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Supersymmetric quantum mechanics method for the Fokker–Planck equation with applications to protein folding dynamics
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Single‐Molecule Fluorescence Spectroscopy of Protein Folding
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THE weighted histogram analysis method for free‐energy calculations on biomolecules. I. The method
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Analyzing the effect of homogeneous frustration in protein folding
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Funnels, pathways, and the energy landscape of protein folding: A synthesis
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Thermodynamics of the unfolding of the cold-shock protein from Thermotoga maritima 1 1Edited by A. R. Fersht
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Topological and energetic factors: what determines the structural details of the transition state ensemble and “en-route” intermediates for protein folding? an investigation for small globular proteins
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Roles of native topology and chain-length scaling in protein folding: A simulation study with a Gō-like model
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Stochastic Dynamics and Irreversibility
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Analytical Solutions of the Fokker–Planck Equation for Generalized Morse and Hulthén Potentials
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Heavy quarkonium properties from Cornell potential using variational method and supersymmetric quantum mechanics
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Supersymmetry and quantum mechanics
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Supersymmetry and activation rates
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Variational methods via supersymmetric techniques
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Quasi-exactly solvable Fokker–Planck equations
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The Origin of Nonmonotonic Complex Behavior and the Effects of Nonnative Interactions on the Diffusive Properties of Protein Folding
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A new type of confinement for the Morse potential
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A Survey of λ Repressor Fragments from Two-State to Downhill Folding
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Variational supersymmetric approach to evaluate Fokker–Planck probability
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The Fokker–Planck equation for a bistable potential
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A closed solution to the Fokker–Planck equation applied to forecasting
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Supersymmetric variational energies of 3d confined potentials
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Exact solutions of the Fokker–Planck equation from an nth order supersymmetric quantum mechanics approach
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Exactly solvable diffusion models in the framework of the extended supersymmetric quantum mechanics
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Coordinate and time-dependent diffusion dynamics in protein folding
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Brownian motion in a field of force and the diffusion model of chemical reactions
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Morse potential energy spectra through the variational method and supersymmetry
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Supersymmetric variational energies for the confined Coulomb system
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Ion transport and channel transition in biomembranes
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The experimental survey of protein-folding energy landscapes
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Reduction of All-Atom Protein Folding Dynamics to One-Dimensional Diffusion
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Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition
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Role of Entropy in Protein Thermostability: Folding Kinetics of a Hyperthermophilic Cold Shock Protein at High Temperatures Using 19F NMR
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Intermediates and barrier crossing in a random energy model (with applications to protein folding)
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Two-State Folding Observed in Individual Protein Molecules
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Quantifying the Roughness on the Free Energy Landscape: Entropic Bottlenecks and Protein Folding Rates
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Configuration-Dependent Diffusion Dynamics of Downhill and Two-State Protein Folding
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The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function
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Supersymmetric Quantum Mechanics, Excited State Energies and Wave Functions, and the Rayleigh−Ritz Variational Principle: A Proof of Principle Study
inferredcites →https://doi.org/10.1021/jp907009ropenalex-snapshot
Proteins Fold by Subdiffusion of the Order Parameter
inferredcites →https://doi.org/10.1038/nature01060openalex-snapshot
Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy
inferredcites →https://doi.org/10.1038/nphys3677openalex-snapshot
Protein folding trajectories can be described quantitatively by one-dimensional diffusion over measured energy landscapes
inferredcites →https://doi.org/10.1038/nsb0197-10openalex-snapshot
From Levinthal to pathways to funnels
inferredcites →https://doi.org/10.1038/nsb0398-229openalex-snapshot
Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins
inferredcites →https://doi.org/10.1039/c1cp21541hopenalex-snapshot
Diffusion models of protein folding
