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Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

https://doi.org/10.1093/molbev/msq229
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Plastid translation and transcription genes in a non‐photosynthetic plant: intact, missing and pseudo genes.
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Structure, function, and inheritance of plastid genomes
inferredcites →https://doi.org/10.1007/978-1-4615-3276-7openalex-snapshot
Molecular Systematics of Plants
inferredcites →https://doi.org/10.1007/978-1-4615-3276-7_2openalex-snapshot
Use of Chloroplast DNA Rearrangements in Reconstructing Plant Phylogeny
inferredcites →https://doi.org/10.1007/978-3-540-75376-6openalex-snapshot
Cell and Molecular Biology of Plastids
inferredcites →https://doi.org/10.1007/978-4-431-68302-5_6openalex-snapshot
Recent Evidence for Evolution of the Genetic Code
inferredcites →https://doi.org/10.1007/bf00019119openalex-snapshot
Two copies of a DNA element, ?Wendy?, in the chloroplast chromosome of Chlamydomonas reinhardtii between rearranged gene clusters
inferredcites →https://doi.org/10.1007/bf00314450openalex-snapshot
A mutation hotspot in the chloroplast genome of a conifer (Douglas-fir: Pseudotsuga) is caused by variability in the number of direct repeats derived from a partially duplicated tRNA gene
inferredcites →https://doi.org/10.1007/bf00334780openalex-snapshot
Lack of a functional plastid tRNACys gene is associated with loss of photosynthesis in a lineage of parasitic plants
inferredcites →https://doi.org/10.1007/bf00339716openalex-snapshot
DNA supercoiling and temperature shift affect the promoter activity of the Escherichia coli rpoH gene encoding the heat-shock sigma subunit of RNA polymerase
inferredcites →https://doi.org/10.1007/bf00351704openalex-snapshot
Loss of transfer RNA genes from the plastid 16S–23S ribosomal RNA gene spacer in a parasitic plant
inferredcites →https://doi.org/10.1007/bf00391479openalex-snapshot
Dispersed repetitive sequences in the chloroplast genome of Douglas-fir
inferredcites →https://doi.org/10.1007/bf00422116openalex-snapshot
Pseudogenes and short repeated sequences in the rice chloroplast genome
inferredcites →https://doi.org/10.1007/bf00424430openalex-snapshot
Common features of three inversions in wheat chloroplast DNA
inferredcites →https://doi.org/10.1007/bf00434054openalex-snapshot
Organization and sequence of five tRNA genes and of an unidentified reading frame in the wheat chloroplast genome: evidence for gene rearrangements during the evolution of chloroplast genomes
inferredcites →https://doi.org/10.1007/bf00636479openalex-snapshot
The endpoints of an inversion in wheat chloroplast DNA are associated with short repeated sequences containing homology toatt-lambda
inferredcites →https://doi.org/10.1007/bf00838712openalex-snapshot
Variations in chloroplast DNA from rice (Oryza sativa): differences between deletions mediated by short direct-repeat sequences within a single species
inferredcites →https://doi.org/10.1007/bf00985731openalex-snapshot
The chloroplast genome arrangement ofLobelia thuliniana (Lobeliaceae): Expansion of the inverted repeat in an ancestor of theCampanulales
inferredcites →https://doi.org/10.1007/bf01936921openalex-snapshot
The genetic code in mitochondria and chloroplasts
inferredcites →https://doi.org/10.1007/bf02173220openalex-snapshot
Ebb and flow of the chloroplast inverted repeat
inferredcites →https://doi.org/10.1007/bf02464880openalex-snapshot
The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals
inferredcites →https://doi.org/10.1007/s00239-002-2333-yopenalex-snapshot
Nucleotide Substitution Rates in Legume Chloroplast DNA Depend on the Presence of the Inverted Repeat
inferredcites →https://doi.org/10.1007/s00239-008-9086-4openalex-snapshot
Extensive Rearrangements in the Chloroplast Genome of Trachelium caeruleum Are Associated with Repeats and tRNA Genes
inferredcites →https://doi.org/10.1007/s00239-008-9180-7openalex-snapshot
Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions
inferredcites →https://doi.org/10.1007/s002940050193openalex-snapshot
Short inverted repeats function as hotspots of intermolecular recombination giving rise to oligomers of deleted plastid DNAs (ptDNAs)
inferredcites →https://doi.org/10.1007/s002940050225openalex-snapshot
The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families
inferredcites →https://doi.org/10.1007/s00438-003-0859-6openalex-snapshot
An Arabidopsis homologue of bacterial RecA that complements an E. coli recA deletion is targeted to plant mitochondria
inferredcites →https://doi.org/10.1007/s10265-006-0055-yopenalex-snapshot
The chloroplast genome from a lycophyte (microphyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses
inferredcites →https://doi.org/10.1007/s11248-009-9246-3openalex-snapshot
Extensive homologous recombination between introduced and native regulatory plastid DNA elements in transplastomic plants
inferredcites →https://doi.org/10.1016/0092-8674(82)90170-2openalex-snapshot
Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost
inferredcites →https://doi.org/10.1016/0378-1119(89)90034-6openalex-snapshot
Group I introns as mobile genetic elements: Facts and mechanistic speculations — a review
inferredcites →https://doi.org/10.1016/0378-1119(90)90491-9openalex-snapshot
The ‘effective number of codons’ used in a gene
inferredcites →https://doi.org/10.1016/b978-0-12-715007-9.50009-8openalex-snapshot
Plastid Chromosomes: Structure and Evolution
inferredcites →https://doi.org/10.1016/b978-0-12-715007-9.x5001-4openalex-snapshot
The Molecular Biology of Plastids
inferredcites →https://doi.org/10.1016/j.ympev.2008.12.026openalex-snapshot
Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy
inferredcites →https://doi.org/10.1016/s0076-6879(05)95020-9openalex-snapshot
Methods for Obtaining and Analyzing Whole Chloroplast Genome Sequences
inferredcites →https://doi.org/10.1016/s0168-9525(99)01815-6openalex-snapshot
Gene-cluster analysis in chloroplast genomics
inferredcites →https://doi.org/10.1016/s0254-6299(15)30678-5openalex-snapshot
The taxonomic status of Sarcocaulon (Geraniaceae)
inferredcites →https://doi.org/10.1016/s0378-1119(97)00169-8openalex-snapshot
Organization of a large gene cluster encoding ribosomal proteins in the cyanobacterium Synechococcus sp. strain PCC 6301: comparison of gene clusters among cyanobacteria, eubacteria and chloroplast genomes
inferredcites →https://doi.org/10.1038/301092a0openalex-snapshot
Chloroplast DNA exists in two orientations
inferredcites →https://doi.org/10.1038/nsmb.1370openalex-snapshot
Superwobbling facilitates translation with reduced tRNA sets
inferredcites →https://doi.org/10.1073/pnas.0408302101openalex-snapshot
Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants
inferredcites →https://doi.org/10.1073/pnas.042694899openalex-snapshot
Punctuated evolution of mitochondrial gene content: High and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution
inferredcites →https://doi.org/10.1073/pnas.0604232103openalex-snapshot
Origins and evolution of the recA / RAD51 gene family: Evidence for ancient gene duplication and endosymbiotic gene transfer
inferredcites →https://doi.org/10.1073/pnas.0709121104openalex-snapshot
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
inferredcites →https://doi.org/10.1073/pnas.0806759105openalex-snapshot
Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions
inferredcites →https://doi.org/10.1073/pnas.0901710106openalex-snapshot
Whirly proteins maintain plastid genome stability in Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.84.3.769openalex-snapshot
Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families
inferredcites →https://doi.org/10.1073/pnas.85.22.8573openalex-snapshot
Intramolecular recombination of chloroplast genome mediated by short direct-repeat sequences in wheat species.
