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Experimental Reconstruction of the Functional Transfer of Intron- Containing Plastid Genes to the Nucleus

https://doi.org/10.1016/j.cub.2012.03.005

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.20761openalex-snapshot

Reconstructing evolution: Gene transfer from plastids to the nucleus

inferredcites →https://doi.org/10.1002/j.1460-2075.1987.tb02587.xopenalex-snapshot

Plastid, nuclear and reverse transcriptase sequences in the mitochondrial genome of Oenothera: is genetic information transferred between organelles via RNA?

inferredcites →https://doi.org/10.1002/j.1460-2075.1992.tb05473.xopenalex-snapshot

Silent mitochondrial and active nuclear genes for subunit 2 of cytochrome c oxidase (cox2) in soybean: evidence for RNA‐mediated gene transfer.

inferredcites →https://doi.org/10.1006/jmbi.2001.4960openalex-snapshot

Transgenic Plastids in Basic Research and Plant Biotechnology

inferredcites →https://doi.org/10.1007/bf00021796openalex-snapshot

A reverse transcriptase activity in potato mitochondria

inferredcites →https://doi.org/10.1007/bf02788884openalex-snapshot

The 2005 version of the chloroplast DNA sequence from tobacco (Nicotiana tabacum)

inferredcites →https://doi.org/10.1007/s11103-011-9764-2openalex-snapshot

Introducing an RNA editing requirement into a plastid-localised transgene reduces but does not eliminate functional gene transfer to the nucleus

inferredcites →https://doi.org/10.1016/0014-5793(95)01100-sopenalex-snapshot

Transfer of rps10 from the mitochondrion to the nucleus in Arabidopsis thaliana: evidence for RNA‐mediated transfer and exon shuffling at the integration site

inferredcites →https://doi.org/10.1016/0092-8674(81)90011-8openalex-snapshot

RNA-mediated transfer of the gene coxII from the mitochondrion to the nucleus during flowering plant evolution

inferredcites →https://doi.org/10.1016/j.copbio.2006.12.001openalex-snapshot

Plastid biotechnology: prospects for herbicide and insect resistance, metabolic engineering and molecular farming

inferredcites →https://doi.org/10.1016/j.gene.2005.06.037openalex-snapshot

Regulation of translation via mRNA structure in prokaryotes and eukaryotes

inferredcites →https://doi.org/10.1016/j.tibtech.2010.01.006openalex-snapshot

Solar-powered factories for new vaccines and antibiotics

inferredcites →https://doi.org/10.1016/s0074-7696(08)62223-8openalex-snapshot

Escape and Migration of Nucleic Acids between Chloroplasts, Mitochondria, and the Nucleus

inferredcites →https://doi.org/10.1016/s0168-9525(01)02324-1openalex-snapshot

The ins and outs of group II introns

inferredcites →https://doi.org/10.1016/s1097-2765(00)80397-4openalex-snapshot

Patching Broken Chromosomes with Extranuclear Cellular DNA

inferredcites →https://doi.org/10.1038/290457a0openalex-snapshot

Sequence and organization of the human mitochondrial genome

inferredcites →https://doi.org/10.1038/346376a0openalex-snapshot

Escape of DNA from mitochondria to the nucleus in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1038/386417a0openalex-snapshot

Trans-activation of group II intron splicing by nuclear U5 snRNA

inferredcites →https://doi.org/10.1038/47076openalex-snapshot

Mitochondrial DNA repairs double-strand breaks in yeast chromosomes

inferredcites →https://doi.org/10.1038/nature01435openalex-snapshot

Direct measurement of the transfer rate of chloroplast DNA into the nucleus

inferredcites →https://doi.org/10.1038/nbt0602-581openalex-snapshot

Molecular strategies for gene containment in transgenic crops

inferredcites →https://doi.org/10.1038/nbt0802-843copenalex-snapshot

Erratum: Molecular strategies for gene containment in transgenic crops

inferredcites →https://doi.org/10.1038/nbt0895-791openalex-snapshot

Targeted Insertion of Foreign Genes into the Tobacco Plastid Genome without Physical Linkage to the Selectable Marker Gene

