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Patterns and assembly processes of planktonic and sedimentary bacterial community differ along a trophic gradient in freshwater lakes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Recovery of lakes and coastal marine ecosystems from eutrophication: A global meta‐analysis
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Growth, natural relationships, cellular fatty acids and metabolic adaptation of sulfate-reducing bacteria that utilize long-chain alkanes under anoxic conditions
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Microbial Community Composition and Putative Biogeochemical Functions in the Sediment and Water of Tropical Granite Quarry Lakes
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The heterogeneity of composition and assembly processes of the microbial community between different nutrient loading lake zones in Taihu Lake
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Eutrophication of Lake Waters in China: Cost, Causes, and Control
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Does dispersal ability affect the relative importance of environmental control and spatial structuring of littoral macroinvertebrate communities?
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Biodiversity, Species Interactions and Ecological Networks in a Fragmented World
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Bacterioplankton assembly and interspecies interaction indicating increasing coastal eutrophication
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Network analysis reveals seasonal variation of co-occurrence correlations between Cyanobacteria and other bacterioplankton
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Prokaryotic photosynthesis and phototrophy illuminated
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Competitive Exclusion in Herbaceous Vegetation
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Using network analysis to explore co-occurrence patterns in soil microbial communities
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Secondary structure improves OTU assignments of 16S rRNA gene sequences
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The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink
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Stochastic and deterministic assembly processes in subsurface microbial communities
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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
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Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes
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Quantifying community assembly processes and identifying features that impose them
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Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant
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Warming and nutrient enrichment in combination increase stochasticity and beta diversity of bacterioplankton assemblages across freshwater mesocosms
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Functional cartography of complex metabolic networks
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Microbial community structure and its functional implications
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Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments
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Nutrient enrichment modifies temperature-biodiversity relationships in large-scale field experiments
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QIIME allows analysis of high-throughput community sequencing data
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Classes of complex networks defined by role-to-role connectivity profiles
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The role of ecological theory in microbial ecology
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Beyond biogeographic patterns: processes shaping the microbial landscape
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Microbial interactions: from networks to models
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Soil bacterial networks are less stable under drought than fungal networks
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Keystone taxa as drivers of microbiome structure and functioning
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Bacterial diversity patterns along a gradient of primary productivity
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Global patterns in bacterial diversity
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Drought mediates the importance of stochastic community assembly
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The modularity of pollination networks
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A latitudinal diversity gradient in planktonic marine bacteria
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Stochasticity, succession, and environmental perturbations in a fluidic ecosystem
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Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe
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Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests
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Search and clustering orders of magnitude faster than BLAST
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UCHIME improves sensitivity and speed of chimera detection
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An ecological perspective on bacterial biodiversity
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Disentangling the importance of ecological niches from stochastic processes across scales
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Predictable communities of soil bacteria in relation to nutrient concentration and successional stage in a laboratory culture experiment
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A monotonically declining elevational pattern of bacterial diversity in freshwater lake sediments
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Metacommunity organisation, spatial extent and dispersal in aquatic systems: patterns, processes and prospects
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A meta‐analysis of nestedness and turnover components of beta diversity across organisms and ecosystems
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A new method for non‐parametric multivariate analysis of variance
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The metacommunity concept: a framework for multi‐scale community ecology
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Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species
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Disentangling niche and neutral influences on community assembly: assessing the performance of community phylogenetic structure tests
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Microbial diversity–productivity relationships in aquatic ecosystems
inferredcites →https://doi.org/10.1111/j.1574-6941.2009.00772.xopenalex-snapshot
Bacterial diversity of water and sediment in the Changjiang estuary and coastal area of the East China Sea
inferredcites →https://doi.org/10.1111/j.1758-2229.2011.00308.xopenalex-snapshot
Macroecology of unicellular organisms – patterns and processes
inferredcites →https://doi.org/10.1111/oik.01493openalex-snapshot
Assessing the relative importance of neutral stochasticity in ecological communities
inferredcites →https://doi.org/10.1126/science.1187820openalex-snapshot
Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments
inferredcites →https://doi.org/10.1126/science.aab3916openalex-snapshot
Worldwide evidence of a unimodal relationship between productivity and plant species richness
inferredcites →https://doi.org/10.1126/science.aad2602openalex-snapshot
The ecology of the microbiome: Networks, competition, and stability
inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.02869-05openalex-snapshot
Microbial Diversity in Water and Sediment of Lake Chaka, an Athalassohaline Lake in Northwestern China
inferredcites →https://doi.org/10.1128/aem.03990-15openalex-snapshot
Functional Responses of Salt Marsh Microbial Communities to Long-Term Nutrient Enrichment
inferredcites →https://doi.org/10.1128/mmbr.00002-17openalex-snapshot
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
inferredcites →https://doi.org/10.1128/mmbr.00028-10openalex-snapshot
A Guide to the Natural History of Freshwater Lake Bacteria
inferredcites →https://doi.org/10.1128/mmbr.00051-12openalex-snapshot
Patterns and Processes of Microbial Community Assembly
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110316-022821openalex-snapshot
Ecological Networks Across Environmental Gradients
inferredcites →https://doi.org/10.1146/annurev.earth.25.1.403openalex-snapshot
SEDIMENT BACTERIA: Who's There, What Are They Doing, and What's New?