inferredcites →https://doi.org/10.1073/pnas.89.17.8068openalex-snapshot
A homolog of Escherichia coli RecA protein in plastids of higher plants.
inferredcites →https://doi.org/10.1073/pnas.89.5.1856openalex-snapshot
Structural rearrangements of the chloroplast genome provide an important phylogenetic link in ferns.
inferredcites →https://doi.org/10.1073/pnas.91.21.9794openalex-snapshot
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii.
inferredcites →https://doi.org/10.1073/pnas.94.11.5967openalex-snapshot
Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris : The existence of genes possibly involved in chloroplast division
inferredcites →https://doi.org/10.1079/9780851999043.0000openalex-snapshot
Plant diversity and evolution: genotypic and phenotypic variation in higher plants
inferredcites →https://doi.org/10.1079/9780851999043.0045openalex-snapshot
Chloroplast genomes of plants.
inferredcites →https://doi.org/10.1093/bioinformatics/bth352openalex-snapshot
Automatic annotation of organellar genomes with DOGMA
inferredcites →https://doi.org/10.1093/dnares/10.2.59openalex-snapshot
Complete Nucleotide Sequence of the Chloroplast Genome from a Leptosporangiate Fern, Adiantum capillus-veneris L.
inferredcites →https://doi.org/10.1093/genetics/150.1.425openalex-snapshot
A Subset of Conserved tRNA Genes in Plastid DNA of Nongreen Plants
inferredcites →https://doi.org/10.1093/jhered/90.3.333openalex-snapshot
The strange evolutionary history of plant mitochondrial tRNAs and their aminoacyl-tRNA synthetases
inferredcites →https://doi.org/10.1093/jxb/erq088openalex-snapshot
RecA maintains the integrity of chloroplast DNA molecules in Arabidopsis
inferredcites →https://doi.org/10.1093/molbev/msi174openalex-snapshot
Two Chloroplast DNA Inversions Originated Simultaneously During the Early Evolution of the Sunflower Family (Asteraceae)
inferredcites →https://doi.org/10.1093/molbev/msi182openalex-snapshot
The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages
inferredcites →https://doi.org/10.1093/molbev/msl089openalex-snapshot
The Complete Chloroplast Genome Sequence of Pelargonium × hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants
inferredcites →https://doi.org/10.1093/molbev/msm036openalex-snapshot
Gene Relocations within Chloroplast Genomes of Jasminum and Menodora (Oleaceae) Are Due to Multiple, Overlapping Inversions
inferredcites →https://doi.org/10.1093/molbev/msm059openalex-snapshot
Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants
inferredcites →https://doi.org/10.1093/nar/19.5.983openalex-snapshot
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
inferredcites →https://doi.org/10.1093/nar/gkl634openalex-snapshot
Tobacco plastid ribosomal protein S18 is essential for cell survival
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004201openalex-snapshot
Accounting for Background Nucleotide Composition When Measuring Codon Usage Bias
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040558openalex-snapshot
Dispersed repeats and structural reorganization in subclover chloroplast DNA.
inferredcites →https://doi.org/10.1101/gr.180501openalex-snapshot
Rapid Amplification of Plasmid and Phage DNA Using Phi29 DNA Polymerase and Multiply-Primed Rolling Circle Amplification
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High-Throughput Gene Mapping in Caenorhabditis elegans
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Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
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Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
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Consed: A Graphical Tool for Sequence Finishing
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TheChlamydomonas reinhardtiiPlastid Chromosome
inferredcites →https://doi.org/10.1105/tpc.106.048355openalex-snapshot
Plant Mitochondrial Recombination Surveillance Requires Unusual RecA and MutS Homologs
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Arabidopsis RecQl4A suppresses homologous recombination and modulates DNA damage responses
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Elimination of deleterious mutations in plastid genomes by gene conversion
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Recombination and the maintenance of plant organelle genome stability
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SIX INDEPENDENT LOSSES OF THE CHLOROPLAST DNArpl2 INTRON IN DICOTYLEDONS: MOLECULAR AND PHYLOGENETIC IMPLICATIONS
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Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
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Microbiology and Molecular Biology Reviews
inferredcites →https://doi.org/10.1146/annurev.arplant.46.1.549openalex-snapshot
Molecular Biology of Rhodophyte and Chromophyte Plastids
inferredcites →https://doi.org/10.1146/annurev.micro.57.030502.090953openalex-snapshot
The Bacterial RecA Protein as a Motor Protein
inferredcites →https://doi.org/10.1186/1471-2148-4-27openalex-snapshot
Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes
inferredcites →https://doi.org/10.1186/1471-2148-5-73openalex-snapshot
Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae
inferredcites →https://doi.org/10.1186/1471-2148-6-37openalex-snapshot
The complete chloroplast genome sequence of the chlorophycean green alga Scenedesmus obliquus reveals a compact gene organization and a biased distribution of genes on the two DNA strands
inferredcites →https://doi.org/10.1186/1471-2148-7-135openalex-snapshot
Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants
inferredcites →https://doi.org/10.1186/1471-2148-8-130openalex-snapshot
The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates
inferredcites →https://doi.org/10.1186/1471-2148-8-36openalex-snapshot
Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
inferredcites →https://doi.org/10.1186/1471-2148-9-130openalex-snapshot
Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes
inferredcites →https://doi.org/10.1186/1471-2164-8-174openalex-snapshot
Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus