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Solution NMR structure of the cold‐shock protein from the hyperthermophilic bacterium Thermotoga maritima
inferredcites →https://doi.org/10.1063/1.1425819openalex-snapshot
One-dimensional potential barrier model of protein folding with intermediates
inferredcites →https://doi.org/10.1063/1.1527672openalex-snapshot
First-passage time distribution and non-Markovian diffusion dynamics of protein folding
inferredcites →https://doi.org/10.1063/1.1678535openalex-snapshot
Brownian Motion of N Interacting Particles. I. Extension of the Einstein Diffusion Relation to the N-Particle Case
inferredcites →https://doi.org/10.1063/1.1697188openalex-snapshot
On the Quantum-Mechanical Fokker—Planck Equation
inferredcites →https://doi.org/10.1063/1.1853202openalex-snapshot
Supersymmetric quantum mechanics and its applications
inferredcites →https://doi.org/10.1063/1.2229206openalex-snapshot
Effective stochastic dynamics on a protein folding energy landscape
inferredcites →https://doi.org/10.1063/1.3442716openalex-snapshot
How the diffusivity profile reduces the arbitrariness of protein folding free energies
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Reactive dynamics for diffusive barrier crossing
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First passage time approach to diffusion controlled reactions
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Dynamics of reactions involving diffusive barrier crossing
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Free energy landscape for protein folding kinetics: Intermediates, traps, and multiple pathways in theory and lattice model simulations
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Diffusive dynamics of the reaction coordinate for protein folding funnels
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Fokker–Planck equation for the one-molecule distribution function in polymer mixtures and its solution
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First passage times, correlation functions, and reaction rates
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On the transition coordinate for protein folding
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Supersymmetry in quantum mechanics
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Folding of human superoxide dismutase: Disulfide reduction prevents dimerization and produces marginally stable monomers
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P versus Q : Structural reaction coordinates capture protein folding on smooth landscapes
inferredcites →https://doi.org/10.1073/pnas.0606506104openalex-snapshot
Configuration-dependent diffusion can shift the kinetic transition state and barrier height of protein folding
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Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories
inferredcites →https://doi.org/10.1073/pnas.0910390107openalex-snapshot
Coordinate-dependent diffusion in protein folding
inferredcites →https://doi.org/10.1073/pnas.1212842109openalex-snapshot
Topography of funneled landscapes determines the thermodynamics and kinetics of protein folding
inferredcites →https://doi.org/10.1073/pnas.1220699110openalex-snapshot
Quantifying the topography of the intrinsic energy landscape of flexible biomolecular recognition
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Direct measurement of sequence-dependent transition path times and conformational diffusion in DNA duplex formation
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Spin glasses and the statistical mechanics of protein folding.
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The Fokker-Planck Equation: Methods of Solution and Applications
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Black Hole Mass and Spin Coevolution by Mergers
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Ordinary differential equations in the complex domain
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SMOG@ctbp: simplified deployment of structure-based models in GROMACS
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Generalized quantum Fokker-Planck, diffusion, and Smoluchowski equations with true probability distribution functions
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Kramers problem in evolutionary strategies
inferredcites →https://doi.org/10.1103/physrevlett.52.1933openalex-snapshot
Supersymmetry and the Bistable Fokker-Planck Equation
inferredcites →https://doi.org/10.1103/physrevlett.61.1143openalex-snapshot
Supersymmetry and Bistable Soft Potentials
inferredcites →https://doi.org/10.1103/physrevlett.97.108101openalex-snapshot
Dominant Pathways in Protein Folding
inferredcites →https://doi.org/10.1119/1.19073openalex-snapshot
Fundamentals of Statistical and Thermal Physics
inferredcites →https://doi.org/10.1126/science.1085399openalex-snapshot
Single-Molecule Measurement of Protein Folding Kinetics
inferredcites →https://doi.org/10.1126/science.1219021openalex-snapshot
The Protein-Folding Problem, 50 Years On
inferredcites →https://doi.org/10.1126/science.1749933openalex-snapshot
The Energy Landscapes and Motions of Proteins
inferredcites →https://doi.org/10.1126/science.7886447openalex-snapshot
Navigating the Folding Routes
inferredcites →https://doi.org/10.1126/science.aad0637openalex-snapshot
Direct observation of transition paths during the folding of proteins and nucleic acids
inferredcites →https://doi.org/10.1137/070696325openalex-snapshot
Diffusion Maps, Reduction Coordinates, and Low Dimensional Representation of Stochastic Systems
inferredcites →https://doi.org/10.1142/s0217732304016202openalex-snapshot
SUSY SUPERPOTENTIALS FOR A CONFINED HULTHÉN POTENTIAL
inferredcites →https://doi.org/10.1142/s0219024902001511openalex-snapshot
LOGNORMAL-MIXTURE DYNAMICS AND CALIBRATION TO MARKET VOLATILITY SMILES
inferredcites →https://doi.org/10.1146/annurev.biophys.34.040204.144447openalex-snapshot
How Well Can Simulation Predict Protein Folding Kinetics and Thermodynamics?
