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A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

https://doi.org/10.1016/j.cell.2022.01.012

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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← backgroundhttps://doi.org/10.5281/zenodo.17607826zenodo-depositor-declared

inferred← backgroundhttps://doi.org/10.5281/zenodo.6120249zenodo-depositor-declared

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Diagnosis of Neurological Disease Using Bioinspired Algorithms

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Vaccination does not affect leukocyte morphologic abnormalities of severe COVID ‐19

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Analysis of comprehensive biomolecules in critically ill patients via bioinformatics technologies

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High‐Dimensional Spectral Flow Cytometry Panel for Immunophenotypic Characterization of Fixed Whole Blood Samples

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Type I Interferon Drives a Cellular State Inert to TCR‐Stimulation and Could Impede Effective T‐Cell Differentiation in Cancer

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Human Systems Immunology in the Omics Era: Challenges, Methods, and Emerging Directions

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Prenatal Diagnosis and Management of Congenital Tracheal Stenosis

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Interferon‐responsive neutrophils and macrophages extricate SARS‐CoV‐2 Omicron critical patients from the nasty fate of sepsis

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Proteomic Analysis of 442 Clinical Plasma Samples From Individuals With Symptom Records Revealed Subtypes of Convalescent Patients Who Had COVID‐19

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Myeloid‐Driven Immune Suppression Subverts Neutralizing Antibodies and T Cell Immunity in Severe COVID‐19

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Proteomics and Phosphoproteomics Characteristics of the Rhesus Macaque Lung Infected With Original SARS‐CoV‐2, Delta, and Omicron Variants

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Multiorgan Molecular Landscape of Severe COVID‐19 Revealed by Consensus Gene Signatures and RAB8B Targeting

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Single‐cell transcriptomic atlas of distinct early immune responses induced by SARS‐CoV‐2 Proto or its variants in rhesus monkey

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Plasma proteomics identify potential severity biomarkers from COVID‐19 associated network

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SARS-CoV2 infection in whole lung primarily targets macrophages that display subset-specific responses

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Whole blood transcriptome signature predicts severe forms of COVID-19: Results from the COVIDeF cohort study

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Atypical B cells and impaired SARS-CoV-2 neutralization following heterologous vaccination in the elderly

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Type I interferon-activated myeloid states are associated with less fibrotic stages in idiopathic pulmonary fibrosis

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Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature

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A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort

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SynchDP: A correlation based sequence alignment algorithm for synchronizing longitudinal clinical data

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Early peripheral blood MCEMP1 and HLA-DRA expression predicts COVID-19 prognosis

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Secondary influenza challenge triggers resident memory B cell migration and rapid relocation to boost antibody secretion at infected sites

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Multi-omics blood atlas reveals unique features of immune and platelet responses to SARS-CoV-2 Omicron breakthrough infection

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Pediatric critical illness endotypes reveal distinct outcomes and immune pathways shared across cause of illness

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A quantitative metabolic signature of host response during SARS-CoV-2 infection and recovery

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Towards systems immunology of critical illness at scale: from single cell ‘omics to digital twins

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Transcriptional control of interferon-stimulated genes

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Tensor decomposition reveals trans-regulated gene modules in maize drought response

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Awake prone positioning for patients with COVID-19-induced acute hypoxemic respiratory failure

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Cerebrospinal Fluid Protein Markers Indicate Neuro-Damage in SARS-CoV-2-Infected Nonhuman Primates

inferred← citeshttps://doi.org/10.1016/j.mcpro.2025.101068openalex-snapshot

Multi-Omics Blood Atlas Reveals Host Immune Response Features of Immunocompromised Populations Following SARS-CoV-2 Infection

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Hematopathology of Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Coronavirus Disease-19

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VoxelCoder: Classification of human cellular phenotypes via autoencoder batch alignment and hyperdimensional representation of cytometry data

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Emerging features of MAIT cells and other unconventional T cell populations in human viral disease and vaccination.

