILY PAPILIONOIDEAE

inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02642.xopenalex-snapshot

Testing plant barcoding in a sister species complex of pantropical Acacia (Mimosoideae, Fabaceae)

inferredcites →https://doi.org/10.1111/jse.12197openalex-snapshot

Fifteen novel universal primer pairs for sequencing whole chloroplast genomes and a primer pair for nuclear ribosomal DNAs

inferredcites →https://doi.org/10.1111/nph.13743openalex-snapshot

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

inferredcites →https://doi.org/10.1111/pbi.12141openalex-snapshot

Highly rearranged and size‐variable chloroplast genomes in conifers II clade (cupressophytes): evolution towards shorter intergenic spacers

inferredcites →https://doi.org/10.1111/pbi.12179openalex-snapshot

Evolutionary and biotechnology implications of plastid genome variation in the inverted‐repeat‐lacking clade of legumes

inferredcites →https://doi.org/10.1126/science.1086292openalex-snapshot

Phylogenomics: Intersection of Evolution and Genomics

inferredcites →https://doi.org/10.1139/b06-047openalex-snapshot

DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach

inferredcites →https://doi.org/10.1186/1471-2105-5-1openalex-snapshot

PyEvolve: a toolkit for statistical modelling of molecular evolution

inferredcites →https://doi.org/10.1186/1471-2105-5-113openalex-snapshot

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

inferredcites →https://doi.org/10.1186/1471-2148-13-8openalex-snapshot

Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes

inferredcites →https://doi.org/10.1186/1471-2148-14-23openalex-snapshot

From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

inferredcites →https://doi.org/10.1186/1471-2148-8-36openalex-snapshot

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

inferredcites →https://doi.org/10.1186/1471-2164-8-228openalex-snapshot

Rapid evolutionary change of common bean (Phaseolus vulgaris L) plastome, and the genomic diversification of legume chloroplasts

inferredcites →https://doi.org/10.1186/s12862-014-0228-6openalex-snapshot

Evolutionary origin of highly repetitive plastid genomes within the clover genus (Trifolium)

inferredcites →https://doi.org/10.1186/s12862-015-0321-5openalex-snapshot

Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis

inferredcites →https://doi.org/10.12705/622.8openalex-snapshot

Legume phylogeny and classification in the 21st century: Progress, prospects and lessons for other species–rich clades

inferredcites →https://doi.org/10.1371/journal.pone.0001386openalex-snapshot

Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene

inferredcites →https://doi.org/10.1371/journal.pone.0019254openalex-snapshot

Choosing and Using a Plant DNA Barcode

inferredcites →https://doi.org/10.1371/journal.pone.0020596openalex-snapshot

High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)

inferredcites →https://doi.org/10.1371/journal.pone.0030619openalex-snapshot

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

inferredcites →https://doi.org/10.1371/journal.pone.0035071openalex-snapshot

Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding

inferredcites →https://doi.org/10.1371/journal.pone.0051687openalex-snapshot

Capturing the Biofuel Wellhead and Powerhouse: The Chloroplast and Mitochondrial Genomes of the Leguminous Feedstock Tree Pongamia pinnata

inferredcites →https://doi.org/10.1371/journal.pone.0120589openalex-snapshot

Complete Chloroplast Genome of the Multifunctional Crop Globe Artichoke and Comparison with Other Asteraceae

inferredcites →https://doi.org/10.1371/journal.pone.0125768openalex-snapshot

The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

inferredcites →https://doi.org/10.1371/journal.pone.0138367openalex-snapshot

Correction: The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

inferredcites →https://doi.org/10.1600/036364409788606316openalex-snapshot

Phylogenetic Relationships Among the Recognized Series in Iris Section Limniris

inferredcites →https://doi.org/10.1600/036364415x686620openalex-snapshot

A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions

inferredcites →https://doi.org/10.2307/2409416openalex-snapshot

Evolutionary Significance of the Loss of the Chloroplast-DNA Inverted Repeat in the Leguminosae Subfamily Papilionoideae

inferredcites →https://doi.org/10.2307/2666726openalex-snapshot

Expansion and Contraction of the Chloroplast Inverted Repeat in Apiaceae Subfamily Apioideae

inferredcites →https://doi.org/10.3109/19401736.2015.1053118openalex-snapshot

Complete plastid genome of Astragalus mongholicus var. nakaianus (Fabaceae)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Complete chloroplast genome of Albizia kalkora (Fabaceae) in Korea and its taxonomic position

