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Species delimitation and phylogeography of the Pectenia species-complex: A misunderstood case of species-pairs in lichenized fungi, where reproduction mode does not delimit lineages

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Phylogenetic relationships and taxonomy of the Leptogium lichenoides group (Collemataceae, Ascomycota) in Europe
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Takhtajan's floristic regions and foliicolous lichen biogeography: a compatibility analysis
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Sequence Insertions and ITS Data Provide Congruent Information on Roccella canariensis and R. tuberculata (Arthoniales, Euascomycetes) Phylogeny
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Does the Reproductive Strategy Affect the Transmission and Genetic Diversity of Bionts in Cyanolichens? A Case Study Using Two Closely Related Species
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PCR protocols — A guide to methods and applications
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AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS
inferredcites →https://doi.org/10.1016/j.funbio.2016.06.001openalex-snapshot
Hidden diversity before our eyes: Delimiting and describing cryptic lichen-forming fungal species in camouflage lichens (Parmeliaceae, Ascomycota)
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Cryptic species as a window on diversity and conservation
inferredcites →https://doi.org/10.1016/j.ympev.2004.11.014openalex-snapshot
Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)
inferredcites →https://doi.org/10.1016/j.ympev.2009.05.033openalex-snapshot
Coalescent methods for estimating phylogenetic trees
inferredcites →https://doi.org/10.1016/j.ympev.2011.03.020openalex-snapshot
Complex patterns of speciation in cosmopolitan “rock posy” lichens – Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)
inferredcites →https://doi.org/10.1016/j.ympev.2011.03.021openalex-snapshot
A phylogenetic analysis of the boreal lichen Mycoblastus sanguinarius (Mycoblastaceae, lichenized Ascomycota) reveals cryptic clades correlated with fatty acid profiles
inferredcites →https://doi.org/10.1016/j.ympev.2012.09.013openalex-snapshot
Multilocus phylogeny of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota): Insights on diversity, distributions, and a comparison of species tree and concatenated topologies
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1017/s0024282904013933openalex-snapshot
Phylogenetic relationships and species concepts in Parmelia s. str. ( Parmeliaceae ) inferred from nuclear ITS rDNA and β-tubulin sequences
inferredcites →https://doi.org/10.1017/s0024282907006901openalex-snapshot
The lichen genus Ramalina on the Galapagos
inferredcites →https://doi.org/10.1017/s002428290999020xopenalex-snapshot
Degelia cyanoloma (Schaer.) H. H. Blom & L. Lindblom comb. et stat. nov., a distinct species from western Europe
inferredcites →https://doi.org/10.1017/s002428291400019xopenalex-snapshot
Extended phylogeny and a revised generic classification of thePannariaceae(Peltigerales, Ascomycota)
inferredcites →https://doi.org/10.1017/s0953756201004725openalex-snapshot
The magnitude of fungal diversity: the 1.5 million species estimate revisited
inferredcites →https://doi.org/10.1046/j.1365-294x.2000.01020.xopenalex-snapshot
TCS: a computer program to estimate gene genealogies
inferredcites →https://doi.org/10.1073/pnas.0607004104openalex-snapshot
High-resolution species trees without concatenation
inferredcites →https://doi.org/10.1073/pnas.0913022107openalex-snapshot
Bayesian species delimitation using multilocus sequence data
inferredcites →https://doi.org/10.1073/pnas.1403517111openalex-snapshot
A single macrolichen constitutes hundreds of unrecognized species
inferredcites →https://doi.org/10.1080/00275514.2001.12063165openalex-snapshot
β-tubulin, ITS and group I intron sequences challenge the species pair concept inPhyscia aipoliaandP. caesia
inferredcites →https://doi.org/10.1080/01621459.1995.10476572openalex-snapshot
Bayes Factors
inferredcites →https://doi.org/10.1080/09640568.2011.575698openalex-snapshot
The potential for integration of environmental data from regional stratifications into a European monitoring framework
inferredcites →https://doi.org/10.1080/10635150390192780openalex-snapshot
Stochastic Mapping of Morphological Characters
inferredcites →https://doi.org/10.1080/10635150701701083openalex-snapshot
Species Concepts and Species Delimitation
inferredcites →https://doi.org/10.1080/10635150802580949openalex-snapshot
Comparison of Methods for Species-Tree Inference in the Sawfly Genus Neodiprion (Hymenoptera: Diprionidae)
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btq467openalex-snapshot
RDP3: a flexible and fast computer program for analyzing recombination
inferredcites →https://doi.org/10.1093/bioinformatics/btt340openalex-snapshot
Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency
inferredcites →https://doi.org/10.1093/genetics/132.2.619openalex-snapshot
A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation.