inferredcites →https://doi.org/10.1186/1471-2229-7-45openalex-snapshot
Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii
inferredcites →https://doi.org/10.1186/1471-2229-7-57openalex-snapshot
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
inferredcites →https://doi.org/10.1186/1471-2229-8-70openalex-snapshot
Complete nucleotide sequence of the Cryptomeria japonicaD. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species
inferredcites →https://doi.org/10.1186/1741-7007-3-22openalex-snapshot
The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales
inferredcites →https://doi.org/10.1186/1741-7007-4-3openalex-snapshot
The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes
inferredcites →https://doi.org/10.1186/1741-7007-5-55openalex-snapshot
Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta(Convolvulaceae)
inferredcites →https://doi.org/10.1186/gb-2006-7-8-r75openalex-snapshot
Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species
inferredcites →https://doi.org/10.1371/journal.pone.0001386openalex-snapshot
Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene
inferredcites →https://doi.org/10.1371/journal.pone.0005982openalex-snapshot
Parallel Loss of Plastid Introns and Their Maturase in the Genus Cuscuta
inferredcites →https://doi.org/10.2144/00286ir01openalex-snapshot
The Sequence Manipulation Suite: JavaScript Programs for Analyzing and Formatting Protein and DNA Sequences
inferredcites →https://doi.org/10.2307/2399852openalex-snapshot
Phylogenetic Relationships of the Geraniaceae and Geraniales from rbcL Sequence Comparisons
inferredcites →https://doi.org/10.2307/2419583openalex-snapshot
Chloroplast DNA Evidence on the Origin and Radiation of the Giant Lobelias in Eastern Africa
inferredcites →https://doi.org/10.3732/ajb.94.3.302openalex-snapshot
A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Phylogenetics, character evolution and a subgeneric revision of the genus Pelargonium (Geraniaceae)
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Insight from newly sequenced chloroplast genome challenges the primitive position of Corydalis temulifolia (Papaveraceae)
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INSIGHTS INTO THE EVOLUTION OF THE CHLOROPLAST GENOME AND THE PHYLOGENY OF BEGONIA
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Evolutionary dynamics of the chloroplast genome in Daphne (Thymelaeaceae): comparative analysis with related genera and insights into phylogenetics
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Chloroplast Genome
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Chloroplast Genome
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Plastid structure and genomics
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Total duplication of the small single copy region in the angiosperm plastome: Rearrangement and inverted repeat instability in Asarum
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Plastid phylogenomics and molecular evolution of Thismiaceae (Dioscoreales)
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Complete plastome sequencing from Toona (Meliaceae) and phylogenomic analyses within Sapindales
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Comparative chloroplast genomes and phylogenetic analysis of Aquilegia
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Caught in the Act: Variation in plastid genome inverted repeat expansion within and between populations of Medicago minima
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Rampant intraspecific variation of plastid genomes in Gentiana section Chondrophyllae
inferred← citeshttps://doi.org/10.1002/ece3.70318openalex-snapshot
New insights on the phylogeny, evolutionary history, and ecological adaptation mechanism in cycle‐cup oaks based on chloroplast genomes
inferred← citeshttps://doi.org/10.1002/ece3.7312openalex-snapshot
Highly variable chloroplast genome from two endangered Papaveraceae lithophytes Corydalis tomentella and Corydalis saxicola
inferred← citeshttps://doi.org/10.1002/ece3.7381openalex-snapshot
Molecular evolution and SSRs analysis based on the chloroplast genome ofCallitropsis funebris
inferred← citeshttps://doi.org/10.1002/ece3.8499openalex-snapshot
Loss of the IR region in conifer plastomes: Changes in the selection pressure and substitution rate of protein‐coding genes
inferred← citeshttps://doi.org/10.1002/ece3.9730openalex-snapshot
Comparative analysis of chloroplast genomes of endangered heterostylous species Primula wilsonii and its closely related species
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Plastid Genomes of Flowering Plants: Essential Principles
inferred← citeshttps://doi.org/10.1007/978-1-4939-1136-3_18openalex-snapshot
Synthesis of Recombinant Products in the Chloroplast
inferred← citeshttps://doi.org/10.1007/978-1-62703-995-6_1openalex-snapshot
The Plastid Genomes of Flowering Plants
inferred← citeshttps://doi.org/10.1007/978-3-030-76649-8_9openalex-snapshot
Mitochondrial and Chloroplast Genomes
inferred← citeshttps://doi.org/10.1007/978-3-030-85239-9_71-1openalex-snapshot
Geraniaceae
inferred← citeshttps://doi.org/10.1007/978-3-030-93492-7_71openalex-snapshot
Geraniaceae
inferred← citeshttps://doi.org/10.1007/978-3-031-05584-3_7openalex-snapshot
Chloroplast Genome of Diospyros Species
inferred← citeshttps://doi.org/10.1007/978-3-031-80060-3_8openalex-snapshot
Harnessing Genetic Innovations in Geranium (Pelargonium spp.): A Journey Through Hybridization, Mutation, and Gene Editing
inferred← citeshttps://doi.org/10.1007/978-3-7091-1130-7_10openalex-snapshot
Plastid Genome Diversity
inferred← citeshttps://doi.org/10.1007/978-94-007-2920-9_5openalex-snapshot
Plastid Genomes of Seed Plants
inferred← citeshttps://doi.org/10.1007/978-981-16-6170-9_4openalex-snapshot
Plastogenomics Provides a Tool to Study Phylogenetic Interrelationships of Monilophytes: A Review
inferred← citeshttps://doi.org/10.1007/s00239-017-9792-xopenalex-snapshot
Plastome-Wide Nucleotide Substitution Rates Reveal Accelerated Rates in Papilionoideae and Correlations with Genome Features Across Legume Subfamilies