inferred← citeshttps://doi.org/10.1016/j.jfca.2023.105252openalex-snapshot

Nutrient profiling of lablab bean (Lablab purpureus) from north-eastern India: A potential legume for plant-based meat alternatives

inferred← citeshttps://doi.org/10.1016/j.pld.2018.04.003openalex-snapshot

Plastome characteristics of Cannabaceae

inferred← citeshttps://doi.org/10.1016/j.pld.2020.06.008openalex-snapshot

Plastid phylogenomic insights into the evolution of subfamily Dialioideae (Leguminosae)

inferred← citeshttps://doi.org/10.1016/j.plgene.2019.100216openalex-snapshot

The complete chloroplast genome of Chinese medicine (Psoralea corylifolia): Molecular structures, barcoding and phylogenetic analysis

inferred← citeshttps://doi.org/10.1016/j.plgene.2024.100486openalex-snapshot

Evolutionary dynamics of Senna: Perspectives from plastome evolution and phylogenomics

inferred← citeshttps://doi.org/10.1016/j.ygeno.2021.03.022openalex-snapshot

Transcriptome and metabolome profiling in naturally infested Casuarina equisetifolia clones by Ralstonia solanacearum

inferred← citeshttps://doi.org/10.1038/s41598-019-50620-3openalex-snapshot

The complete chloroplast genome of Stryphnodendron adstringens (Leguminosae - Caesalpinioideae): comparative analysis with related Mimosoid species

inferred← citeshttps://doi.org/10.1038/s41598-020-73392-7openalex-snapshot

The complete chloroplast genome of Gleditsia sinensis and Gleditsia japonica: genome organization, comparative analysis, and development of taxon specific DNA mini-barcodes

inferred← citeshttps://doi.org/10.1038/s41598-020-80225-0openalex-snapshot

Uncovering dynamic evolution in the plastid genome of seven Ligusticum species provides insights into species discrimination and phylogenetic implications

inferred← citeshttps://doi.org/10.1038/s41598-022-17721-yopenalex-snapshot

Phylogenetic analysis based on single-copy orthologous proteins in highly variable chloroplast genomes of Corydalis

inferred← citeshttps://doi.org/10.1038/s41598-024-64287-yopenalex-snapshot

Structure, gene composition, divergence time and phylogeny analysis of the woody desert species Neltuma alba, Neltuma chilensis and Strombocarpa strombulifera

inferred← citeshttps://doi.org/10.1071/sb19019openalex-snapshot

Advances in legume research in the genomics era

inferred← citeshttps://doi.org/10.1080/23802359.2018.1536481openalex-snapshot

The complete plastid genomes of two Fabaceae orphan crops from Africa

inferred← citeshttps://doi.org/10.1080/23802359.2021.1878961openalex-snapshot

The complete chloroplast genome of Galega officinalis L.

inferred← citeshttps://doi.org/10.1080/23802359.2022.2068974openalex-snapshot

Complete chloroplast genome sequence of Pithecellobium clypearia (Jack) Benth.

inferred← citeshttps://doi.org/10.1080/23802359.2023.2284410openalex-snapshot

The complete chloroplast genome of Polygala subopposita , an endemic milkwort in China

inferred← citeshttps://doi.org/10.1080/23802359.2025.2482279openalex-snapshot

The complete chloroplast genome of Polygala tatarinowii (Polygalaceae)

inferred← citeshttps://doi.org/10.1086/719959openalex-snapshot

Plastid Genomes of the Hemiparasitic GenusKrameria(Zygophyllales) Are Intact and Exhibit Little Relaxation in Selection

inferred← citeshttps://doi.org/10.1093/aobpla/plaf025openalex-snapshot

Novel perspectives on plastome evolution in Onagraceae

inferred← citeshttps://doi.org/10.1093/aobpla/plaf032openalex-snapshot

Comparative plastomes of five Psittacanthus species: genome organization, structural features, and patterns of pseudogenization and gene loss

inferred← citeshttps://doi.org/10.1093/forestry/cpz050openalex-snapshot

White spruce wood quality for lumber products: priority traits and their enhancement through tree improvement

inferred← citeshttps://doi.org/10.1093/treephys/tpaa133openalex-snapshot

Effect of elevated gibberellic acid application on growth and gene expression patterns in white spruce families from a tree improvement program in Alberta, Canada

