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The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths

https://doi.org/10.1016/j.gene.2005.01.008
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Use of Mitogenomic Information in Teleostean Molecular Phylogenetics: A Tree-Based Exploration under the Maximum-Parsimony Optimality Criterion
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The Biology of Biodiversity
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Mitochondrial Molecular Clocks and the Origin of Euteleostean Biodiversity: Familial Radiation of Perciforms May Have Predated the Cretaceous/Tertiary Boundary
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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
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Model of Amino Acid Substitution in Proteins Encoded by Mitochondrial DNA
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Genomic clocks and evolutionary timescales
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Une nouvelle espèce de cœlacanthe. Preuves génétiques et morphologiques
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Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the “ancient fish”
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The fossil record
inferredcites →https://doi.org/10.1023/a:1007524929593openalex-snapshot
Are the Indonesian and Western Indian Ocean Coelacanths Conspecific: A Prediction
inferredcites →https://doi.org/10.1023/a:1007533629132openalex-snapshot
The Second Recorded Living Coelacanth from North Sulawesi
inferredcites →https://doi.org/10.1038/26328openalex-snapshot
A home from home for coelacanths
inferredcites →https://doi.org/10.1038/26376openalex-snapshot
Indonesian ‘king of the sea’ discovered
inferredcites →https://doi.org/10.1038/nrg1020openalex-snapshot
The modern molecular clock
inferredcites →https://doi.org/10.1073/pnas.0334222100openalex-snapshot
Placental mammal diversification and the Cretaceous–Tertiary boundary
inferredcites →https://doi.org/10.1073/pnas.76.4.1967openalex-snapshot
Rapid evolution of animal mitochondrial DNA.
inferredcites →https://doi.org/10.1073/pnas.96.22.12616openalex-snapshot
Two living species of coelacanths?
inferredcites →https://doi.org/10.1080/10635150290102456openalex-snapshot
Divergence Time and Evolutionary Rate Estimation with Multilocus Data
inferredcites →https://doi.org/10.1080/10635150490423430openalex-snapshot
Southern Hemisphere Biogeography Inferred by Event-Based Models: Plant versus Animal Patterns
inferredcites →https://doi.org/10.1093/bioinformatics/13.5.555openalex-snapshot
PAML: a program package for phylogenetic analysis by maximum likelihood
inferredcites →https://doi.org/10.1093/bioinformatics/18.3.502openalex-snapshot
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
inferredcites →https://doi.org/10.1093/bioinformatics/btg193openalex-snapshot
A hidden Markov model for progressive multiple alignment
inferredcites →https://doi.org/10.1093/genetics/146.3.995openalex-snapshot
The Complete DNA Sequence of the Mitochondrial Genome of a “Living Fossil,” the Coelacanth (Latimeria chalumnae)
inferredcites →https://doi.org/10.1093/jhered/93.3.157openalex-snapshot
The Wilhelmine E. Key 2001 Invitational Lecture. Estimation of Divergence Times for a Few Mammalian and Several Primate Species
inferredcites →https://doi.org/10.1093/molbev/msg050openalex-snapshot
Estimation of Divergence Times for Major Lineages of Primate Species
inferredcites →https://doi.org/10.1093/molbev/msg172openalex-snapshot
Timing the Origin of New World Monkeys
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025888openalex-snapshot
Models of amino acid substitution and applications to mitochondrial protein evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026288openalex-snapshot
Molecular Phylogeny of Osteoglossoids: A New Model for Gondwanian Origin and Plate Tectonic Transportation of the Asian Arowana
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040259openalex-snapshot
Phylogenetic test of the molecular clock and linearized trees.
inferredcites →https://doi.org/10.1093/sysbio/46.1.126openalex-snapshot
Mitochondrial DNA Rates and Biogeography in European Newts (Genus Euproctus)
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DISTANCE METHODS FOR INFERRING PHYLOGENIES: A JUSTIFICATION
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Alternative global Cretaceous paleogeography
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Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution.
inferredcites →https://doi.org/10.5860/choice.29-2108openalex-snapshot
Living fossil: the story of the coelacanth