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Spike antibody Fc is associated with protection from SARS-CoV-2 challenge in macaques

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Genome-wide characterization of alternative splicing in blood cells of COVID-19 and respiratory infections of relevance

inferred← citeshttps://doi.org/10.1016/j.xgen.2023.100306openalex-snapshot

Comprehensive epigenomic profiling reveals the extent of disease-specific chromatin states and informs target discovery in ankylosing spondylitis

inferred← citeshttps://doi.org/10.1016/j.xgen.2025.100918openalex-snapshot

Temporal multi-omics analysis of COVID-19 in end-stage kidney disease

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Sepsis in patients who are immunocompromised: diagnostic challenges and future therapies

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Real-world evaluation of rapid and laboratory-free COVID-19 triage for emergency care: external validation and pilot deployment of artificial intelligence driven screening

inferred← citeshttps://doi.org/10.1016/s2589-7500(22)00132-7openalex-snapshot

Constructing custom-made radiotranscriptomic signatures of vascular inflammation from routine CT angiograms: a prospective outcomes validation study in COVID-19

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Low-Perturbation Whole-Blood CD11b Measurement by Biomimetic Acoustofluidic Preprocessing and Wash-Free Microsphere-Competition Readout

inferred← citeshttps://doi.org/10.1021/acs.jafc.2c04344openalex-snapshot

Integrated Proteomics and Metabolomics Analysis to Explore the Amelioration Mechanisms of Rosa roxburghii Tratt Fruit Polyphenols on Lipopolysaccharide-Induced Acute Lung Injury Mice

inferred← citeshttps://doi.org/10.1021/acs.jproteome.1c00657openalex-snapshot

Advances and Utility of the Human Plasma Proteome

inferred← citeshttps://doi.org/10.1038/s41392-023-01466-9openalex-snapshot

Deciphering dynamic changes of the aging transcriptome with COVID-19 progression and convalescence in the human blood

inferred← citeshttps://doi.org/10.1038/s41392-023-01580-8openalex-snapshot

The role of cell death in SARS-CoV-2 infection

inferred← citeshttps://doi.org/10.1038/s41392-023-01669-0openalex-snapshot

Non-coding RNAs expression in SARS-CoV-2 infection: Pathogenesis, clinical significance and therapeutic targets

inferred← citeshttps://doi.org/10.1038/s41467-022-34145-4openalex-snapshot

Single-cell profiling reveals distinct adaptive immune hallmarks in MDA5+ dermatomyositis with therapeutic implications

inferred← citeshttps://doi.org/10.1038/s41467-022-35454-4openalex-snapshot

Multi-omics identify falling LRRC15 as a COVID-19 severity marker and persistent pro-thrombotic signals in convalescence

inferred← citeshttps://doi.org/10.1038/s41467-023-39923-2openalex-snapshot

Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2

inferred← citeshttps://doi.org/10.1038/s41467-023-41159-zopenalex-snapshot

Comprehensive proteomics and meta-analysis of COVID-19 host response

inferred← citeshttps://doi.org/10.1038/s41467-023-42421-0openalex-snapshot

Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs

inferred← citeshttps://doi.org/10.1038/s41467-023-42455-4openalex-snapshot

Interferon-γ couples CD8+ T cell avidity and differentiation during infection

inferred← citeshttps://doi.org/10.1038/s41467-023-43181-7openalex-snapshot

Single cell transcriptomics shows that malaria promotes unique regulatory responses across multiple immune cell subsets

inferred← citeshttps://doi.org/10.1038/s41467-024-44986-wopenalex-snapshot

Longitudinal plasma proteomics reveals biomarkers of alveolar-capillary barrier disruption in critically ill COVID-19 patients

inferred← citeshttps://doi.org/10.1038/s41467-024-47463-6openalex-snapshot

Multi-omics analysis reveals COVID-19 vaccine induced attenuation of inflammatory responses during breakthrough disease

inferred← citeshttps://doi.org/10.1038/s41467-024-48821-0openalex-snapshot

Gene expression signatures in blood from a West African sepsis cohort define host response phenotypes

inferred← citeshttps://doi.org/10.1038/s41467-024-51382-xopenalex-snapshot

scConfluence: single-cell diagonal integration with regularized Inverse Optimal Transport on weakly connected features