inferred← citeshttps://doi.org/10.1111/jse.12854openalex-snapshot

Mutational meltdown or controlled chain reaction: The dynamics of rapid plastome evolution in the hyperdiversity of Poaceae

inferred← citeshttps://doi.org/10.1111/jse.70015openalex-snapshot

Plastome evolution in the Caesalpinia group (Caesalpinioideae, Fabaceae): Comparative genomics reveals genome dynamics, phylogenetic insights and adaptive evolution

inferred← citeshttps://doi.org/10.1139/gen-2024-0020openalex-snapshot

Chloroplast genome of Ecbolium viride (Forssk.) Alston: plastome evolution and phylogenomics of Justiceae (Acanthaceae, Acanthoideae)

inferred← citeshttps://doi.org/10.1177/00368504241272741openalex-snapshot

Comparative genomics revealed new insights into the plastome evolution of Ludwigia (Onagraceae, Myrtales)

inferred← citeshttps://doi.org/10.1186/s12864-019-6420-8openalex-snapshot

Genomic selection for non-key traits in radiata pine when the documented pedigree is corrected using DNA marker information

inferred← citeshttps://doi.org/10.1186/s12864-021-08259-wopenalex-snapshot

Comparative genomics and phylogenetic relationships of two endemic and endangered species (Handeliodendron bodinieri and Eurycorymbus cavaleriei) of two monotypic genera within Sapindales

inferred← citeshttps://doi.org/10.1186/s12864-022-08449-0openalex-snapshot

Cross-species transcriptomes reveal species-specific and shared molecular adaptations for plants development on iron-rich rocky outcrops soils

inferred← citeshttps://doi.org/10.1186/s12870-020-02723-7openalex-snapshot

Demographic history and genetic differentiation of an endemic and endangered Ulmus lamellosa (Ulmus)

inferred← citeshttps://doi.org/10.1186/s12870-022-03480-5openalex-snapshot

Phylogenomic and comparative analyses of Coffeeae alliance (Rubiaceae): deep insights into phylogenetic relationships and plastome evolution

inferred← citeshttps://doi.org/10.1186/s12870-025-06586-8openalex-snapshot

Plastome phylogenomics unravels the evolutionary relationships and biogeographic history of Chloranthaceae

inferred← citeshttps://doi.org/10.1186/s12870-025-07073-wopenalex-snapshot

Evolutionary genetics analysis for complete plastomes and diversification rate estimation of Deutzia and Philadelphus in tribe Philadelpheae (Hydrangeaceae)

inferred← citeshttps://doi.org/10.1371/journal.pone.0205402openalex-snapshot

Genotype by environment interaction for growth and Dothistroma resistance and clonal connectivity between environments in radiata pine in New Zealand and Australia

inferred← citeshttps://doi.org/10.1371/journal.pone.0218743openalex-snapshot

Plastid genome evolution in tribe Desmodieae (Fabaceae: Papilionoideae)

inferred← citeshttps://doi.org/10.1371/journal.pone.0225469openalex-snapshot

Complete Chloroplast Genomes of Vachellia nilotica and Senegalia senegal: Comparative Genomics and Phylogenomic Placement in a New Generic System

inferred← citeshttps://doi.org/10.1534/g3.118.200697openalex-snapshot

Deciphering Hybrid Larch Reaction Norms Using Random Regression

inferred← citeshttps://doi.org/10.1590/0103-8478cr20201054openalex-snapshot

Genotype plus genotype by-environment interaction biplot and genetic diversity analyses on multi-environment trials data of yield and technological traits of cotton cultivars

inferred← citeshttps://doi.org/10.21203/rs.2.14871/v1openalex-snapshot

Phylogenomics and biogeography of Wisteria (Fabaceae), with implication on plastome evolution of inverted repeat-lacking clade

inferred← citeshttps://doi.org/10.21203/rs.3.rs-3422232/v1openalex-snapshot

Comparative analysis of the complete plastid genomes of desert trees Neltuma and Strombocarpa genera

inferred← citeshttps://doi.org/10.30848/pjb2021-5(26)openalex-snapshot

Complete chloroplast genome of Eurya alata: a nectar shrub that blossoms in winter

inferred← citeshttps://doi.org/10.3389/fgene.2020.00763openalex-snapshot

Stable SNP Allele Associations With High Grain Zinc Content in Polished Rice (Oryza sativa L.) Identified Based on ddRAD Sequencing

