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Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Witnessing the evolution of transcription in mitochondria: the mitochondrial genome of the primitive brown alga Pylaiella littoralis (L.) Kjellm. encodes a T7-like RNA polymerase
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Mitochondrial DNA from the liverwort Marchantia polymorpha : circularly permuted linear molecules, head-to-tail concatemers, and a 5′ protein 1 1Edited by N.-M. Chua
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Single Nucleotide +1 Frameshifts in an Apparently FunctionalMitochondrial Cytochrome b Gene in Ants of the Genus Polyrhachis
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Recoding of Translation in Turtle Mitochondrial Genomes: Programmed Frameshift Mutations and Evidence of a Modified Genetic Code
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The Complete Sequence of a Brown Algal Mitochondrial Genome, the Ectocarpale Pylaiella littoralis (L.) Kjellm.
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Complete mitochondrial genomes of the three brown algae (Heterokonta: Phaeophyceae) Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis
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Mitochondrial genome sequences and comparative genomics of Phytophthora ramorum and P. sojae
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Recurrent invasion of mitochondrial group II introns in specimens of Pylaiella littoralis (brown alga), collected worldwide
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Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes
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The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression
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Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage
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Mitochondrial DNA sequence variation of four Saccharina species (Laminariales, Phaeophyceae) growing in Japan
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Double hairpin elements and tandem repeats in the non-coding region of Adenoides eludens chloroplast gene minicircles
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Mitochondrial genomes: anything goes
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EMBOSS: The European Molecular Biology Open Software Suite
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The mitochondrial Pylaiella littoralis nad11 gene contains only the N-terminal FeS-binding domain
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The mitochondrial genome of the brown alga Laminaria digitata: a comparative analysis
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An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
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The Complete Mitochondrial Genome Sequence of the Haptophyte Emiliania huxleyi and its Relation to Heterokonts
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The Complete Mitochondrial Genome Sequence of the Haptophyte Emiliania huxleyi and its Relation to Heterokonts (Supplement)
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A Linear Molecule with Two Large Inverted Repeats: The Mitochondrial Genome of the Stramenopile Proteromonas lacertae
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
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The mitochondrial genome of the stramenopile alga Chrysodidymus synuroideus. Complete sequence, gene content and genome organization
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The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region
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Extensive frameshift at all AGG and CCC codons in the mitochondrial cytochrome c oxidase subunit 1 gene of Perkinsus marinus (Alveolata; Dinoflagellata)
inferredcites →https://doi.org/10.1093/oso/9780198577133.003.0019openalex-snapshot
Stramenopiles: Chromophytes From A Protistan Perspective
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026274openalex-snapshot
Double-Hairpin Elements in the Mitochondrial DNA of Allomyces: Evidence for Mobility
inferredcites →https://doi.org/10.1099/ijs.0.02594-0openalex-snapshot
Highly organized structure in the non-coding region of the psbA minicircle from clade C Symbiodinium
inferredcites →https://doi.org/10.1101/gr.10.4.577openalex-snapshot
PipMaker—A Web Server for Aligning Two Genomic DNA Sequences
inferredcites →https://doi.org/10.1101/gr.8.3.195openalex-snapshot
Consed: A Graphical Tool for Sequence Finishing
inferredcites →https://doi.org/10.1111/j.1550-7408.2005.00053.xopenalex-snapshot
The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists
inferredcites →https://doi.org/10.1126/science.1072104openalex-snapshot
Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes
inferredcites →https://doi.org/10.1126/science.1101156openalex-snapshot
The Genome of the Diatom Thalassiosira Pseudonana : Ecology, Evolution, and Metabolism
inferredcites →https://doi.org/10.1127/1438-9134/2010/0136-0261openalex-snapshot
Comparative analysis of complete mitochondrial genome sequences from two geographically distinct Heterosigma akashiwo (Raphidophyceae) strains
inferredcites →https://doi.org/10.1186/1471-2164-10-132openalex-snapshot