inferred← citeshttps://doi.org/10.1007/s00299-017-2231-zopenalex-snapshot
The Linum usitatissimum L. plastome reveals atypical structural evolution, new editing sites, and the phylogenetic position of Linaceae within Malpighiales
inferred← citeshttps://doi.org/10.1007/s00425-011-1494-9openalex-snapshot
Piecing together the puzzle of parasitic plant plastome evolution
inferred← citeshttps://doi.org/10.1007/s00425-018-2841-xopenalex-snapshot
The complete plastome of macaw palm [Acrocomia aculeata (Jacq.) Lodd. ex Mart.] and extensive molecular analyses of the evolution of plastid genes in Arecaceae
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Phylogenetic and evolutionary features of the plastome of Tropaeolum pentaphyllum Lam. (Tropaeolaceae)
inferred← citeshttps://doi.org/10.1007/s00425-022-03841-2openalex-snapshot
The plastome of Melocactus glaucescens Buining & Brederoo reveals unique evolutionary features and loss of essential tRNA genes
inferred← citeshttps://doi.org/10.1007/s00425-025-04884-xopenalex-snapshot
Molecular evolution and comparative genomics of highly threatened Malagasy rosewoods (Dalbergia, Fabaceae) unveil genome diversity and a fine-scale evolutionary framework
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Plastid genome structure and phylogenomics of Nymphaeales: conserved gene order and new insights into relationships
inferred← citeshttps://doi.org/10.1007/s00606-017-1472-1openalex-snapshot
Sequencing of the plastome in the leafless green mycoheterotroph Cymbidium macrorhizon helps us to understand an early stage of fully mycoheterotrophic plastome structure
inferred← citeshttps://doi.org/10.1007/s00606-025-01942-5openalex-snapshot
Comparative analysis of the complete chloroplast genomes of critically endangered legumes (Dalbergia, Papilionoideae): insights into genome structure, phylogeny, and conservation implications
inferred← citeshttps://doi.org/10.1007/s00606-026-02023-xopenalex-snapshot
Comparative plastid genomics of five Ormosia species (fabaceae): insights into structural variation and morphological homoplasy
inferred← citeshttps://doi.org/10.1007/s00709-020-01585-yopenalex-snapshot
Complete chloroplast genomes of Chinese wild-growing Vitis species: molecular structures and comparative and adaptive radiation analysis
inferred← citeshttps://doi.org/10.1007/s10142-025-01596-zopenalex-snapshot
Mitochondrial genome evolution in the orchid subfamily Cypripedioideae (Orchidaceae)
inferred← citeshttps://doi.org/10.1007/s10265-018-1077-yopenalex-snapshot
Full plastome sequence of the fern Vandenboschia speciosa (Hymenophyllales): structural singularities and evolutionary insights
inferred← citeshttps://doi.org/10.1007/s10528-025-11229-6openalex-snapshot
Unraveling the Chloroplast Genome of Stellaria media: Comprehensive Analysis, Taxonomic Implications, and Evolutionary Perspectives
inferred← citeshttps://doi.org/10.1007/s10535-017-0759-yopenalex-snapshot
The complete chloroplast genome sequence of Pseudoroegneria libanotica, genomic features, and phylogenetic relationship with Triticeae species
inferred← citeshttps://doi.org/10.1007/s10709-022-00169-3openalex-snapshot
The complete chloroplast genome of two Firmiana species and comparative analysis with other related species
inferred← citeshttps://doi.org/10.1007/s10722-012-9844-4openalex-snapshot
Diversity and evolution of major Panax species revealed by scanning the entire chloroplast intergenic spacer sequences
inferred← citeshttps://doi.org/10.1007/s10722-021-01235-zopenalex-snapshot
Chloroplast derived SSRs reveals genetic relationships in domesticated alliums and wild relatives
inferred← citeshttps://doi.org/10.1007/s10722-024-02002-6openalex-snapshot
The chloroplast genome of Camellia sinensis var. assamica cv. Duntsa (Theaceae) and comparative genome analysis: mutational hotspots and phylogenetic relationships
inferred← citeshttps://doi.org/10.1007/s10722-024-02292-wopenalex-snapshot
Complete chloroplast genomes of 19 species of Pedicularis (Orobanchaceae): comparative genome and phylogenetic analysis
inferred← citeshttps://doi.org/10.1007/s10722-025-02531-8openalex-snapshot
Unraveling genetic relationships among Arachis species (Fabaceae) with a basic chromosome number of x = 9 through complete chloroplast genome analysis
inferred← citeshttps://doi.org/10.1007/s11033-024-09871-1openalex-snapshot
The plastomes of Lepismium cruciforme (Vell.) Miq and Schlumbergera truncata (Haw.) Moran reveal tribe-specific rearrangements and the first loss of the trnT-GGU gene in Cactaceae
inferred← citeshttps://doi.org/10.1007/s11103-011-9753-5openalex-snapshot
Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)
inferred← citeshttps://doi.org/10.1007/s11103-011-9762-4openalex-snapshot
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
inferred← citeshttps://doi.org/10.1007/s11103-022-01266-9openalex-snapshot
Cytonuclear coevolution in a holoparasitic plant with highly disparate organellar genomes
inferred← citeshttps://doi.org/10.1007/s11103-024-01440-1openalex-snapshot
Variations and reduction of plastome are associated with the evolution of parasitism in Convolvulaceae
inferred← citeshttps://doi.org/10.1007/s11105-014-0833-yopenalex-snapshot
The Largest Plastid Genome of Monocots: a Novel Genome Type Containing AT Residue Repeats in the Slipper Orchid Cypripedium japonicum
inferred← citeshttps://doi.org/10.1007/s11295-017-1124-1openalex-snapshot
Plastomes of Mimosoideae: structural and size variation, sequence divergence, and phylogenetic implication
inferred← citeshttps://doi.org/10.1007/s11295-017-1131-2openalex-snapshot
Diversity and evolution of plastomes in Saharan mimosoids: potential use for phylogenetic and population genetic studies
inferred← citeshttps://doi.org/10.1007/s11676-019-01088-4openalex-snapshot
Structural characterization and comparative analysis of the chloroplast genome of Ginkgo biloba and other gymnosperms
inferred← citeshttps://doi.org/10.1007/s11738-022-03425-3openalex-snapshot
Complete chloroplast genome sequence and variation analysis of Brassica oleracea L.