inferred← citeshttps://doi.org/10.1038/s41467-024-54764-3openalex-snapshot

SARS-CoV-2 human challenge reveals biomarkers that discriminate early and late phases of respiratory viral infections

inferred← citeshttps://doi.org/10.1038/s41467-024-55424-2openalex-snapshot

Distinct immune cell infiltration patterns in pancreatic ductal adenocarcinoma (PDAC) exhibit divergent immune cell selection and immunosuppressive mechanisms

inferred← citeshttps://doi.org/10.1038/s41467-025-57706-9openalex-snapshot

PD-L1+ plasma cells suppress T lymphocyte responses in patients with sepsis and mouse sepsis models

inferred← citeshttps://doi.org/10.1038/s41467-025-58977-yopenalex-snapshot

Disease-specific B cell clones are shared between patients with Crohn’s disease

inferred← citeshttps://doi.org/10.1038/s41467-026-69919-7openalex-snapshot

Context-specific regulatory genetic variation in MTOR dampens neutrophil-T cell crosstalk in pneumonia-associated sepsis

inferred← citeshttps://doi.org/10.1038/s41467-026-75681-7openalex-snapshot

Fast, flexible analysis of differences in cellular composition with crumblr

inferred← citeshttps://doi.org/10.1038/s41467-026-78143-2openalex-snapshot

ProFormer: generalizable classification of single-cell and plasma proteomes using deep learning

inferred← citeshttps://doi.org/10.1038/s41556-025-01622-zopenalex-snapshot

Systematic reconstruction of molecular pathway signatures using scalable single-cell perturbation screens

inferred← citeshttps://doi.org/10.1038/s41577-022-00785-2openalex-snapshot

COVID-19 and cellular senescence

inferred← citeshttps://doi.org/10.1038/s41577-022-00809-xopenalex-snapshot

The impact of pre-existing cross-reactive immunity on SARS-CoV-2 infection and vaccine responses

inferred← citeshttps://doi.org/10.1038/s41577-026-01331-0openalex-snapshot

The challenge and promise of studying human antigen-specific T cells

inferred← citeshttps://doi.org/10.1038/s41580-023-00615-wopenalex-snapshot

The technological landscape and applications of single-cell multi-omics

inferred← citeshttps://doi.org/10.1038/s41586-022-05163-5openalex-snapshot

DOCK2 is involved in the host genetics and biology of severe COVID-19

inferred← citeshttps://doi.org/10.1038/s41586-024-07789-zopenalex-snapshot

Immune system adaptation during gender-affirming testosterone treatment

inferred← citeshttps://doi.org/10.1038/s41587-023-01767-yopenalex-snapshot

Dictionary learning for integrative, multimodal and scalable single-cell analysis

inferred← citeshttps://doi.org/10.1038/s41587-023-02033-xopenalex-snapshot

Discovery of sparse, reliable omic biomarkers with Stabl

inferred← citeshttps://doi.org/10.1038/s41588-023-01375-1openalex-snapshot

Single-cell analyses and host genetics highlight the role of innate immune cells in COVID-19 severity

inferred← citeshttps://doi.org/10.1038/s41588-023-01378-yopenalex-snapshot

Innate immune cell genetic risk factors are linked to COVID-19 severity

inferred← citeshttps://doi.org/10.1038/s41588-023-01523-7openalex-snapshot

Precise identification of cell states altered in disease using healthy single-cell references

inferred← citeshttps://doi.org/10.1038/s41588-025-02266-3openalex-snapshot

Deciphering state-dependent immune features from multi-layer omics data at single-cell resolution

inferred← citeshttps://doi.org/10.1038/s41588-026-02776-8openalex-snapshot

Single-allele nanoscale mapping of regulatory variants

inferred← citeshttps://doi.org/10.1038/s41590-021-01084-zopenalex-snapshot

An immunodominant NP105–113-B*07:02 cytotoxic T cell response controls viral replication and is associated with less severe COVID-19 disease