inferredcites →https://doi.org/10.1146/annurev.ecolsys.33.010802.150448openalex-snapshot
Phylogenies and Community Ecology
inferredcites →https://doi.org/10.1186/s40168-017-0388-xopenalex-snapshot
Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River
inferredcites →https://doi.org/10.1360/972013-751openalex-snapshot
Structure of functional ecological networks of soil microbial communities for nitrogen transformations and their response to cropping in major soils in eastern China
inferredcites →https://doi.org/10.1890/0012-9658(2001)082[2381:witorb]2.0.co;2openalex-snapshot
WHAT IS THE OBSERVED RELATIONSHIP BETWEEN SPECIES RICHNESS AND PRODUCTIVITY?
inferredcites →https://doi.org/10.1890/07-1228.1openalex-snapshot
PERTURBATIONS ALTER COMMUNITY CONVERGENCE, DIVERGENCE, AND FORMATION OF MULTIPLE COMMUNITY STATES
inferredcites →https://doi.org/10.1890/09-1016.1openalex-snapshot
The productivity–diversity relationship: varying aims and approaches
inferredcites →https://doi.org/10.1890/es10-00117.1openalex-snapshot
Using null models to disentangle variation in community dissimilarity from variation in α-diversity
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Resource Competition and Community Structure.
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Resource Competition and Community Structure
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R: A Language and Environment for Statistical Computing
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A method of linking multivariate community structure to environmental variables
inferredcites →https://doi.org/10.3389/978-2-88919-939-6openalex-snapshot
Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments
inferredcites →https://doi.org/10.3389/fmicb.2012.00417openalex-snapshot
Fundamentals of Microbial Community Resistance and Resilience
inferredcites →https://doi.org/10.3389/fmicb.2015.00370openalex-snapshot
Estimating and mapping ecological processes influencing microbial community assembly
inferredcites →https://doi.org/10.3389/fmicb.2016.01044openalex-snapshot
Editorial: Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments
inferredcites →https://doi.org/10.3390/w10081075openalex-snapshot
Abundant and Rare Bacterioplankton in Freshwater Lakes Subjected to Different Levels of Tourism Disturbances
inferredcites →https://doi.org/10.4319/lo.1977.22.2.0361openalex-snapshot
A trophic state index for lakes1
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Eutrophication of freshwater and marine ecosystems
inferredcites →https://doi.org/10.5897/ajmr11.1416openalex-snapshot
Bacterial community compositions in response to sediment properties in urban lakes of Nanjing
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Spatiotemporal Patterns and Interactions Dynamics in Plankton Microbial Sub-Communities in the Yangtze River Estuary and Their Distinct Contributions to Network Stability
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The stability of microbial community enhanced in the rhizosphere of Phragmites australis at the regional scale across typical plain and plateau in China
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Deterministic processes drive national‐scale patterns in lake surface sediment bacteria and eukaryotic assemblage composition
inferred← citeshttps://doi.org/10.1002/lno.12328openalex-snapshot
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Higher alpha and gamma, but not beta diversity in tropical than in Mediterranean temporary ponds: A multi‐taxon spatiotemporal approach
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How ecological regimes and emergent macrophytes determine sediment microbial communities: A new insight into typical eutrophic shallow lakes
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Bacterial composition in Swedish raw drinking water reveals three major interacting ubiquitous metacommunities
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Potentials, Threats, and Sustainable Conservation Strategies of Plankton and Macrophytes
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Composition and assembly of bacterial communities in surface and deeper sediments from aquaculture-influenced sites in Eastern Lake Taihu, China
inferred← citeshttps://doi.org/10.1007/s00248-021-01767-yopenalex-snapshot
Contrasting Patterns of the Resident and Active Rhizosphere Bacterial Communities of Phragmites Australis