inferred← citeshttps://doi.org/10.1007/s11816-025-01041-4openalex-snapshot
Evolutionary insights from the Rosa bella chloroplast genome: codon usage bias, nucleotide diversity, and phylogeny
inferred← citeshttps://doi.org/10.1007/s12033-025-01383-yopenalex-snapshot
Decoding the Chloroplast Genome of Korean endemic plant Acer okamotoanum: Comparative Genomics, Phylogenetic Insights, and Potential for Marker Development
inferred← citeshttps://doi.org/10.1007/s12298-023-01312-wopenalex-snapshot
Decoding the complete chloroplast genome of Cissus quadrangularis: insights into molecular structure, comparative genome analysis and mining of mutational hotspot regions
inferred← citeshttps://doi.org/10.1007/s13205-019-2020-1openalex-snapshot
Analysis of complete chloroplast genome sequence of Korean landrace Cymbidium goeringii
inferred← citeshttps://doi.org/10.1007/s40415-020-00689-2openalex-snapshot
Genetic and evolutionary analyses of plastomes of the subfamily Cactoideae (Cactaceae) indicate relaxed protein biosynthesis and tRNA import from cytosol
inferred← citeshttps://doi.org/10.1007/s40415-023-00969-7openalex-snapshot
Chloroplast genome sequence of Begonia asteropyrifolia and comparative analysis with other related species
inferred← citeshttps://doi.org/10.1016/bs.abr.2017.11.010openalex-snapshot
Evolution of the Plastid Genome in Green Algae
inferred← citeshttps://doi.org/10.1016/bs.abr.2017.11.013openalex-snapshot
Structural Diversity Among Plastid Genomes of Land Plants
inferred← citeshttps://doi.org/10.1016/bs.abr.2017.11.017openalex-snapshot
Aberration or Analogy? The Atypical Plastomes of Geraniaceae
inferred← citeshttps://doi.org/10.1016/j.bbalip.2016.04.004openalex-snapshot
Regulation and structure of the heteromeric acetyl-CoA carboxylase
inferred← citeshttps://doi.org/10.1016/j.gene.2019.144154openalex-snapshot
Complete plastome sequencing of Allium paradoxum reveals unusual rearrangements and the loss of the ndh genes as compared to Allium ursinum and other onions
inferred← citeshttps://doi.org/10.1016/j.gene.2024.149086openalex-snapshot
The plastomes of Cypripedium (Orchidaceae: Cypripedioideae) exhibit atypical GC content and genome size based on different sequencing strategies
inferred← citeshttps://doi.org/10.1016/j.gene.2025.149324openalex-snapshot
Chloroplast-nuclear genome interaction drives asymmetric inverted repeats in chloroplast genome of Huperzia
inferred← citeshttps://doi.org/10.1016/j.japb.2025.01.004openalex-snapshot
Complete chloroplast genome of Physochlaina infundibularis Kuang (Hyoscyameae: Solanaceae): Comparative and phylogenetic analysis
inferred← citeshttps://doi.org/10.1016/j.pld.2018.04.003openalex-snapshot
Plastome characteristics of Cannabaceae
inferred← citeshttps://doi.org/10.1016/j.pld.2018.06.005openalex-snapshot
Plant phylogenomics based on genome-partitioning strategies: Progress and prospects
inferred← citeshttps://doi.org/10.1016/j.pld.2022.06.002openalex-snapshot
Plastome characteristics and species identification of Chinese medicinal wintergreens (Gaultheria, Ericaceae)
inferred← citeshttps://doi.org/10.1016/j.plgene.2024.100486openalex-snapshot
Evolutionary dynamics of Senna: Perspectives from plastome evolution and phylogenomics
inferred← citeshttps://doi.org/10.1016/j.xplc.2026.101783openalex-snapshot
Editing and synthetic engineering of chloroplast genomes
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.05.027openalex-snapshot
Chloroplast gene arrangement variation within a closely related group of green algae (Trebouxiophyceae, Chlorophyta)
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.12.004openalex-snapshot
A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.06.013openalex-snapshot
The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.03.012openalex-snapshot
Species-level phylogeny, fruit evolution and diversification history of Geranium (Geraniaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.01.004openalex-snapshot
Plastid phylogenomics resolves infrafamilial relationships of the Styracaceae and sheds light on the backbone relationships of the Ericales
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.04.015openalex-snapshot
Comparative chloroplast genomics between the invasive weed Mikania micrantha and its indigenous congener Mikania cordata: Structure variation, identification of highly divergent regions, divergence time estimation, and phylogenetic analysis
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.12.012openalex-snapshot
Enlarged and highly repetitive plastome of Lagarostrobos and plastid phylogenomics of Podocarpaceae
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.03.021openalex-snapshot
Plastome based phylogenetics and younger crown node age in Pelargonium
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.05.030openalex-snapshot
Highly accelerated rates of genomic rearrangements and nucleotide substitutions in plastid genomes of Passiflora subgenus Decaloba
inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106986openalex-snapshot
Extensive variation in nucleotide substitution rate and gene/intron loss in mitochondrial genomes of Pelargonium
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107171openalex-snapshot
Plastid genomes and phylogenomics of liverworts (Marchantiophyta): Conserved genome structure but highest relative plastid substitution rate in land plants
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107688openalex-snapshot
Evolution of 101 Apocynaceae plastomes and phylogenetic implications
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107760openalex-snapshot
Rate accelerations in plastid and mitochondrial genomes of Cyperaceae occur in the same clades
inferred← citeshttps://doi.org/10.1038/s41438-019-0171-1openalex-snapshot
Comparative analysis of the complete chloroplast genome among Prunus mume, P. armeniaca, and P. salicina
inferred← citeshttps://doi.org/10.1038/s41598-017-01144-1openalex-snapshot
Divergent copies of the large inverted repeat in the chloroplast genomes of ulvophycean green algae
inferred← citeshttps://doi.org/10.1038/s41598-017-02076-6openalex-snapshot