inferred← citeshttps://doi.org/10.1038/s41590-023-01445-wopenalex-snapshot

Autoantibodies against chemokines post-SARS-CoV-2 infection correlate with disease course

inferred← citeshttps://doi.org/10.1038/s41590-023-01490-5openalex-snapshot

Neutrophils and emergency granulopoiesis drive immune suppression and an extreme response endotype during sepsis

inferred← citeshttps://doi.org/10.1038/s41590-023-01608-9openalex-snapshot

Multimodal single-cell datasets characterize antigen-specific CD8+ T cells across SARS-CoV-2 vaccination and infection

inferred← citeshttps://doi.org/10.1038/s41590-024-01994-8openalex-snapshot

A longitudinal single-cell atlas of anti-tumour necrosis factor treatment in inflammatory bowel disease

inferred← citeshttps://doi.org/10.1038/s41590-024-02064-9openalex-snapshot

Temporal profiling of human lymphoid tissues reveals coordinated defense against viral challenge

inferred← citeshttps://doi.org/10.1038/s41590-025-02136-4openalex-snapshot

Systemic inflammation impairs myelopoiesis and interferon type I responses in humans

inferred← citeshttps://doi.org/10.1038/s41591-025-04005-xopenalex-snapshot

Unlocking host response signatures in sepsis and critical illnesses

inferred← citeshttps://doi.org/10.1038/s41591-025-04126-3openalex-snapshot

Interpretable inflammation landscape of circulating immune cells

inferred← citeshttps://doi.org/10.1038/s41592-023-02035-2openalex-snapshot

Population-level integration of single-cell datasets enables multi-scale analysis across samples

inferred← citeshttps://doi.org/10.1038/s41592-024-02532-yopenalex-snapshot

Considerations for building and using integrated single-cell atlases

inferred← citeshttps://doi.org/10.1038/s41592-025-02793-1openalex-snapshot

Reproducible single-cell annotation of programs underlying T cell subsets, activation states and functions

inferred← citeshttps://doi.org/10.1038/s41597-026-06558-zopenalex-snapshot

SEA CDM: Study-Experiment-Assay Common Data Model and Databases for Cross-Domain Data Integration and Analysis

inferred← citeshttps://doi.org/10.1038/s41598-022-15668-8openalex-snapshot

Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion

inferred← citeshttps://doi.org/10.1038/s41598-022-20062-5openalex-snapshot

Serum biomarkers associated with SARS-CoV-2 severity

inferred← citeshttps://doi.org/10.1038/s41598-022-21620-7openalex-snapshot

A molecular signature of lung-resident CD8+ T cells elicited by subunit vaccination

inferred← citeshttps://doi.org/10.1038/s41598-023-28696-9openalex-snapshot

Multimodal single-cell analyses of peripheral blood mononuclear cells of COVID-19 patients in Japan

inferred← citeshttps://doi.org/10.1038/s41598-023-30158-1openalex-snapshot

Identification of two early blood biomarkers ACHE and CLEC12A for improved risk stratification of critically ill COVID-19 patients

inferred← citeshttps://doi.org/10.1038/s41598-023-45883-wopenalex-snapshot

Immune inhibitory receptor-mediated immune response, metabolic adaptation, and clinical characterization in patients with COVID-19

inferred← citeshttps://doi.org/10.1038/s41598-024-51422-yopenalex-snapshot

The death rate of COVID-19 infection in different SARS-CoV-2 variants was related to C-reactive protein gene polymorphisms

inferred← citeshttps://doi.org/10.1038/s41598-025-12592-5openalex-snapshot

No indications of weight gain associated DNA methylation changes in patients with anorexia nervosa

inferred← citeshttps://doi.org/10.1038/s41598-025-94839-9openalex-snapshot

Plasma metabolomic signatures for copy number variants and COVID-19 risk loci in Northern Finland populations

inferred← citeshttps://doi.org/10.1038/s41746-025-02291-wopenalex-snapshot

Explainable AI multiomics analysis reveals shared and divergent host responses in COVID-19 and influenza