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Abundant and Rare Taxa of Planktonic Fungal Community Exhibit Distinct Assembly Patterns Along Coastal Eutrophication Gradient
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Newly formed riparian microhabitats simplify bacterial community structure and diversity
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Different Adaption Strategies of Abundant and Rare Microbial Communities in Sediment and Water of East Dongting Lake
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Habitats modulate influencing factors shaping the spatial distribution of bacterial communities along a Tibetan Plateau riverine wetland
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inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.173298openalex-snapshot
Spatial distribution and assembly processes of bacterial communities in riverine and coastal ecosystems of a rapidly urbanizing megacity in China
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.173357openalex-snapshot
Submerged macrophyte restoration enhanced microbial carbon utilization in shallow lakes
inferred← citeshttps://doi.org/10.1016/j.temicr.2026.100062openalex-snapshot
Bacterial diversity, co-occurrence networks, and assembly processes differed between sediment and water in alpine karst springs of the Baiyi Basin, southwest China
inferred← citeshttps://doi.org/10.1016/j.watbs.2025.100541openalex-snapshot
Elevational and anthropogenic gradients drive divergent assembly mechanisms of free-living and particle-attached bacterioplankton in Chinese lakes
inferred← citeshttps://doi.org/10.1016/j.watbs.2026.100609openalex-snapshot
Regulatory roles of core microorganisms on nutrients in aquaculture pond sediments: Implications for sustainable aquaculture management in China
inferred← citeshttps://doi.org/10.1016/j.watres.2023.120252openalex-snapshot
Habitat-specific regulation of bacterial community dynamics during phytoplankton bloom succession in a subtropical eutrophic lake
inferred← citeshttps://doi.org/10.1016/j.watres.2023.120977openalex-snapshot
Eutrophication increases the similarity of cyanobacterial community features in lakes and reservoirs
inferred← citeshttps://doi.org/10.1016/j.watres.2024.122516openalex-snapshot
Lake ecological restoration of vegetation removal mitigates algal blooms and alters landscape patterns of water and sediment bacteria
inferred← citeshttps://doi.org/10.1021/acs.est.5c15529openalex-snapshot
Scale-Dependent Heterogeneity Drives Microbial Insurance in Phyllosphere Algal–Bacterial Networks during Lake Eutrophication
inferred← citeshttps://doi.org/10.1021/acsestwater.1c00454openalex-snapshot
Variation of Legionella spp. with Lake Depth and Season in Two Norwegian Drinking Water Sources
inferred← citeshttps://doi.org/10.1038/s41598-025-31889-zopenalex-snapshot
Structure and community assembly of rare bacterial community in sediments of Sancha Lake
inferred← citeshttps://doi.org/10.1080/0269249x.2026.2624125openalex-snapshot
Temporal patterns of benthic microalgal community structure in a South Carolina, USA, saltmarsh
inferred← citeshttps://doi.org/10.1080/02705060.2025.2501976openalex-snapshot
Fluorescence spectral characteristics of DOM and its effects on the bacterial community structure in Bosten Lake, China
inferred← citeshttps://doi.org/10.1093/femsec/fiaa198openalex-snapshot
Stochastic processes dominate marine free-living Vibrio community assembly in a subtropical gulf
inferred← citeshttps://doi.org/10.1093/femsec/fiac051openalex-snapshot
Eutrophication in subtropical lakes reinforces the dominance of balanced-variation component in temporal bacterioplankton community heterogeneity by lessening stochastic processes
inferred← citeshttps://doi.org/10.1093/femsle/fnaf139openalex-snapshot
Assembly and interactions of denitrifying and anammox communities in a typical eutrophic lake
inferred← citeshttps://doi.org/10.1093/ismeco/ycag057openalex-snapshot
Environmental quality affects the formation of generalist and specialist taxa in microbial communities
inferred← citeshttps://doi.org/10.1111/1462-2920.15115openalex-snapshot
Eutrophication as a driver of microbial community structure in lake sediments
inferred← citeshttps://doi.org/10.1111/1462-2920.15922openalex-snapshot
Aquaculture drives distinct patterns of planktonic and sedimentary bacterial communities: insights into co‐occurrence pattern and assembly processes
inferred← citeshttps://doi.org/10.1111/1462-2920.16607openalex-snapshot