The complete chloroplast genome sequence of tung tree (Vernicia fordii): Organization and phylogenetic relationships with other angiosperms
inferred← citeshttps://doi.org/10.1038/s41598-018-31938-wopenalex-snapshot
Reconfiguration of the plastid genome in Lamprocapnos spectabilis: IR boundary shifting, inversion, and intraspecific variation
inferred← citeshttps://doi.org/10.1038/s41598-019-57249-2openalex-snapshot
Phylogenetic informativeness analyses to clarify past diversification processes in Cucurbitaceae
inferred← citeshttps://doi.org/10.1038/s41598-020-68000-7openalex-snapshot
The dynamic evolution of mobile open reading frames in plastomes of Hymenophyllum Sm. and new insight on Hymenophyllum coreanum Nakai
inferred← citeshttps://doi.org/10.1038/s41598-020-68092-1openalex-snapshot
Molecular markers from the chloroplast genome of rose provide a complementary tool for variety discrimination and profiling
inferred← citeshttps://doi.org/10.1038/s41598-021-99178-zopenalex-snapshot
Calophyllaceae plastomes, their structure and insights in relationships within the clusioids
inferred← citeshttps://doi.org/10.1038/s41598-022-17721-yopenalex-snapshot
Phylogenetic analysis based on single-copy orthologous proteins in highly variable chloroplast genomes of Corydalis
inferred← citeshttps://doi.org/10.1038/s41598-022-26884-7openalex-snapshot
Complete chloroplast genomes and comparative analysis of Ligustrum species
inferred← citeshttps://doi.org/10.1038/s41598-023-39403-zopenalex-snapshot
Comparative chloroplast genomics and insights into the molecular evolution of Tanaecium (Bignonieae, Bignoniaceae)
inferred← citeshttps://doi.org/10.1038/s41598-023-44599-1openalex-snapshot
The complete chloroplast genome of Cicer reticulatum and comparative analysis against relative Cicer species
inferred← citeshttps://doi.org/10.1038/s41598-024-58934-7openalex-snapshot
Phylogenetic relationships, selective pressure and molecular markers development of six species in subfamily Polygonoideae based on complete chloroplast genomes
inferred← citeshttps://doi.org/10.1038/s41598-024-65154-6openalex-snapshot
Phylogenomic analysis and dynamic evolution of chloroplast genomes of Clematis nannophylla
inferred← citeshttps://doi.org/10.1038/s41598-024-71956-5openalex-snapshot
Chloroplast genomes of Simarouba Aubl., molecular evolution and comparative analyses within Sapindales
inferred← citeshttps://doi.org/10.1038/s41598-025-22748-yopenalex-snapshot
RETRACTED ARTICLE: Comparative plastome analysis of Schweinfurthia papilionacea and Schweinfurthia imbricata clarifying their taxonomic position in Lamiales
inferred← citeshttps://doi.org/10.1038/srep16958openalex-snapshot
Mimosoid legume plastome evolution: IR expansion, tandem repeat expansions and accelerated rate of evolution in clpP
inferred← citeshttps://doi.org/10.1038/srep24595openalex-snapshot
Divergence of RNA polymerase α subunits in angiosperm plastid genomes is mediated by genomic rearrangement
inferred← citeshttps://doi.org/10.1038/srep30042openalex-snapshot
Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives
inferred← citeshttps://doi.org/10.1073/pnas.1403363111openalex-snapshot
The dynamic history of plastid genomes in the Campanulaceae sensu lato is unique among angiosperms
inferred← citeshttps://doi.org/10.1080/23802359.2023.2290850openalex-snapshot
The complete plastome genome sequence of Cynanchum otophyllum (Asclepiadaceae), a unique medicinal species in China
inferred← citeshttps://doi.org/10.1080/23802359.2024.2419962openalex-snapshot
The complete chloroplast genome of Erodium stephanianum (Geraniaceae)
inferred← citeshttps://doi.org/10.1080/23802359.2024.2420847openalex-snapshot
The complete chloroplast genome of Erodium cicutarium (Linnaeus) l’ Héritier ex Aiton 1789 (Geraniaceae): genome characterization and phylogenetic consideration
inferred← citeshttps://doi.org/10.1093/aob/mcad098openalex-snapshot
More than a spiny morphology: plastome variation in the prickly pear cacti (Opuntieae)
inferred← citeshttps://doi.org/10.1093/aob/mcu050openalex-snapshot
The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family
inferred← citeshttps://doi.org/10.1093/aob/mcw065openalex-snapshot
Variable presence of the inverted repeat and plastome stability inErodium
inferred← citeshttps://doi.org/10.1093/aob/mcw135openalex-snapshot
Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasiteCytinus hypocistis(Cytinaceae)
inferred← citeshttps://doi.org/10.1093/aobpla/plac008openalex-snapshot
Phylogenetic position of Ligusticopsis (Apiaceae, Apioideae): evidence from molecular data and carpological characters
inferred← citeshttps://doi.org/10.1093/biolinnean/blaa212openalex-snapshot
Refugia within refugium ofGeranium yesoense(Geraniaceae) in Japan were driven by recolonization into the southern interglacial refugium
inferred← citeshttps://doi.org/10.1093/biolinnean/blad121openalex-snapshot
Refugia within refugium of Geranium yesoense varieties: a follow-up study using chloroplast genome sequencing data of specimens from Mt. Asama, Japan
inferred← citeshttps://doi.org/10.1093/botlinnean/boaa056openalex-snapshot
Reconstructing plastome evolution across the phylogenetic backbone of the parasitic plant genusCuscuta(Convolvulaceae)
inferred← citeshttps://doi.org/10.1093/dnares/dsu007openalex-snapshot
Two Distinct Plastid Genome Configurations and Unprecedented Intraspecies Length Variation in the accD Coding Region in Medicago truncatula
inferred← citeshttps://doi.org/10.1093/dnares/dsx006openalex-snapshot
The evolutionary fate of the chloroplast and nuclear rps16 genes as revealed through the sequencing and comparative analyses of four novel legume chloroplast genomes from Lupinus
inferred← citeshttps://doi.org/10.1093/gbe/evaa076openalex-snapshot
Unprecedented Intraindividual Structural Heteroplasmy in Eleocharis (Cyperaceae, Poales) Plastomes
inferred← citeshttps://doi.org/10.1093/gbe/evaa155openalex-snapshot
A Repertory of Rearrangements and the Loss of an Inverted Repeat Region in Passiflora Chloroplast Genomes
inferred← citeshttps://doi.org/10.1093/gbe/evab215openalex-snapshot
Plastome Structural Evolution and Homoplastic Inversions in Neo-Astragalus (Fabaceae)