The mitochondrial and plastid genomes of Volvox carteri: bloated molecules rich in repetitive DNA
inferredcites →https://doi.org/10.1186/1471-2164-10-591openalex-snapshot
The mitochondrial genomes of sponges provide evidence for multiple invasions by Repetitive Hairpin-forming Elements (RHE)
inferredcites →https://doi.org/10.1186/1471-2164-9-215openalex-snapshot
Complete Sequence and Analysis of the Mitochondrial Genome of Hemiselmis andersenii CCMP644 (Cryptophyceae)
inferredcites →https://doi.org/10.14601/phytopathol_mediterr-14998u1.29openalex-snapshot
BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
inferredcites →https://doi.org/10.2307/1223375openalex-snapshot
The Chromophyte Algae: Problems and Perspectives
inferredcites →https://doi.org/10.2307/3762082openalex-snapshot
The Mitochondrial Genome of Saprolegnia ferax: Organization, Gene Content and Nucleotide Sequence
inferredcites →https://doi.org/10.3732/ajb.91.10.1508openalex-snapshot
Biology and systematics of heterokont and haptophyte algae

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Haslea nusantara (Bacillariophyceae), a new blue diatom from the Java Sea, Indonesia: morphology, biometry and molecular characterization
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Metabolism and Transcriptome Stress in Diatom Phaeodactylum tricornutum for Value‐Added Products
inferred← citeshttps://doi.org/10.1007/978-1-4614-1531-2_116openalex-snapshot
Mitochondrial Genomes of Chromists (Stramenopiles, Haptophytes and Cryptophytes)
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Mitochondrial Genomes of Chromists (Stramenopiles, Haptophytes, and Cryptophytes)
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Reconstructing Dynamic Evolutionary Events in Diatom Nuclear and Organelle Genomes
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Carbon Fixation in Diatoms
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Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms)
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Chromosome-Scale Genome Assembly of the Marine Oleaginous Diatom Fistulifera solaris
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Construction and comparative analysis of mitochondrial genome in the brown tide forming alga Aureococcus anophagefferens (Pelagophyceae, Ochrophyta)
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Mitochondrial genome of the harmful algal bloom species Odontella regia (Mediophyceae, Bacillariophyta)
inferred← citeshttps://doi.org/10.1007/s10811-021-02461-9openalex-snapshot
Development of a high-resolution molecular marker for tracking Pseudo-nitzschia pungens genetic diversity through comparative analysis of mitochondrial genomes
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The Ectocarpus Genome and Brown Algal Genomics
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Evolution of Mitochondrial Introns in Plants and Photosynthetic Microbes
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Rapid method for generating designer algal mitochondrial genomes
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A removable and cosmopolitan dsRNA Toti-like virus causes asymptomatic but productive infection in a model diatom strain
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Morphological and molecular identification reveals that waters from an isolated oasis in Tamanrasset (extreme South of Algerian Sahara) are colonized by opportunistic and pollution-tolerant diatom species
inferred← citeshttps://doi.org/10.1016/j.foodchem.2019.06.004openalex-snapshot
Phaeodactylum tricornutum microalgae as a rich source of omega-3 oil: Progress in lipid induction techniques towards industry adoption
inferred← citeshttps://doi.org/10.1016/j.molp.2018.08.005openalex-snapshot
Genome Annotation of a Model Diatom Phaeodactylum tricornutum Using an Integrated Proteogenomic Pipeline
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Inheritance of Mitochondrial DNA in the Pennate Diatom Haslea ostrearia (Naviculaceae) during Auxosporulation Suggests a Uniparental Transmission
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Unorthodox features in two venerid bivalves with doubly uniparental inheritance of mitochondria
inferred← citeshttps://doi.org/10.1038/s41598-021-95106-3openalex-snapshot
Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom
inferred← citeshttps://doi.org/10.1038/s41598-026-58736-zopenalex-snapshot
Genomic investigations of Plocamiomonas psychrophila and Dictyochophyceae sp. CCMP2098 reveal organellar genome complexity in Arctic Stramenopiles
inferred← citeshttps://doi.org/10.1080/0269249x.2025.2550281openalex-snapshot
Morphology, phylogeny and chloroplast genome of Liparogyra sinensis sp. nov. (Liparogyraceae), a new species from Yunnan, China
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Complete mitochondrial genome sequence of the freshwater diatom Asterionella formosa
inferred← citeshttps://doi.org/10.1080/23802359.2018.1462669openalex-snapshot
The complete mitochondrial genome of the stalk-forming diatomDidymosphenia Geminata
inferred← citeshttps://doi.org/10.1080/23802359.2020.1735949openalex-snapshot
The mitochondrion genome of Heveochlorella roystonensis (Trebouxiophyceae) contains large direct repeats