inferred← citeshttps://doi.org/10.1038/s42003-024-05922-2openalex-snapshot

Decreased progenitor TCF1 + T-cells correlate with COVID-19 disease severity

inferred← citeshttps://doi.org/10.1038/s42003-025-08407-yopenalex-snapshot

Systemic cytokines drive conserved severity-associated myeloid responses across bacterial and viral infections

inferred← citeshttps://doi.org/10.1038/s43856-023-00283-zopenalex-snapshot

Discovery and systematic assessment of early biomarkers that predict progression to severe COVID-19 disease

inferred← citeshttps://doi.org/10.1038/s44161-023-00295-xopenalex-snapshot

Lipid-associated macrophages transition to an inflammatory state in human atherosclerosis, increasing the risk of cerebrovascular complications

inferred← citeshttps://doi.org/10.1038/s44319-024-00189-4openalex-snapshot

Novel immunomodulatory properties of adenosine analogs promote their antiviral activity against SARS-CoV-2

inferred← citeshttps://doi.org/10.1039/d4sd00009aopenalex-snapshot

A methodological study for the diagnosis of the SARS-Cov-2 infection in human serum with a macrocyclic sensor array

inferred← citeshttps://doi.org/10.1039/d5nh00446bopenalex-snapshot

Self-assembled DNA nanodevices for intelligent biosensing

inferred← citeshttps://doi.org/10.1073/pnas.2208458119openalex-snapshot

High-throughput functional annotation of natural products by integrated activity profiling

inferred← citeshttps://doi.org/10.1073/pnas.2307722120openalex-snapshot

mitoSplitter: A mitochondrial variants-based method for efficient demultiplexing of pooled single-cell RNA-seq

inferred← citeshttps://doi.org/10.1073/pnas.2313719121openalex-snapshot

Principled and interpretable alignability testing and integration of single-cell data

inferred← citeshttps://doi.org/10.1080/22221751.2023.2287118openalex-snapshot

The characterization of CD8 + T-cell responses in COVID-19

inferred← citeshttps://doi.org/10.1080/22221751.2025.2494705openalex-snapshot

Reading of human acute immune dynamics in omicron SARS-CoV-2 breakthrough infection

inferred← citeshttps://doi.org/10.1093/bib/bbad159openalex-snapshot

Benchmarking of analytical combinations for COVID-19 outcome prediction using single-cell RNA sequencing data

inferred← citeshttps://doi.org/10.1093/bib/bbaf243openalex-snapshot

scaLR: a low-resource deep neural network-based platform for single cell analysis and biomarker discovery

inferred← citeshttps://doi.org/10.1093/bib/bbaf296openalex-snapshot

iGTP: learning interpretable cellular embedding for inferring biological mechanisms underlying single-cell transcriptomics

inferred← citeshttps://doi.org/10.1093/bib/bbag286openalex-snapshot

scHILL: deciphering individual-level immune cell heterogeneity with single-cell RNA sequencing data

inferred← citeshttps://doi.org/10.1093/bioinformatics/btae067openalex-snapshot

Phenotype prediction from single-cell RNA-seq data using attention-based neural networks

inferred← citeshttps://doi.org/10.1093/bioinformatics/btag326openalex-snapshot

VDJ-REMIX: REpertoire Module Identification and eXploration

inferred← citeshttps://doi.org/10.1093/gpbjnl/qzaf062openalex-snapshot

ACE: A Versatile Contrastive Learning Framework for Single-cell Mosaic Integration

inferred← citeshttps://doi.org/10.1093/jimmun/vkaf205openalex-snapshot

CD20+ natural killer cells are polyfunctional, memory-like cells that are enriched in inflammatory disorders

inferred← citeshttps://doi.org/10.1093/jimmun/vkaf262openalex-snapshot

Deep phenomics of PRR agonist activated human blood

inferred← citeshttps://doi.org/10.1093/nar/gkac1019openalex-snapshot

COMBATdb: a database for the COVID-19 Multi-Omics Blood ATlas

inferred← citeshttps://doi.org/10.1093/nar/gkag933openalex-snapshot

SingPro 2.0: a proteomics-centric knowledge base for single-cell multimodal profiling