inferred← citeshttps://doi.org/10.1093/gbe/evaf074openalex-snapshot
Six Newly Sequenced Chloroplast Genomes From Quadriflagellate Chlamydomonadales (Chlorophyceae): Phylogeny and Comparative Genome Analyses
inferred← citeshttps://doi.org/10.1093/gbe/evr026openalex-snapshot
Comparative Chloroplast Genomes of Pinaceae: Insights into the Mechanism of Diversified Genomic Organizations
inferred← citeshttps://doi.org/10.1093/gbe/evr037openalex-snapshot
The Chloroplast Genome of the Green Alga Schizomeris leibleinii (Chlorophyceae) Provides Evidence for Bidirectional DNA Replication from a Single Origin in the Chaetophorales
inferred← citeshttps://doi.org/10.1093/gbe/evr095openalex-snapshot
Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny
inferred← citeshttps://doi.org/10.1093/gbe/evs006openalex-snapshot
Recent Acceleration of Plastid Sequence and Structural Evolution Coincides with Extreme Mitochondrial Divergence in the Angiosperm Genus Silene
inferred← citeshttps://doi.org/10.1093/gbe/evt063openalex-snapshot
Sequencing Angiosperm Plastid Genomes Made Easy: A Complete Set of Universal Primers and a Case Study on the Phylogeny of Saxifragales
inferred← citeshttps://doi.org/10.1093/gbe/evu001openalex-snapshot
The Plastid Genome of Mycoheterotrophic Monocot Petrosavia stellaris Exhibits Both Gene Losses and Multiple Rearrangements
inferred← citeshttps://doi.org/10.1093/gbe/evu039openalex-snapshot
Serial Gene Losses and Foreign DNA Underlie Size and Sequence Variation in the Plastid Genomes of Diatoms
inferred← citeshttps://doi.org/10.1093/gbe/evu061openalex-snapshot
Analyses of Charophyte Chloroplast Genomes Help Characterize the Ancestral Chloroplast Genome of Land Plants
inferred← citeshttps://doi.org/10.1093/gbe/evu165openalex-snapshot
Ancient Nuclear Plastid DNA in the Yew Family (Taxaceae)
inferred← citeshttps://doi.org/10.1093/gbe/evv130openalex-snapshot
Dynamic Evolution of the Chloroplast Genome in the Green Algal Classes Pedinophyceae and Trebouxiophyceae
inferred← citeshttps://doi.org/10.1093/gbe/evv165openalex-snapshot
Plastome Evolution in Hemiparasitic Mistletoes
inferred← citeshttps://doi.org/10.1093/gbe/evv256openalex-snapshot
Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic PlantHydnora visseri(Hydnoraceae)
inferred← citeshttps://doi.org/10.1093/gbe/evw033openalex-snapshot
Coevolution between Nuclear-Encoded DNA Replication, Recombination, and Repair Genes and Plastid Genome Complexity
inferred← citeshttps://doi.org/10.1093/gbe/evw109openalex-snapshot
Birth of Four Chimeric Plastid Gene Clusters in Japanese Umbrella Pine
inferred← citeshttps://doi.org/10.1093/gbe/evw115openalex-snapshot
Plastid–Nuclear Interaction and Accelerated Coevolution in Plastid Ribosomal Genes in Geraniaceae
inferred← citeshttps://doi.org/10.1093/gbe/evw190openalex-snapshot
Mitochondrion-to-Chloroplast DNA Transfers and Intragenomic Proliferation of Chloroplast Group II Introns inGloeotilopsisGreen Algae (Ulotrichales, Ulvophyceae)
inferred← citeshttps://doi.org/10.1093/gbe/evw271openalex-snapshot
Genus-wide screening reveals four distinct types of structural plastid genome organization in Pelargonium (Geraniaceae)
inferred← citeshttps://doi.org/10.1093/gbe/evw278openalex-snapshot
Large-Scale Comparative Analysis Reveals the Mechanisms Driving Plastomic Compaction, Reduction, and Inversions in Conifers II (Cupressophytes)
inferred← citeshttps://doi.org/10.1093/gbe/evx010openalex-snapshot
Causes and Consequences of Rapidly Evolving mtDNA in a Plant Lineage
inferred← citeshttps://doi.org/10.1093/gbe/evx071openalex-snapshot
Insights into the Existence of Isomeric Plastomes in Cupressoideae (Cupressaceae)
inferred← citeshttps://doi.org/10.1093/gbe/evx124openalex-snapshot
Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium
inferred← citeshttps://doi.org/10.1093/gbe/evx180openalex-snapshot
Evolutionary Comparisons of the Chloroplast Genome in Lauraceae and Insights into Loss Events in the Magnoliids
inferred← citeshttps://doi.org/10.1093/gbe/evy189openalex-snapshot
Mobile Elements Shape Plastome Evolution in Ferns
inferred← citeshttps://doi.org/10.1093/gbe/evz073openalex-snapshot
The Unique Evolutionary Trajectory and Dynamic Conformations of DR and IR/DR-Coexisting Plastomes of the Early Vascular Plant Selaginellaceae (Lycophyte)
inferred← citeshttps://doi.org/10.1093/gbe/evz076openalex-snapshot
Lost and Found: Return of the Inverted Repeat in the Legume Clade Defined by Its Absence
inferred← citeshttps://doi.org/10.1093/gbe/evz187openalex-snapshot
Plastome Reduction in the Only Parasitic Gymnosperm Parasitaxus Is Due to Losses of Photosynthesis but Not Housekeeping Genes and Apparently Involves the Secondary Gain of a Large Inverted Repeat
inferred← citeshttps://doi.org/10.1093/hr/uhae009openalex-snapshot
Leaf variegation caused by plastome structural variation: an example from Dianella tasmanica
inferred← citeshttps://doi.org/10.1093/molbev/mst144openalex-snapshot
Split Photosystem Protein, Linear-Mapping Topology, and Growth of Structural Complexity in the Plastid Genome of Chromera velia
inferred← citeshttps://doi.org/10.1093/molbev/mst257openalex-snapshot
Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates
inferred← citeshttps://doi.org/10.1093/molbev/mst261openalex-snapshot
Disproportional Plastome-Wide Increase of Substitution Rates and Relaxed Purifying Selection in Genes of Carnivorous Lentibulariaceae
inferred← citeshttps://doi.org/10.1093/molbev/msy176openalex-snapshot
High and Variable Rates of Repeat-Mediated Mitochondrial Genome Rearrangement in a Genus of Plants
inferred← citeshttps://doi.org/10.1093/plcell/koab021openalex-snapshot
Genome-wide signatures of plastid-nuclear coevolution point to repeated perturbations of plastid proteostasis systems across angiosperms
inferred← citeshttps://doi.org/10.1097/hm9.0000000000000133openalex-snapshot
Chloroplast genome characterization and divergence time estimation of Persicaria capitata
inferred← citeshttps://doi.org/10.1101/040188openalex-snapshot
Conserved gene clusters in the scrambled plastomes of IRLC legumes (Fabaceae: Trifolieae and Fabeae)