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Complete mitochondrial genome of an oleaginous microalga Vischeria punctata (Eustigmatophyceae: Chlorobotryaceae) and phylogenetic analysis
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Comparative analysis of the mitochondrial genomes of six newly sequenced diatoms reveals group II introns in the barcoding region of cox1
inferred← citeshttps://doi.org/10.1093/bfgp/els005openalex-snapshot
Not seeing the genomes for the DNA
inferred← citeshttps://doi.org/10.1093/gbe/evab018openalex-snapshot
Mitochondrial Genome Evolution in Pelagophyte Algae
inferred← citeshttps://doi.org/10.1093/gbe/evv095openalex-snapshot
Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes
inferred← citeshttps://doi.org/10.1093/gbe/evw027openalex-snapshot
A Comparative Analysis of Mitochondrial Genomes in Eustigmatophyte Algae
inferred← citeshttps://doi.org/10.1093/gbe/evy103openalex-snapshot
Recurrent Loss, Horizontal Transfer, and the Obscure Origins of Mitochondrial Introns in Diatoms (Bacillariophyta)
inferred← citeshttps://doi.org/10.1093/jxb/err441openalex-snapshot
Chloroplast-mitochondria cross-talk in diatoms
inferred← citeshttps://doi.org/10.1093/pcp/pcz097openalex-snapshot
Organelle Studies and Proteome Analyses of Mitochondria and Plastids Fractions from the Diatom Thalassiosira pseudonana
inferred← citeshttps://doi.org/10.1098/rsob.120109openalex-snapshot
Ribosomal frameshifting used in influenza A virus expression occurs within the sequence UCC_UUU_CGU and is in the +1 direction
inferred← citeshttps://doi.org/10.1101/2022.01.13.476214openalex-snapshot
The assembled Banana dihaploid mitochondrial genome is compact with a high number of gene copies
inferred← citeshttps://doi.org/10.1101/2024.01.12.575345openalex-snapshot
A removable and cosmopolitan dsRNA Toti-like virus causes latent infection in a model diatom strain
inferred← citeshttps://doi.org/10.1101/2024.09.12.612655openalex-snapshot
DiatOmicBase, a gene-centered platform to mine functional omics data across diatom genomes
inferred← citeshttps://doi.org/10.1105/tpc.114.135194openalex-snapshot
Oil Accumulation by the Oleaginous Diatom Fistulifera solaris as Revealed by the Genome and Transcriptome
inferred← citeshttps://doi.org/10.1111/jeu.70033openalex-snapshot
Organellar Genomes of Three Globally Important Nanoplanktonic Diatoms Refine Their Taxon‐Specific Distribution and Succession Patterns in the Northwest Atlantic
inferred← citeshttps://doi.org/10.1111/jpy.12620openalex-snapshot
Phylogeny and species delineation in the marine diatomPseudo‐nitzschia(Bacillariophyta) usingcox1, LSU , and ITS 2 rRNA genes: A perspective in character evolution
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The complete chloroplast and mitochondrial genomes of the diatomNitzschia palea(Bacillariophyceae) demonstrate high sequence similarity to the endosymbiont organelles of the dinotomDurinskia baltica
inferred← citeshttps://doi.org/10.1111/jpy.13400openalex-snapshot
Phaeodactylum tricornutum : An established model species for diatom molecular research and an emerging chassis for algal synthetic biology
inferred← citeshttps://doi.org/10.1111/jpy.70114openalex-snapshot
Morphology, phylogeny, and organelle genomics of three new Rhopalodia species (Rhopalodiales, Bacillariophyceae)
inferred← citeshttps://doi.org/10.1111/tpj.70061openalex-snapshot
DiatOmicBase : a versatile gene‐centered platform for mining functional omics data in diatom research
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Integrated Regulatory and Metabolic Networks of the Marine Diatom Phaeodactylum tricornutum Predict the Response to Rising CO 2 Levels
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Mitochondrial genome structure of photosynthetic eukaryotes
inferred← citeshttps://doi.org/10.1186/1471-2164-14-534openalex-snapshot
Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae
inferred← citeshttps://doi.org/10.1186/1471-2164-14-926openalex-snapshot
Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production
inferred← citeshttps://doi.org/10.1186/1471-2164-15-604openalex-snapshot
The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles
inferred← citeshttps://doi.org/10.1186/s12864-018-4626-9openalex-snapshot
Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements
inferred← citeshttps://doi.org/10.1186/s12864-021-07999-zopenalex-snapshot
Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
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Massive RNA Editing in Ascetosporean Mitochondria
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Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae)
inferred← citeshttps://doi.org/10.1371/journal.pone.0043763openalex-snapshot
Tertiary Endosymbiosis in Two Dinotoms Has Generated Little Change in the Mitochondrial Genomes of Their Dinoflagellate Hosts and Diatom Endosymbionts
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Mitochondrial genome sequence of Phytophthora sansomeana and comparative analysis of Phytophthora mitochondrial genomes
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Improved Reference Genome for Cyclotella cryptica CCMP332, a Model for Cell Wall Morphogenesis, Salinity Adaptation, and Lipid Production in Diatoms (Bacillariophyta)
