On the public citation graph

The insertion of a mitochondrial selfish element into the nuclear genome and its consequences

0 signed · 72 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.20452openalex-snapshot

Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes

inferredcites →https://doi.org/10.1002/ece3.5056openalex-snapshot

Genome streamlining via complete loss of introns has occurred multiple times in lichenized fungal mitochondria

inferredcites →https://doi.org/10.1006/jmbi.1996.0754openalex-snapshot

Two-domain structure of the td intron-encoded endonuclease I-TevI correlates with the two-domain configuration of the homing site

inferredcites →https://doi.org/10.1007/bf00317070openalex-snapshot

Evolutionarily recent transfer of a group I mitochondrial intron to telomere regions in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1007/s00239-006-0279-4openalex-snapshot

Novel Group I Introns Encoding a Putative Homing Endonuclease in the Mitochondrial cox1 Gene of Scleractinian Corals

inferredcites →https://doi.org/10.1007/s00294-014-0448-8openalex-snapshot

The intraspecific variability of mitochondrial genes of Agaricus bisporus reveals an extensive group I intron mobility combined with low nucleotide substitution rates

inferredcites →https://doi.org/10.1007/s00438-003-0962-8openalex-snapshot

A PCR-based system for highly efficient generation of gene replacement mutants in Ustilago maydis

inferredcites →https://doi.org/10.1016/0378-1119(89)90035-8openalex-snapshot

Mobile introns: definition of terms and recommended nomenclature

inferredcites →https://doi.org/10.1016/0378-1119(92)90454-wopenalex-snapshot

Multifunctional yeast high-copy-number shuttle vectors

inferredcites →https://doi.org/10.1016/j.cub.2012.03.005openalex-snapshot

Experimental Reconstruction of the Functional Transfer of Intron- Containing Plastid Genes to the Nucleus

inferredcites →https://doi.org/10.1016/j.gde.2015.09.001openalex-snapshot

The two-speed genomes of filamentous pathogens: waltz with plants

inferredcites →https://doi.org/10.1016/j.mib.2010.09.003openalex-snapshot

Mitochondrial inheritance in fungi

inferredcites →https://doi.org/10.1016/j.mrfmmm.2011.06.002openalex-snapshot

RecQ helicases in DNA double strand break repair and telomere maintenance

inferredcites →https://doi.org/10.1016/j.tcb.2007.11.008openalex-snapshot

Ustilago maydis, a new fungal model system for cell biology

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1016/s0074-7696(08)62223-8openalex-snapshot

Escape and Migration of Nucleic Acids between Chloroplasts, Mitochondria, and the Nucleus

inferredcites →https://doi.org/10.1016/s0378-1119(00)00428-5openalex-snapshot

Evolution of gene families

inferredcites →https://doi.org/10.1017/s0033583505004063openalex-snapshot

Homing endonuclease structure and function

inferredcites →https://doi.org/10.1023/a:1008987531313openalex-snapshot

Genetic diversity of Ustilago maydis strains

inferredcites →https://doi.org/10.1038/nature05248openalex-snapshot

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

inferredcites →https://doi.org/10.1038/nrg2146openalex-snapshot

The distribution of fitness effects of new mutations

inferredcites →https://doi.org/10.1038/nrmicro.2017.76openalex-snapshot

Evolution and genome architecture in fungal plant pathogens

inferredcites →https://doi.org/10.1073/pnas.0803466105openalex-snapshot

A genome-wide view of the spectrum of spontaneous mutations in yeast

inferredcites →https://doi.org/10.1073/pnas.86.15.5878openalex-snapshot

Different a alleles of Ustilago maydis are necessary for maintenance of filamentous growth but not for meiosis

inferredcites →https://doi.org/10.1073/pnas.95.24.14244openalex-snapshot

Explosive invasion of plant mitochondria by a group I intron

inferredcites →https://doi.org/10.1073/pnas.96.24.13880openalex-snapshot

Recurrent invasion and extinction of a selfish gene

inferredcites →https://doi.org/10.1080/10635150600755453openalex-snapshot

Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative

inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot

APE: Analyses of Phylogenetics and Evolution in R language

inferredcites →https://doi.org/10.1093/bioinformatics/bti037openalex-snapshot

Online synonymous codon usage analyses with the ade4 and seqinR packages

inferredcites →https://doi.org/10.1093/bioinformatics/btp163openalex-snapshot

Biopython: freely available Python tools for computational molecular biology and bioinformatics

inferredcites →https://doi.org/10.1093/bioinformatics/btq413openalex-snapshot

genoPlotR: comparative gene and genome visualization in R

inferredcites →https://doi.org/10.1093/gbe/evw026openalex-snapshot

A Tale of Genome Compartmentalization: The Evolution of Virulence Clusters in Smut Fungi

inferredcites →https://doi.org/10.1093/gbe/evy023openalex-snapshot

Positively Selected Effector Genes and Their Contribution to Virulence in the Smut Fungus Sporisorium reilianum

inferredcites →https://doi.org/10.1093/genetics/148.3.1043openalex-snapshot

Organization of Chromosome Ends in Ustilago maydis. RecQ-like Helicase Motifs at Telomeric Regions