inferred← citeshttps://doi.org/10.1101/271221openalex-snapshot
The contraction in inverted repeat regions in the complete plastome sequence of Cressa cretica L
inferred← citeshttps://doi.org/10.1104/pp.113.214528openalex-snapshot
Potential Functional Replacement of the Plastidic Acetyl-CoA Carboxylase Subunit (accD) Gene by Recent Transfers to the Nucleus in Some Angiosperm Lineages
inferred← citeshttps://doi.org/10.1104/pp.114.249052openalex-snapshot
Natural Variation in Sensitivity to a Loss of Chloroplast Translation in Arabidopsis
inferred← citeshttps://doi.org/10.1105/tpc.113.113373openalex-snapshot
Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family
inferred← citeshttps://doi.org/10.1111/bij.12297openalex-snapshot
Calibrated chronograms, fossils, outgroup relationships, and root priors: re-examining the historical biogeography of Geraniales
inferred← citeshttps://doi.org/10.1111/cla.12417openalex-snapshot
A bi‐organellar phylogenomic study of Pandanales: inference of higher‐order relationships and unusual rate‐variation patterns
inferred← citeshttps://doi.org/10.1111/jpy.12811openalex-snapshot
Flip‐flop organization in the chloroplast genome of Capsosiphon fulvescens (Ulvophyceae, Chlorophyta)
inferred← citeshttps://doi.org/10.1111/jse.12179openalex-snapshot
Plastid genome sequences of legumes reveal parallel inversions and multiple losses ofrps16in papilionoids
inferred← citeshttps://doi.org/10.1111/jse.12246openalex-snapshot
Phylogenomic analysis of Picramnia, Alvaradoa, and Leitneria supports the independent Picramniales
inferred← citeshttps://doi.org/10.1111/jse.12425openalex-snapshot
Passifloraplastome sequencing reveals widespread genomic rearrangements
inferred← citeshttps://doi.org/10.1111/jse.12733openalex-snapshot
Phylogenomics and biogeography of Wisteria: Implications on plastome evolution among inverted repeat‐lacking clade (IRLC) legumes
inferred← citeshttps://doi.org/10.1111/jse.70015openalex-snapshot
Plastome evolution in the Caesalpinia group (Caesalpinioideae, Fabaceae): Comparative genomics reveals genome dynamics, phylogenetic insights and adaptive evolution
inferred← citeshttps://doi.org/10.1111/njb.01921openalex-snapshot
Remarkably conserved plastid genomes of Quercus group Cerris in China: comparative and phylogenetic analyses
inferred← citeshttps://doi.org/10.1111/njb.04526openalex-snapshot
Complete chloroplast genomes of Desmidorchis penicillata (Deflers) plowes and Desmidorchis retrospiciens Ehrenb.: comparative and phylogenetic analyses among subtribe Stapeliinae (Ceropegieae, Asclepiadoideae, Apocynaceae)
inferred← citeshttps://doi.org/10.1111/nph.13743openalex-snapshot
Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates
inferred← citeshttps://doi.org/10.1111/nph.14375openalex-snapshot
Expansion of inverted repeat does not decrease substitution rates in Pelargonium plastid genomes
inferred← citeshttps://doi.org/10.1111/nph.14681openalex-snapshot
On the brink: the highly reduced plastomes of nonphotosynthetic Ericaceae
inferred← citeshttps://doi.org/10.1111/nph.70364openalex-snapshot
Beyond conservation: the landscape of chloroplast genome rearrangements in angiosperms
inferred← citeshttps://doi.org/10.1111/pbi.12141openalex-snapshot
Highly rearranged and size‐variable chloroplast genomes in conifers II clade (cupressophytes): evolution towards shorter intergenic spacers
inferred← citeshttps://doi.org/10.1111/pbi.12179openalex-snapshot
Evolutionary and biotechnology implications of plastid genome variation in the inverted‐repeat‐lacking clade of legumes
inferred← citeshttps://doi.org/10.1111/tpj.13491openalex-snapshot
What can we do with 1000 plastid genomes?
inferred← citeshttps://doi.org/10.1111/tpj.15028openalex-snapshot
Distinctive evolutionary pattern of organelle genomes linked to the nuclear genome in Selaginellaceae
inferred← citeshttps://doi.org/10.1111/tpj.15351openalex-snapshot
The chicken or the egg? Plastome evolution and an independent loss of the inverted repeat in papilionoid legumes
inferred← citeshttps://doi.org/10.1111/tpj.15851openalex-snapshot
The evolution of extremely diverged plastomes in Selaginellaceae (lycophyte) is driven by repeat patterns and the underlying DNA maintenance machinery
inferred← citeshttps://doi.org/10.1134/s1022795414010104openalex-snapshot
Molecular phylogenetic analysis of the genus Abies (Pinaceae) based on the nucleotide sequence of chloroplast DNA
inferred← citeshttps://doi.org/10.1134/s2079086425600353openalex-snapshot
De Novo Plastome Assembly and Comparative Genomics of Elatostema lineolatum var. major: Insights into Urticaceae Orthologs, Phylogeny, and Comparative Analysis of 242 Plastomes
inferred← citeshttps://doi.org/10.1139/gen-2021-0080openalex-snapshot
Complete chloroplast genome of Gentianopsis barbata and comparative analysis with related species from Gentianaceae
inferred← citeshttps://doi.org/10.1142/9781786340580_0001openalex-snapshot
Symbiosis Involving Photosynthetic Organisms
inferred← citeshttps://doi.org/10.1155/2019/5190425openalex-snapshot
Analyzing and Characterizing the Chloroplast Genome of Salix wilsonii
inferred← citeshttps://doi.org/10.1155/2020/9014873openalex-snapshot
Complete Chloroplast Genome Sequence of Chinese Lacquer Tree (Toxicodendron vernicifluum, Anacardiaceae) and Its Phylogenetic Significance
inferred← citeshttps://doi.org/10.1155/2022/3909596openalex-snapshot
Comparative Plastome Analysis of Three Amaryllidaceae Subfamilies: Insights into Variation of Genome Characteristics, Phylogeny, and Adaptive Evolution
inferred← citeshttps://doi.org/10.11606/t.11.2020.tde-04062020-160041openalex-snapshot
Chloroplast genome evolution in >i /i<
inferred← citeshttps://doi.org/10.1177/00368504241272741openalex-snapshot
Comparative genomics revealed new insights into the plastome evolution of Ludwigia (Onagraceae, Myrtales)
inferred← citeshttps://doi.org/10.1186/1471-2148-13-8openalex-snapshot
Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes
inferred← citeshttps://doi.org/10.1186/1471-2148-14-23openalex-snapshot
From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
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