inferredcites →https://doi.org/10.1093/icb/41.1.134openalex-snapshot
Phylogeography: The History and Formation of Species
inferredcites →https://doi.org/10.1093/molbev/msj063openalex-snapshot
Testing “Species Pair” Hypotheses: Evolutionary Processes in the Lichen-Forming Species Complex Porpidia flavocoerulescens and Porpidia melinodes
inferredcites →https://doi.org/10.1093/molbev/msl170openalex-snapshot
Bayesian Estimation of Concordance among Gene Trees
inferredcites →https://doi.org/10.1093/molbev/msn083openalex-snapshot
jModelTest: Phylogenetic Model Averaging
inferredcites →https://doi.org/10.1093/molbev/msp274openalex-snapshot
Bayesian Inference of Species Trees from Multilocus Data
inferredcites →https://doi.org/10.1093/molbev/mss084openalex-snapshot
Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty
inferredcites →https://doi.org/10.1093/molbev/msu279openalex-snapshot
Unguided Species Delimitation Using DNA Sequence Data from Multiple Loci
inferredcites →https://doi.org/10.1093/nar/gkq321openalex-snapshot
ALTER: program-oriented conversion of DNA and protein alignments
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026092openalex-snapshot
Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit
inferredcites →https://doi.org/10.1093/sysbio/45.4.524openalex-snapshot
Testing for Phylogenetic Conflict Among Molecular Data Sets in the Tribe Triticeae (Gramineae)
inferredcites →https://doi.org/10.1093/sysbio/syq056openalex-snapshot
Species Delimitation under the General Lineage Concept: An Empirical Example Using Wild North American Hops (Cannabaceae: Humulus lupulus)
inferredcites →https://doi.org/10.1093/sysbio/syq085openalex-snapshot
Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection
inferredcites →https://doi.org/10.1093/sysbio/syr071openalex-snapshot
Evaluation of a Bayesian Coalescent Method of Species Delimitation
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1109/gce.2010.5676129openalex-snapshot
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
inferredcites →https://doi.org/10.1111/evo.12374openalex-snapshot
HOST SWITCHING PROMOTES DIVERSITY IN HOST-SPECIALIZED MYCOPARASITIC FUNGI: UNCOUPLED EVOLUTION IN THEBIATOROPSIS-USNEASYSTEM
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb01514.xopenalex-snapshot
A MULTILOCUS GENEALOGICAL APPROACH TO PHYLOGENETIC SPECIES RECOGNITION IN THE MODEL EUKARYOTE NEUROSPORA
inferredcites →https://doi.org/10.1111/j.1095-8312.2007.00810.xopenalex-snapshot
Parmelina quercina (Parmeliaceae, Lecanorales) includes four phylogenetically supported morphospecies
inferredcites →https://doi.org/10.1111/j.1095-8339.1975.tb01653.xopenalex-snapshot
Reproductive strategies in lichens
inferredcites →https://doi.org/10.1111/j.1096-0031.2009.00240.xopenalex-snapshot
Species delimitation and evolution of metal bioaccumulation in the lichenized Acarospora smaragdula (Ascomycota, Fungi) complex
inferredcites →https://doi.org/10.1111/j.1365-2699.2007.01802.xopenalex-snapshot
The barriers to oceanic island radiation in bryophytes: insights from the phylogeography of the moss Grimmia montana
inferredcites →https://doi.org/10.1111/j.1365-2699.2010.02440.xopenalex-snapshot
Macaronesia: a source of hidden genetic diversity for post-glacial recolonization of western Europe in the leafy liverwort Radula lindenbergiana
inferredcites →https://doi.org/10.1111/jbi.12583openalex-snapshot
Macaronesia is a departure gate of anagenetic speciation in the moss genus Rhynchostegiella
inferredcites →https://doi.org/10.1111/mec.13636openalex-snapshot
Escape from the cryptic species trap: lichen evolution on both sides of a cyanobacterial acquisition event
inferredcites →https://doi.org/10.11646/phytotaxa.159.4.3openalex-snapshot
A new endemic Ramalina species from the Canary Islands (Ascomycota, Lecanorales)
inferredcites →https://doi.org/10.1186/1471-2105-7-88openalex-snapshot
SIMMAP: Stochastic character mapping of discrete traits on phylogenies
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1371/journal.pone.0039683openalex-snapshot
Transoceanic Dispersal and Subsequent Diversification on Separate Continents Shaped Diversity of the Xanthoparmelia pulla Group (Ascomycota)
inferredcites →https://doi.org/10.1371/journal.pone.0052245openalex-snapshot
Using Phylogenetic and Coalescent Methods to Understand the Species Diversity in the Cladia aggregata Complex (Ascomycota, Lecanorales)