Environmental filtering governs consistent vertical zonation in sedimentary microbial communities across disconnected mountain lakes
inferred← citeshttps://doi.org/10.1111/1462-2920.70210openalex-snapshot
Spatial Heterogeneity in Methane Biogeochemistry and Prokaryotic Community Structure in Sub‐Arctic Waterbodies in Northern Canada
inferred← citeshttps://doi.org/10.1111/fwb.13732openalex-snapshot
Distinct microhabitats affect the relative balance of ecological processes shaping the spatial distribution of bacterial communities in lakeshore habitats
inferred← citeshttps://doi.org/10.1111/fwb.13735openalex-snapshot
Habitats and seasons differentiate the assembly of bacterial communities along a trophic gradient of freshwater lakes
inferred← citeshttps://doi.org/10.1111/fwb.14367openalex-snapshot
Effects of Trophic State on the Composition and Distribution of Bacteria in the Surface Sediments of Lake Taihu
inferred← citeshttps://doi.org/10.1111/jam.14720openalex-snapshot
Biogeographic patterns of abundant and rare bacterial and microeukaryotic subcommunities in connected freshwater lake zones subjected to different levels of nutrient loading
inferred← citeshttps://doi.org/10.1128/aem.00379-20openalex-snapshot
Contrasting Patterns in Diversity and Community Assembly of Phragmites australis Root-Associated Bacterial Communities from Different Seasons
inferred← citeshttps://doi.org/10.1128/aem.00717-23openalex-snapshot
Niche-Specific Restructuring of Bacterial Communities Associated with Submerged Macrophyte under Ammonium Stress
inferred← citeshttps://doi.org/10.1128/aem.01079-25openalex-snapshot
Higher variability of bacterial communities across space than over time in Antarctic lakes, and contrasting assembly processes
inferred← citeshttps://doi.org/10.1186/s12866-025-04512-4openalex-snapshot
Sub-community-level network analysis reveals distinct microbial dynamics in a lake littoral sediment
inferred← citeshttps://doi.org/10.1371/journal.pone.0258079openalex-snapshot
Diversity and distribution of sediment bacteria across an ecological and trophic gradient
inferred← citeshttps://doi.org/10.18307/2023.0316openalex-snapshot
Differences of bacterial community co-occurrence network and assembly processes between sediment and water in lakes on the Qinghai-Tibet Plateau
inferred← citeshttps://doi.org/10.18307/2023.0536openalex-snapshot
Distribution patterns and driving factors of bacterial communities in water and sediment of Lake Taihu
inferred← citeshttps://doi.org/10.18307/2024.0215openalex-snapshot
Simulation of bacterioplankton community dynamics and their environmental driving factors in overlying water during Potamogeton crispus decomposition
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2008020/v1openalex-snapshot
Environmental factors drive bacterial community (free-living vs particle-attached) assembly and more stable network in the pre-bloom period than post-bloom
inferred← citeshttps://doi.org/10.3389/fenvs.2021.731227openalex-snapshot
Bacterioplankton Richness and Composition in a Seasonal Urban River
inferred← citeshttps://doi.org/10.3389/fenvs.2022.1033160openalex-snapshot
Differences in bacterial diversity, composition, and community networks in lake water across three distinct regions on the Qinghai-Tibet Plateau
inferred← citeshttps://doi.org/10.3389/fmicb.2019.02560openalex-snapshot
Trophic Status Is Associated With Community Structure and Metabolic Potential of Planktonic Microbiota in Plateau Lakes
inferred← citeshttps://doi.org/10.3389/fmicb.2021.809834openalex-snapshot
Effects of Co-application of Cadmium-Immobilizing Bacteria and Organic Fertilizers on Houttuynia cordata and Microbial Communities in a Cadmium-Contaminated Field
inferred← citeshttps://doi.org/10.3389/fmicb.2022.841686openalex-snapshot
Salinity Is a Key Determinant for the Microeukaryotic Community in Lake Ecosystems of the Inner Mongolia Plateau, China
inferred← citeshttps://doi.org/10.3389/fmicb.2022.971437openalex-snapshot
Hydrological connectivity promotes coalescence of bacterial communities in a floodplain
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1288304openalex-snapshot
Linking ecological niches to bacterial community structure and assembly in polluted urban aquatic ecosystems
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1380805openalex-snapshot
Loss of submerged macrophytes in shallow lakes alters bacterial and archaeal community structures, and reduces their co-occurrence networks connectivity and complexity