inferred← citeshttps://doi.org/10.1093/nargab/lqae134openalex-snapshot

scDAPP: a comprehensive single-cell transcriptomics analysis pipeline optimized for cross-group comparison

inferred← citeshttps://doi.org/10.1097/ccm.0000000000005983openalex-snapshot

Analysis of Protein Biomarkers From Hospitalized COVID-19 Patients Reveals Severity-Specific Signatures and Two Distinct Latent Profiles With Differential Responses to Corticosteroids*

inferred← citeshttps://doi.org/10.1097/fm9.0000000000000190openalex-snapshot

Cellular and Molecular Atlas of Peripheral Blood Mononuclear Cells from a Pregnant Woman After Recovery from COVID-19

inferred← citeshttps://doi.org/10.1097/md.0000000000031740openalex-snapshot

Biosafety protection and workflow of clinical microbiology laboratory under COVID-19: A review

inferred← citeshttps://doi.org/10.1097/md.0000000000039810openalex-snapshot

Utilizing press needle acupuncture to treat mild-to-moderate COVID-19: A single-blind, randomized controlled trial

inferred← citeshttps://doi.org/10.1101/2022.04.05.22273167openalex-snapshot

Low-dose IL-2 reduces IL-21 + T cells and induces a long-lived anti-inflammatory gene expression signature inversely modulated in COVID-19 patients

inferred← citeshttps://doi.org/10.1101/2022.04.29.22274267openalex-snapshot

Multi-omics identify LRRC15 as a COVID-19 severity predictor and persistent pro-thrombotic signals in convalescence

inferred← citeshttps://doi.org/10.1101/2022.05.23.493121openalex-snapshot

Anti-chemokine antibodies after SARS-CoV-2 infection correlate with favorable disease course

inferred← citeshttps://doi.org/10.1101/2022.06.20.496916openalex-snapshot

scPheno: A deep generative model to integrate scRNA-seq with disease phenotypes and its application on prediction of COVID-19 pneumonia and severe assessment

inferred← citeshttps://doi.org/10.1101/2022.08.07.22278495openalex-snapshot

High-throughput mass spectrometry maps the sepsis plasma proteome and differences in response

inferred← citeshttps://doi.org/10.1101/2022.11.16.516822openalex-snapshot

Malaria drives unique regulatory responses across multiple immune cell subsets

inferred← citeshttps://doi.org/10.1101/2022.12.03.518997openalex-snapshot

Scope+: An open source generalizable architecture for single-cell atlases at sample and cell levels

inferred← citeshttps://doi.org/10.1101/2022.12.21.22283654openalex-snapshot

Unbiased single cell spatial analysis localises inflammatory clusters of immature neutrophils-CD8 T cells to alveolar progenitor cells in fatal COVID-19 lungs

inferred← citeshttps://doi.org/10.1101/2023.01.24.525203openalex-snapshot

Multimodal characterization of antigen-specific CD8 + T cells across SARS-CoV-2 vaccination and infection

inferred← citeshttps://doi.org/10.1101/2023.02.21.527754openalex-snapshot

Utilizing Pre-trained Network Medicine Models for Generating Biomarkers, Targets, Re-purposing Drugs, and Personalized Therapeutic Regimes: COVID-19 Applications

inferred← citeshttps://doi.org/10.1101/2023.03.04.531126openalex-snapshot

Extraction of biological signals by factorization enables the reliable analysis of single-cell transcriptomics

inferred← citeshttps://doi.org/10.1101/2023.03.11.532085openalex-snapshot

Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis

inferred← citeshttps://doi.org/10.1101/2023.06.01.23290819openalex-snapshot

SARS-CoV-2 human challenge reveals single-gene blood transcriptional biomarkers that discriminate early and late phases of acute respiratory viral infections

inferred← citeshttps://doi.org/10.1101/2023.08.03.551836openalex-snapshot

Is your data alignable? Principled and interpretable alignability testing and integration of single-cell data