inferredcites →https://doi.org/10.1371/journal.pone.0065576openalex-snapshot
Dating the Diversification of the Major Lineages of Ascomycota (Fungi)
inferredcites →https://doi.org/10.1371/journal.pone.0124625openalex-snapshot
Coalescent-Based Species Delimitation Approach Uncovers High Cryptic Diversity in the Cosmopolitan Lichen-Forming Fungal Genus Protoparmelia (Lecanorales, Ascomycota)
inferredcites →https://doi.org/10.2307/1219689openalex-snapshot
THE SPECIES PAIR CONCEPT IN LICHENOLOGY
inferredcites →https://doi.org/10.2307/3761655openalex-snapshot
[beta]-Tubulin, ITS and Group I Intron Sequences Challenge the Species Pair Concept in Physcia aipolia and P. caesia
inferredcites →https://doi.org/10.3732/ajb.0900064openalex-snapshot
Phylogeography and divergence date estimates of a lichen species complex with a disjunct distribution pattern
inferredcites →https://doi.org/10.3732/ajb.1000230openalex-snapshot
Species delimitation and evolution in morphologically and chemically diverse communities of the lichen‐forming genus Xanthoparmelia (Parmeliaceae, Ascomycota) in western North America
inferredcites →https://doi.org/10.3732/ajb.90.4.540openalex-snapshot
Intercontinental Mediterranean disjunct mosses: morphological and molecular patterns
inferredcites →https://doi.org/10.3989/ajbm.2225openalex-snapshot
Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters
inferredcites →https://doi.org/10.5598/imafungus.2010.01.02.09openalex-snapshot
Cryptic species in lichen-forming fungi
inferredcites →https://doi.org/10.5860/choice.37-5647openalex-snapshot
Phylogeography: the history and formation of species
inferredcites →https://doi.org/10.5860/choice.39-2183openalex-snapshot
MacClade 4.0: analysis of phylogeny and character evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Phylogenetic assessment and taxonomic revision of Scytalidium (Helotiales, Leotiomycetes)
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Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris
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Revealing the non-overlapping characteristics between original centers and genetic diversity of Purpureocillium lilacinum
inferred← citeshttps://doi.org/10.1038/s41598-024-74937-wopenalex-snapshot
A shift in substrate requirement might cause speciation of the lichenized fungi, Varicellaria hemisphaerica and V. lactea (Pertusariales, Ascomycota)
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A case study on the re-establishment of the cyanolichen symbiosis: where do the compatible photobionts come from?
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Automating Lichen Monitoring in Ecological Studies Using Instance Segmentation of Time-Lapse Images
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The Lichen Flora on Quercus in the Tamentout Forest of Algeria
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Discovering cryptic species in the Aspiciliella intermutans complex (Megasporaceae, Ascomycota) – First results using gene concatenation and coalescent-based species tree approaches
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DNA sequence-based identification and barcoding of a morphologically highly plastic lichen forming fungal genus (Parmotrema, Parmeliaceae) from the tropics
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Isolation of abiotic stress tolerant isolate of Purpureocillium lilacinum (Thom) from Kerala state, India and their insecticidal activity against Greater wax moth, Galleria melonella
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New data on lichen flora of the Edough Peninsula in north-eastern Algeria
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A species on a tightrope: Establishment limitations of an endangered lichen in a fragmented Mediterranean landscape
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High species richness in the lichen genus Peltigera (Ascomycota, Lecanoromycetes): 34 species in the dolichorhizoid and scabrosoid clades of section Polydactylon, including 24 new to science
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Notulae to the Italian flora of algae, bryophytes, fungi and lichens: 12
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Bibliografía botánica ibérica, 2017. Líquenes
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