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1409664openalex-snapshot
Comparing microbial populations from diverse hydrothermal features in Yellowstone National Park: hot springs and mud volcanoes
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1448919openalex-snapshot
Characterization of bacterial community dynamics dominated by salinity in lakes of the Inner Mongolian Plateau, China
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1554914openalex-snapshot
Sediment bacterial biogeography across reservoirs in the Hanjiang river basin, southern China: the predominant influence of eutrophication-induced carbon enrichment
inferred← citeshttps://doi.org/10.3390/d18030153openalex-snapshot
Ecological Impacts of Photovoltaic Infrastructure Construction on Coastal Salt Pan Ecosystems: A Case Study of Microbial Communities in the Tianjin’s “Salt–Solar–Fishery Synergy” System
inferred← citeshttps://doi.org/10.3390/microorganisms11112807openalex-snapshot
The Impact of Warming on Assembly Processes and Diversity Patterns of Bacterial Communities in Mesocosms
inferred← citeshttps://doi.org/10.3390/microorganisms12010032openalex-snapshot
Bacterial and Microeukaryotic Community Compositions and Their Assembly Processes in Lakes on the Eastern Qinghai-Tibet Plateau
inferred← citeshttps://doi.org/10.3390/microorganisms12122418openalex-snapshot
Biotic Interaction Underpins the Assembly Processes of the Bacterial Community Across the Sediment–Water Interface in a Subalpine Lake
inferred← citeshttps://doi.org/10.3390/microorganisms12122534openalex-snapshot
Limited Microbial Contribution in Salt Lake Sediment and Water to Each Other’s Microbial Communities
inferred← citeshttps://doi.org/10.3390/su15108151openalex-snapshot
Abiotic and Biotic Effects on Microbial Diversity of Small Water Bodies in and around Towns
inferred← citeshttps://doi.org/10.3390/w14050723openalex-snapshot
Different Assembly Patterns of Planktonic and Sedimentary Bacterial Community in a Few Connected Eutrophic Lakes
inferred← citeshttps://doi.org/10.3390/w14244097openalex-snapshot
Temporal and Spatial Variations of the Bacterial Diversity in a Deep Alkaline Lake
inferred← citeshttps://doi.org/10.3390/w17040472openalex-snapshot
Understanding the Relationship Between Water Quality and Soil Nutrient Dynamics in Qinghai Lake Through Statistical and Regression Models
inferred← citeshttps://doi.org/10.3390/w17152222openalex-snapshot
Bacterial Communities Respond to Spatiotemporal Fluctuation in Water Quality and Microcystins at Lake Taihu
inferred← citeshttps://doi.org/10.47749/t/unicamp.2020.1129018openalex-snapshot
Modelo matemático de avaliação do processo de autodepuração de matéria orgânica em reservatórios
inferred← citeshttps://doi.org/10.5194/bg-19-4639-2022openalex-snapshot
Diversity and assembly processes of microbial eukaryotic communities in Fildes Peninsula Lakes (West Antarctica)
inferred← citeshttps://doi.org/10.70675/08578691z4209z4725zab29zf1e85cf898b2openalex-snapshot
Spatio-temporal structuring of microbial communities in freshwater ecosystems
inferred← citeshttps://doi.org/10.7287/peerj.14378v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Human access and deterministic processes play a major role in structuring planktonic and sedimentary bacterial and eukaryotic communities in lakes (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.14378v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Human access and deterministic processes play a major role in structuring planktonic and sedimentary bacterial and eukaryotic communities in lakes (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.14378v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Human access and deterministic processes play a major role in structuring planktonic and sedimentary bacterial and eukaryotic communities in lakes (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.14378v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Human access and deterministic processes play a major role in structuring planktonic and sedimentary bacterial and eukaryotic communities in lakes (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.14378openalex-snapshot
Human access and deterministic processes play a major role in structuring planktonic and sedimentary bacterial and eukaryotic communities in lakes
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.