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Repeat region absent in mitochondrial genome of tube-dwelling diatom Berkeleya fennica (Naviculales, Bacillariophyceae)
inferred← citeshttps://doi.org/10.3109/19401736.2015.1089545openalex-snapshot
Complete mitochondrial genome of Fistulifera solaris (Bacillariophycidae)
inferred← citeshttps://doi.org/10.31979/etd.mved-nx78openalex-snapshot
Metabolic Network Construction Based on the Genome of the Marine Diatom Thalassiosira Pseudonana and the Analysis of Genome-wide Transcriptome Data to Investigate Triacylglyceride Accumulation
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Bolidophyceae, a Sister Picoplanktonic Group of Diatoms – A Review
inferred← citeshttps://doi.org/10.3389/fmars.2022.941506openalex-snapshot
A New Insight Into Amicula, a Genus of Tiny Marine Benthic Diatoms With the Description of Two New Tropical Species and the Largest Mitogenome Known for a Stramenopile
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Definition of a High-Resolution Molecular Marker for Tracking the Genetic Diversity of the Harmful Algal Species Eucampia zodiacus Through Comparative Analysis of Mitochondrial Genomes
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Large Differences in the Haptophyte Phaeocystis globosa Mitochondrial Genomes Driven by Repeat Amplifications
inferred← citeshttps://doi.org/10.3389/fmicb.2022.966219openalex-snapshot
The complete mitochondrial genome of Isochrysis galbana harbors a unique repeat structure and a specific trans-spliced cox1 gene
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PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum
inferred← citeshttps://doi.org/10.3389/fpls.2022.749982openalex-snapshot
Diatom Biodiversity and Speciation Revealed by Comparative Analysis of Mitochondrial Genomes
inferred← citeshttps://doi.org/10.3390/biology10040328openalex-snapshot
Haslea silbo, A Novel Cosmopolitan Species of Blue Diatoms
inferred← citeshttps://doi.org/10.3390/biology9110358openalex-snapshot
Cloning of Thalassiosira pseudonana’s Mitochondrial Genome in Saccharomyces cerevisiae and Escherichia coli
inferred← citeshttps://doi.org/10.3390/ijms25010266openalex-snapshot
Phylogeny and Evolution of Cocconeiopsis (Cocconeidaceae) as Revealed by Complete Chloroplast and Mitochondrial Genomes
inferred← citeshttps://doi.org/10.3390/md24020079openalex-snapshot
Phaeodactylum tricornutum as a Chassis: Insights into Its Potential, Challenges, and Perspectives
inferred← citeshttps://doi.org/10.3390/microorganisms10102028openalex-snapshot
Genetic Diversity and Geographical Distribution of the Red Tide Species Coscinodiscus granii Revealed Using a High-Resolution Molecular Marker
inferred← citeshttps://doi.org/10.3897/zookeys.1110.85491openalex-snapshot
More discussion of minimalist species descriptions and clarifying some misconceptions contained in Meier et al. 2021
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821719openalex-snapshot
Additional file 10 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821725openalex-snapshot
Additional file 11 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821728openalex-snapshot
Additional file 12 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821731openalex-snapshot
Additional file 13 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821734openalex-snapshot
Additional file 14 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821737openalex-snapshot
Additional file 15 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821743openalex-snapshot
Additional file 16 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821746openalex-snapshot
Additional file 1 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821749openalex-snapshot
Additional file 2 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821752openalex-snapshot
Additional file 3 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821755openalex-snapshot
Additional file 4 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821758openalex-snapshot
Additional file 5 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821764openalex-snapshot
Additional file 6 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821767openalex-snapshot
Additional file 7 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821770openalex-snapshot
Additional file 8 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.6084/m9.figshare.16821773openalex-snapshot
Additional file 9 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation
inferred← citeshttps://doi.org/10.70675/274504eez45aaz44b8za87azf43b48df5f86openalex-snapshot
Valorisation des activités biologiques de la diatomée marine Haslea ostrearia
inferred← citeshttps://doi.org/10.70675/8dac74eczafe9z4db6zbc3fz39c1be33d7dfopenalex-snapshot
Étude génomique des interactions diatomées-bactéries
inferred← citeshttps://doi.org/10.70675/a4da1458z96a5z4e02zbf12z191029b7edabopenalex-snapshot
Déterminisme des blooms d’Haslea en environnement naturel : dynamique et impacts
inferred← citeshttps://doi.org/10.7717/peerj.13607openalex-snapshot
Telomere-to-telomere genome assembly of Phaeodactylum tricornutum
inferred← citeshttps://doi.org/10.7717/peerj.20767openalex-snapshot
An alternative technique for organelle genome recovery in diatoms using culture-independent, minimal-cell whole genome amplification
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