inferred← citeshttps://doi.org/10.1101/2023.08.31.555730openalex-snapshot

Single-cell immune multi-omics and repertoire analyses in pancreatic ductal adenocarcinoma reveal differential immunosuppressive mechanisms within different tumour microenvironments

inferred← citeshttps://doi.org/10.1101/2023.09.03.23294989openalex-snapshot

Differentiation of COVID-19 from other emergency infectious disease presentations using whole blood transcriptomics then rapid qPCR: a case-control and observational cohort study

inferred← citeshttps://doi.org/10.1101/2023.09.08.23295024openalex-snapshot

Disease trajectories in hospitalized COVID-19 patients are predicted by clinical and peripheral blood signatures representing distinct lung pathologies

inferred← citeshttps://doi.org/10.1101/2023.09.15.558006openalex-snapshot

Temporal profiling of human lymphoid tissues reveals coordinated defence to viral challenge

inferred← citeshttps://doi.org/10.1101/2023.10.30.564631openalex-snapshot

Patient phenotypes and their relation to TNFα signaling and immune cell composition in critical illness and autoimmune disease

inferred← citeshttps://doi.org/10.1101/2025.01.22.634302openalex-snapshot

Integrative Mapping of Pre-existing Immune Landscapes for Vaccine Response Prediction

inferred← citeshttps://doi.org/10.1101/2025.03.06.25323473openalex-snapshot

Unravelling the Complex Inflammatory Landscape of COVID-19 infection: A Pathway to Biomarkers Identification in Infection-Associated Delirium in the ICU

inferred← citeshttps://doi.org/10.1101/2025.05.31.657155openalex-snapshot

Diverse modes of T cell receptor sequence convergence define unique functional and cellular phenotypes

inferred← citeshttps://doi.org/10.1101/2025.07.14.664825openalex-snapshot

Identifying the Minimal Number of Protein Markers for Cell Type Annotation Using MiniMarS

inferred← citeshttps://doi.org/10.1101/2025.08.25.671921openalex-snapshot

Microglial activation and alpha-synuclein oligomers drive the early inflammatory phase of Parkinson’s disease

inferred← citeshttps://doi.org/10.1101/2025.11.24.685470openalex-snapshot

PULSAR: a Foundation Model for Multi-scale and Multicellular Biology

inferred← citeshttps://doi.org/10.1109/bibm62325.2024.10822866openalex-snapshot

scMonica: Single-cell Mosaic Omics Nonlinear Integration and Clustering Analysis

inferred← citeshttps://doi.org/10.1111/acel.14011openalex-snapshot

Circulating monocytes expressing senescence‐associated features are enriched in COVID ‐19 patients with severe disease

inferred← citeshttps://doi.org/10.1111/all.16553openalex-snapshot

Circulating Mast Cell Progenitors Are Depleted by Benralizumab in Severe Asthma

inferred← citeshttps://doi.org/10.1111/imcb.70006openalex-snapshot

Exploratory analyses of leukocyte responses in hospitalized patients treated with ozanimod following a severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2) infection

inferred← citeshttps://doi.org/10.1111/jcmm.17996openalex-snapshot

Extracellular vesicle features are associated with COVID‐19 severity

inferred← citeshttps://doi.org/10.1126/sciadv.adf9717openalex-snapshot

A simple, time- and cost-effective, high-throughput depletion strategy for deep plasma proteomics

inferred← citeshttps://doi.org/10.1126/sciadv.adl5762openalex-snapshot

Longitudinal plasma proteomic analysis of 1117 hospitalized patients with COVID-19 identifies features associated with severity and outcomes

inferred← citeshttps://doi.org/10.1126/science.adt3130openalex-snapshot

Chinese Immune Multi-Omics Atlas

inferred← citeshttps://doi.org/10.1126/scisignal.abq5389openalex-snapshot

Stress signaling boosts interferon-induced gene transcription in macrophages

inferred← citeshttps://doi.org/10.1126/scitranslmed.abq4433openalex-snapshot

An immune dysfunction score for stratification of patients with acute infection based on whole-blood gene expression

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