inferredcites →https://doi.org/10.1038/nrg1271openalex-snapshot

Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes

inferredcites →https://doi.org/10.1073/pnas.0400853101openalex-snapshot

Simple and complex nuclear loci created by newly transferred chloroplast DNA in tobacco

inferredcites →https://doi.org/10.1073/pnas.0700008104openalex-snapshot

Determining the transgene containment level provided by chloroplast transformation

inferredcites →https://doi.org/10.1073/pnas.091110398openalex-snapshot

Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: Implication of potential sequencing errors caused by large-unit repeats

inferredcites →https://doi.org/10.1073/pnas.1430924100openalex-snapshot

High-frequency gene transfer from the chloroplast genome to the nucleus

inferredcites →https://doi.org/10.1073/pnas.182432999openalex-snapshot

Evolutionary analysis of Arabidopsis , cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

inferredcites →https://doi.org/10.1073/pnas.90.3.913openalex-snapshot

High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene.

inferredcites →https://doi.org/10.1093/molbev/msm055openalex-snapshot

Exceptionally High Density of NUMTs in the Honeybee Genome

inferredcites →https://doi.org/10.1093/molbev/msr021openalex-snapshot

The Origin and Characterization of New Nuclear Genes Originating from a Cytoplasmic Organellar Genome

inferredcites →https://doi.org/10.1093/nar/23.13.2544openalex-snapshot

Correct splicing of a group II intron from a chimeric reporter gene transcript in tobacco plastids

inferredcites →https://doi.org/10.1093/nar/29.4.970openalex-snapshot

Complementarity of the 16S rRNA penultimate stem with sequences downstream of the AUG destabilizes the plastid mRNAs

inferredcites →https://doi.org/10.1093/nar/gkl634openalex-snapshot

Tobacco plastid ribosomal protein S18 is essential for cell survival

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025977openalex-snapshot

Analysis of plastid DNA-like sequences within the nuclear genomes of higher plants

inferredcites →https://doi.org/10.1101/gad.14.4.414openalex-snapshot

Translation by ribosome shunting on adenovirus and hsp70 mRNAs facilitated by complementarity to 18S rRNA

inferredcites →https://doi.org/10.1101/gr.093302.109openalex-snapshot

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

inferredcites →https://doi.org/10.1101/gr.3788705openalex-snapshot

Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants

inferredcites →https://doi.org/10.1105/tpc.106.046466openalex-snapshot

Experimental Reconstruction of Functional Gene Transfer from the Tobacco Plastid Genome to the Nucleus

inferredcites →https://doi.org/10.1105/tpc.108.060392openalex-snapshot

Rpl33, a Nonessential Plastid-Encoded Ribosomal Protein in Tobacco, Is Required under Cold Stress Conditions

inferredcites →https://doi.org/10.1105/tpc.110.073908openalex-snapshot

Y3IP1, a Nucleus-Encoded Thylakoid Protein, Cooperates with the Plastid-Encoded Ycf3 Protein in Photosystem I Assembly of Tobacco and Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.13.3.645openalex-snapshot

Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus

inferredcites →https://doi.org/10.1105/tpc.5.1.97openalex-snapshot

Recent Stable Insertion of Mitochondrial DNA into an Arabidopsis Polyubiquitin Gene by Nonhomologous Recombination

inferredcites →https://doi.org/10.1111/j.1365-313x.2006.02960.xopenalex-snapshot

Contained metabolic engineering in tomatoes by expression of carotenoid biosynthesis genes from the plastid genome

inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03261.xopenalex-snapshot

Identification of a plastid intercistronic expression element (IEE) facilitating the expression of stable translatable monocistronic mRNAs from operons

inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03278.xopenalex-snapshot

Exceptional paternal inheritance of plastids in Arabidopsis suggests that low‐frequency leakage of plastids via pollen may be universal in plants

inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03702.xopenalex-snapshot

Exhaustion of the chloroplast protein synthesis capacity by massive expression of a highly stable protein antibiotic

inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04631.xopenalex-snapshot

Biolistic co‐transformation of the nuclear and plastid genomes

inferredcites →https://doi.org/10.1111/j.1399-3054.1962.tb08052.xopenalex-snapshot