inferredcites →https://doi.org/10.1093/molbev/msi237openalex-snapshot

Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/msn067openalex-snapshot

An Improved General Amino Acid Replacement Matrix

inferredcites →https://doi.org/10.1093/molbev/msn129openalex-snapshot

Frequent, Phylogenetically Local Horizontal Transfer of the cox1 Group I Intron in Flowering Plant Mitochondria

inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

inferredcites →https://doi.org/10.1093/molbev/msr021openalex-snapshot

The Origin and Characterization of New Nuclear Genes Originating from a Cytoplasmic Organellar Genome

inferredcites →https://doi.org/10.1093/nar/25.17.3379openalex-snapshot

Homing endonucleases: keeping the house in order

inferredcites →https://doi.org/10.1093/nar/29.18.3757openalex-snapshot

Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility

inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

inferredcites →https://doi.org/10.1093/nar/gkf565openalex-snapshot

Use and misuse of correspondence analysis in codon usage studies

inferredcites →https://doi.org/10.1093/nar/gkq1157openalex-snapshot

MIPS: curated databases and comprehensive secondary data resources in 2010

inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

inferredcites →https://doi.org/10.1098/rspb.2007.1636openalex-snapshot

Ustilago maydispopulations tracked maize through domestication and cultivation in the Americas

inferredcites →https://doi.org/10.1098/rstb.2009.0286openalex-snapshot

Measurements of spontaneous rates of mutations in the recent past and the near future

inferredcites →https://doi.org/10.1101/gr.101386.109openalex-snapshot

Origins, evolution, and phenotypic impact of new genes

inferredcites →https://doi.org/10.1105/tpc.112.097261openalex-snapshot

Genome Comparison of Barley and Maize Smut Fungi Reveals Targeted Loss of RNA Silencing Components and Species-Specific Presence of Transposable Elements

inferredcites →https://doi.org/10.1105/tpc.17.00764openalex-snapshot

The Biotrophic Development of Ustilago maydis Studied by RNA-Seq Analysis

inferredcites →https://doi.org/10.1105/tpc.5.1.97openalex-snapshot

Recent Stable Insertion of Mitochondrial DNA into an Arabidopsis Polyubiquitin Gene by Nonhomologous Recombination

inferredcites →https://doi.org/10.1111/j.1365-2958.2011.07935.xopenalex-snapshot

Brh2 domain function distinguished by differential cellular responses to DNA damage and replication stress

inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03413.xopenalex-snapshot

The use of FLP‐mediated recombination for the functional analysis of an effector gene family in the biotrophic smut fungus Ustilago maydis

inferredcites →https://doi.org/10.1111/j.1574-6976.2011.00296.xopenalex-snapshot

Fungal development of the plant pathogenUstilago maydis

inferredcites →https://doi.org/10.1111/nph.15268openalex-snapshot

Virulence function of the Ustilago maydis sterol carrier protein 2

inferredcites →https://doi.org/10.1126/science.1195330openalex-snapshot

Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison

inferredcites →https://doi.org/10.1128/microbiolspec.funk-0042-2017openalex-snapshot

Repeat-Induced Point Mutation and Other Genome Defense Mechanisms in Fungi

inferredcites →https://doi.org/10.1146/annurev.bi.62.070193.003103openalex-snapshot

INTRONS AS MOBILE GENETIC ELEMENTS

inferredcites →https://doi.org/10.1186/1471-2148-11-277openalex-snapshot

Multiple recent horizontal transfers of the cox1intron in Solanaceae and extended co-conversion of flanking exons

inferredcites →https://doi.org/10.1186/1471-2148-11-324openalex-snapshot

Home and away- the evolutionary dynamics of homing endonucleases

inferredcites →https://doi.org/10.1186/1471-2148-6-94openalex-snapshot

Inteins, introns, and homing endonucleases: recent revelations about the life cycle of parasitic genetic elements.

inferredcites →https://doi.org/10.1186/1471-2164-15-891openalex-snapshot

Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens

inferredcites →https://doi.org/10.1186/1471-2164-7-98openalex-snapshot

Phylogenomic analysis of the GIY-YIG nuclease superfamily

inferredcites →https://doi.org/10.1186/s12862-017-0928-9openalex-snapshot

Evolution of group I introns in Porifera: new evidence for intron mobility and implications for DNA barcoding

inferredcites →https://doi.org/10.1371/journal.pone.0014048openalex-snapshot

The Agaricus bisporus cox1 Gene: The Longest Mitochondrial Gene and the Largest Reservoir of Mitochondrial Group I Introns

inferredcites →https://doi.org/10.1371/journal.pone.0022594openalex-snapshot

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

inferredcites →https://doi.org/10.1371/journal.pone.0207062openalex-snapshot

Annotation and analysis of the mitochondrial genome of Coniothyrium glycines, causal agent of red leaf blotch of soybean, reveals an abundance of homing endonucleases

inferredcites →https://doi.org/10.1371/journal.ppat.1002955openalex-snapshot

Ustilago maydis: Dissecting the Molecular Interface between Pathogen and Plant

inferredcites →https://doi.org/10.3389/fphys.2013.00297openalex-snapshot

Dual targeting of peroxisomal proteins

inferredcites →https://doi.org/10.5962/p.417141openalex-snapshot

Intercompatibility and the species concept in the saprobic basidiomycotina

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41598-020-70611-zopenalex-snapshot

First characterization of the complete mitochondrial genome of fungal plant-pathogen Monilinia laxa which represents the mobile intron rich structure

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.