inferred← citeshttps://doi.org/10.3389/fgene.2021.772415openalex-snapshot

Comparative Analysis of the Complete Chloroplast Genomes of Nine Paphiopedilum Species

inferred← citeshttps://doi.org/10.3389/fpls.2018.00138openalex-snapshot

Plastid Genome Evolution in the Early-Diverging Legume Subfamily Cercidoideae (Fabaceae)

inferred← citeshttps://doi.org/10.3389/fpls.2020.00151openalex-snapshot

New Insights Into the Plastome Evolution of the Millettioid/Phaseoloid Clade (Papilionoideae, Leguminosae)

inferred← citeshttps://doi.org/10.3389/fpls.2020.600354openalex-snapshot

Comparative Chloroplast Genomics of Corydalis Species (Papaveraceae): Evolutionary Perspectives on Their Unusual Large Scale Rearrangements

inferred← citeshttps://doi.org/10.3389/fpls.2021.587482openalex-snapshot

Identification of Promising RILs for High Grain Zinc Through Genotype × Environment Analysis and Stable Grain Zinc QTL Using SSRs and SNPs in Rice (Oryza sativa L.)

inferred← citeshttps://doi.org/10.3389/fpls.2021.705874openalex-snapshot

Comparative and Evolutionary Analyses on the Complete Plastomes of Five Kalanchoe Horticultural Plants

inferred← citeshttps://doi.org/10.3389/fpls.2021.743643openalex-snapshot

On the Species Delimitation of the Maddenia Group of Prunus (Rosaceae): Evidence From Plastome and Nuclear Sequences and Morphology

inferred← citeshttps://doi.org/10.3389/fpls.2021.754209openalex-snapshot

Variation and Evolution of the Whole Chloroplast Genomes of Fragaria spp. (Rosaceae)

inferred← citeshttps://doi.org/10.3389/fpls.2021.778933openalex-snapshot

Comparative Chloroplast Genomics of Sophora Species: Evolution and Phylogenetic Relationships in the Early-Diverging Legume Subfamily Papilionoideae (Fabaceae)

inferred← citeshttps://doi.org/10.3389/fpls.2022.1043740openalex-snapshot

Extensive reorganization of the chloroplast genome of Corydalis platycarpa: A comparative analysis of their organization and evolution with other Corydalis plastomes

inferred← citeshttps://doi.org/10.3389/fpls.2023.1258794openalex-snapshot

Chloroplast genome assembly of Serjania erecta Raldk: comparative analysis reveals gene number variation and selection in protein-coding plastid genes of Sapindaceae

inferred← citeshttps://doi.org/10.3389/fpls.2025.1673127openalex-snapshot

Dispersed repeats and inverted repeat expansion drive major plastomic rearrangements in Calliandra haematocephala (Leguminosae: Mimoseae)

inferred← citeshttps://doi.org/10.3390/biology11010063openalex-snapshot

Comparative and Phylogenetic Analysis of Complete Plastomes among Aristidoideae Species (Poaceae)

inferred← citeshttps://doi.org/10.3390/ijms19051286openalex-snapshot

Complete Chloroplast Genome of Cercis chuniana (Fabaceae) with Structural and Genetic Comparison to Six Species in Caesalpinioideae

inferred← citeshttps://doi.org/10.3390/ijms19082383openalex-snapshot

Phylogenomic and Comparative Analyses of Complete Plastomes of Croomia and Stemona (Stemonaceae)

inferred← citeshttps://doi.org/10.3390/plants9040543openalex-snapshot

Comparative Analysis of the Complete Plastid Genome of Five Bupleurum Species and New Insights into DNA Barcoding and Phylogenetic Relationship

inferred← citeshttps://doi.org/10.3390/plants9060737openalex-snapshot

Comparison of Chloroplast Genomes among Species of Unisexual and Bisexual Clades of the Monocot Family Araceae

inferred← citeshttps://doi.org/10.36103/mf941m18openalex-snapshot

COMPARATIVE ANALYSIS OF THE COMPLETE CHLOROPLAST GENOME OF THREE PROSOPIS SPECIES IN JORDAN

inferred← citeshttps://doi.org/10.70675/700e3b61zcba8z432cz9ecaz075c11e403aaopenalex-snapshot

Structural diversity and contrasted evolution of cytoplasmic genomes in flowering plants : a phylogenomic approach in Oleaceae

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