What points at this work

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Genomic organisation of the seven ParaHox genes of coelacanths
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Transcriptional activity of transposable elements in coelacanth
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Mitogenomic analysis for coelacanths (Latimeria chalumnae) caught in Tanzania
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Extremely slow rate of evolution in the HOX cluster revealed by comparison between Tanzanian and Indonesian coelacanths
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High altitude adaptation of the schizothoracine fishes (Cyprinidae) revealed by the mitochondrial genome analyses
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Genome size, GC percentage and 5mC level in the Indonesian coelacanth Latimeria menadoensis
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Speciation of two sympatric coastal fish species, Girella punctata and Girella leonina (Perciformes, Kyphosidae)
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Evolutionary trajectory of TRPM2 channel activation by adenosine diphosphate ribose and calcium
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Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor
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Single-male paternity in coelacanths
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Freshwater mussels house a diverse mussel-associated leech assemblage
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A thirteen-million-year divergence between two lineages of Indonesian coelacanths
inferred← citeshttps://doi.org/10.1073/pnas.1115675108openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/1471-2148-9-175openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/1471-2148-9-194openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/1471-2164-14-538openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12862-014-0169-0openalex-snapshot
Phylogenetic informativeness reconciles ray-finned fish molecular divergence times
inferred← citeshttps://doi.org/10.1186/s12862-015-0309-1openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12862-017-0958-3openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12862-022-02043-4openalex-snapshot
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inferred← citeshttps://doi.org/10.1266/ggs.81.29openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pone.0086861openalex-snapshot
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inferred← citeshttps://doi.org/10.1534/genetics.111.127324openalex-snapshot
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inferred← citeshttps://doi.org/10.1644/06-mamm-a-437.1openalex-snapshot
A Dated Phylogeny of Marsupials Using a Molecular Supermatrix and Multiple Fossil Constraints
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inferred← citeshttps://doi.org/10.3389/fcell.2021.772625openalex-snapshot
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New insights on early evolution of spiny-rayed fishes (Teleostei: Acanthomorpha)
inferred← citeshttps://doi.org/10.3389/fmars.2021.755275openalex-snapshot
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3D ecological niche models outperform 2D in predicting coelacanth (Latimeria spp.) habitat
inferred← citeshttps://doi.org/10.3390/genes10010038openalex-snapshot
Highly Resolved Phylogenetic Relationships within Order Acipenseriformes According to Novel Nuclear Markers
inferred← citeshttps://doi.org/10.3390/genes10080622openalex-snapshot
The Molecular Evolution of Circadian Clock Genes in Spotted Gar (Lepisosteus oculatus)
inferred← citeshttps://doi.org/10.3390/genes11101164openalex-snapshot
Ploidy Levels and Fitness-Related Traits in Purebreds and Hybrids Originating from Sterlet (Acipenser ruthenus) and Unusual Ploidy Levels of Siberian Sturgeon (A. baerii)
inferred← citeshttps://doi.org/10.35800/jitpt.4.2.2019.24231openalex-snapshot
Kondisi fisik kelautan habitat ditemukannya Latimeria menadoensis di selatan Teluk Manado
inferred← citeshttps://doi.org/10.5047/absm.2009.00204.0001openalex-snapshot
Ecology of Anguilliform Leptocephali: Remarkable Transparent Fish Larvae of the Ocean Surface Layer
inferred← citeshttps://doi.org/10.5686/jjzwm.17.79openalex-snapshot
The Differences of the Functional-morphological Strategy between the First and Second Dorsal Fins of the Living Coelacanth (Latimeria chalumnae)
inferred← citeshttps://doi.org/10.5983/nl2008jsce.38.83openalex-snapshot
inferred← citeshttps://doi.org/10.5983/nl2008jsce.42.87openalex-snapshot
inferred← citeshttps://doi.org/10.6084/m9.figshare.20294481openalex-snapshot
Additional file 1 of Species delimitation and coexistence in an ancient, depauperate vertebrate clade
inferred← citeshttps://doi.org/10.7717/peerj.5909openalex-snapshot
Postmortem transport in fossil and modern shelled cephalopods
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