A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures

inferredcites →https://doi.org/10.1111/j.1467-7652.2008.00356.xopenalex-snapshot

High‐level expression of human immunodeficiency virus antigens from the tobacco and tomato plastid genomes

inferredcites →https://doi.org/10.1126/science.1170397openalex-snapshot

Exchange of Genetic Material Between Cells in Plant Tissue Grafts

inferredcites →https://doi.org/10.1126/science.283.5407.1476openalex-snapshot

Mitochondrial Evolution

inferredcites →https://doi.org/10.1146/annurev.arplant.55.031903.141633openalex-snapshot

PLASTID TRANSFORMATION IN HIGHER PLANTS

inferredcites →https://doi.org/10.1371/journal.pgen.1000323openalex-snapshot

Instability of Plastid DNA in the Nuclear Genome

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4757412openalex-extracted

Phylogenomics of the Bupleurum in East Asia: Species Distribution Patterns and Diversification

inferred← citeshttps://doi.org/10.1002/bies.201200137openalex-snapshot

Tuning a ménage à trois: Co‐evolution and co‐adaptation of nuclear and organellar genomes in plants

inferred← citeshttps://doi.org/10.1002/ece3.6749openalex-snapshot

The insertion of a mitochondrial selfish element into the nuclear genome and its consequences

inferred← citeshttps://doi.org/10.1007/978-1-4614-7780-8openalex-snapshot

Lateral Gene Transfer in Evolution

inferred← citeshttps://doi.org/10.1007/978-1-4614-7780-8_2openalex-snapshot

Lateral Gene Transfer and the Evolution of Photosynthesis in Eukaryotes

inferred← citeshttps://doi.org/10.1007/978-3-7091-1303-5_3openalex-snapshot

The Single Primary Endosymbiotic Event

inferred← citeshttps://doi.org/10.1007/s12038-013-9402-zopenalex-snapshot

Metabolic engineering of chloroplasts for artemisinic acid biosynthesis and impact on plant growth

inferred← citeshttps://doi.org/10.1016/j.bbapap.2016.03.009openalex-snapshot

Multifunctionality of plastid nucleoids as revealed by proteome analyses

inferred← citeshttps://doi.org/10.1016/j.cub.2012.03.043openalex-snapshot

Endosymbiotic Evolution: RNA Intermediates in Endosymbiotic Gene Transfer

inferred← citeshttps://doi.org/10.1016/j.mib.2014.09.017openalex-snapshot

The periplastidal compartment: a naturally minimized eukaryotic cytoplasm

inferred← citeshttps://doi.org/10.1016/j.synbio.2026.07.004openalex-snapshot

Transfer of chloroplast rbcL and atpB genes to nucleus enables partial rescue of photoautotrophic growth of Chlamydomonas

inferred← citeshttps://doi.org/10.1016/j.xplc.2026.101783openalex-snapshot

Editing and synthetic engineering of chloroplast genomes

inferred← citeshttps://doi.org/10.1038/s41477-023-01538-2openalex-snapshot

Targeted knockout of a conserved plant mitochondrial gene by genome editing

inferred← citeshttps://doi.org/10.1038/s41477-025-02005-wopenalex-snapshot

Suppression of plastid-to-nucleus gene transfer by DNA double-strand break repair

inferred← citeshttps://doi.org/10.1038/s41576-018-0035-9openalex-snapshot

Cytonuclear integration and co-evolution

inferred← citeshttps://doi.org/10.1038/s41576-023-00688-5openalex-snapshot

Horizontal gene transfer in eukaryotes: aligning theory with data

inferred← citeshttps://doi.org/10.1038/srep09040openalex-snapshot

The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family

inferred← citeshttps://doi.org/10.1080/15476286.2015.1017201openalex-snapshot

Non-coding RNAs’ partitioning in the evolution of photosynthetic organisms via energy transduction and redox signaling

inferred← citeshttps://doi.org/10.1093/dnares/dst045openalex-snapshot

Patterns of Genomic Integration of Nuclear Chloroplast DNA Fragments in Plant Species

inferred← citeshttps://doi.org/10.1093/femsre/fuac012openalex-snapshot

The evolution and role of eukaryotic-like domains in environmental intracellular bacteria: the battle with a eukaryotic cell