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THEORY OF PROTEIN FOLDING: The Energy Landscape Perspective
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Quantum and classical stochastic dynamics: Exactly solvable models by supersymmetric methods
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/978-1-0716-1716-8_16openalex-snapshot
Coarse-Grained Simulations of Protein Folding: Bridging Theory and Experiments
inferred← citeshttps://doi.org/10.1007/s10773-025-05955-1openalex-snapshot
Quasi-stationary Evolution of Cubic-quintic NLSE Drop-like Solitons in DNA-protein Systems
inferred← citeshttps://doi.org/10.1016/j.chemphys.2023.112012openalex-snapshot
Stochastic model of collisional energy transfer based on the diffusion equation
inferred← citeshttps://doi.org/10.1016/j.cjph.2019.02.013openalex-snapshot
Control the relaxation properties of the diffuse bistable potential
inferred← citeshttps://doi.org/10.1016/j.optcom.2021.127743openalex-snapshot
A supersymmetric approach to the problem of micro-bending attenuation in optical waveguides
inferred← citeshttps://doi.org/10.1016/j.physa.2019.01.146openalex-snapshot
A Pseudospectral solution of a bistable Fokker–Planck equation that models protein folding
inferred← citeshttps://doi.org/10.1016/j.physa.2022.128121openalex-snapshot
Probability distribution to obtain the characteristic passage time for different tri-stable potentials
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Variational supersymmetric approach and Gram–Schmidt process for evaluating Fokker–Planck probabilities
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Ion-induced dipole interaction in confining cavities
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The Role of Electrostatics and Folding Kinetics on the Thermostability of Homologous Cold Shock Proteins
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Coordinate-Dependent Drift-Diffusion Reveals the Kinetic Intermediate Traps of Top7-Based Proteins
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Stochastic diffusion framework determines the free-energy landscape and rate from single-molecule trajectory
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Drift-diffusion (DrDiff) framework determines kinetics and thermodynamics of two-state folding trajectory and tunes diffusion models
inferred← citeshttps://doi.org/10.1063/1.5120511openalex-snapshot
Transient probability currents provide upper and lower bounds on non-equilibrium steady-state currents in the Smoluchowski picture
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Biotin-painted proteins have thermodynamic stability switched by kinetic folding routes
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Spectral analysis of Brownian motion with its rheological analogues
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Supersymmetric Quantum Mechanics Formalism in a Modeling for Protein Folding
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Variational eigenfunctions for excited states inspired by supersymmetric quantum mechanics and the Gram–Schmidt process
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Hidden Interactions: Frequency-Dependence Emulates Selection-Driven Dynamics in Evolving Populations
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Dynamics of aligning active matter: mapping to a Schrödinger equation and exact diagonalization
inferred← citeshttps://doi.org/10.2139/ssrn.4897057openalex-snapshot
Brownian Particles and Matter Waves
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Report on scipost_202212_00043v1
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Report on scipost_202212_00043v1
inferred← citeshttps://doi.org/10.21468/scipostphysproc.14.015openalex-snapshot
The impact of the diffusion parameter on the passage time of the folding process
inferred← citeshttps://doi.org/10.3390/quantum7040054openalex-snapshot
Brownian Particles and Matter Waves
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