inferred← citeshttps://doi.org/10.1093/molbev/msx170openalex-snapshot

Mitochondrial Retroprocessing Promoted Functional Transfers of rpl5 to the Nucleus in Grasses

inferred← citeshttps://doi.org/10.1093/nar/gkae628openalex-snapshot

Rapid functional activation of horizontally transferred eukaryotic intron-containing genes in the bacterial recipient

inferred← citeshttps://doi.org/10.1093/nar/gkaf220openalex-snapshot

A hidden intrinsic ability of bicistronic expression based on a novel translation reinitiation mechanism in yeast

inferred← citeshttps://doi.org/10.1093/nar/gkz370openalex-snapshot

Rapid functional activation of a horizontally transferred eukaryotic gene in a bacterial genome in the absence of selection

inferred← citeshttps://doi.org/10.1093/plcell/koad165openalex-snapshot

Plastid dsRNA transgenes trigger phased small RNA-based gene silencing of nuclear-encoded genes

inferred← citeshttps://doi.org/10.1093/plphys/kiad013openalex-snapshot

Characterization of mutants deficient in N-terminal phosphorylation of the chloroplast ATP synthase subunit β

inferred← citeshttps://doi.org/10.1101/2021.11.04.467332openalex-snapshot

Functional characterization of mutants deficient in N-terminal phosphorylation of the chloroplast ATP synthase subunit β

inferred← citeshttps://doi.org/10.1101/2022.12.06.519219openalex-snapshot

Plastid double-strand RNA transgenes trigger small RNA-based gene silencing of nuclear-encoded genes

inferred← citeshttps://doi.org/10.1101/787044openalex-snapshot

The insertion of a mitochondrial selfish element into the nuclear genome and its consequences

inferred← citeshttps://doi.org/10.1101/gr.279609.124openalex-snapshot

Continuous infiltration and evolutionary trajectory of nuclear organelle DNA inOryza

inferred← citeshttps://doi.org/10.1104/pp.113.214528openalex-snapshot

Potential Functional Replacement of the Plastidic Acetyl-CoA Carboxylase Subunit (accD) Gene by Recent Transfers to the Nucleus in Some Angiosperm Lineages

inferred← citeshttps://doi.org/10.1104/pp.113.228338openalex-snapshot

RBF1, a Plant Homolog of the Bacterial Ribosome-Binding Factor RbfA, Acts in Processing of the Chloroplast 16S Ribosomal RNA

inferred← citeshttps://doi.org/10.1111/jse.13189openalex-snapshot

Phylogenomics of the Bupleurum in East Asia: Insights into distribution patterns and diversification

inferred← citeshttps://doi.org/10.1111/nph.70364openalex-snapshot

Beyond conservation: the landscape of chloroplast genome rearrangements in angiosperms

inferred← citeshttps://doi.org/10.1111/tpj.12256openalex-snapshot

Reverse genetics in complex multigene operons by co‐transformation of the plastid genome and its application to the open reading frame previously designated psbN

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Synthetic biology in plastids

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Development of chloroplast transformation for five species in the genus Nicotiana

inferred← citeshttps://doi.org/10.1111/tpj.70685openalex-snapshot

Nuclear DNA of plastid origin (NUPTs), neglected driver of genome variation and evolutionary innovation

inferred← citeshttps://doi.org/10.1146/annurev-arplant-050213-040212openalex-snapshot

Engineering Plastid Genomes: Methods, Tools, and Applications in Basic Research and Biotechnology

inferred← citeshttps://doi.org/10.1146/annurev-genet-120215-035329openalex-snapshot

Witnessing Genome Evolution: Experimental Reconstruction of Endosymbiotic and Horizontal Gene Transfer

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Gene loss and positively selected genes in chloroplast genomes reveal adaptive evolution in Styracaceae

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Towards understanding the evolution and functional diversification of DNA-containing plant organelles

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Paulinella chromatophora – rethinking the transition from endosymbiont to organelle

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Etude du rôle des protéines de la famille PPR doublement adressées à la mitochondrie et au plaste dans l'édition de l'ARN chez Arabidopsis thaliana

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