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Observation of a Dynamic G-Tetrad Flip in Intramolecular G-Quadruplexes

https://doi.org/10.1021/acs.biochem.6b00925
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/anie.201004946openalex-snapshot
A Robust Electronic Switch Made of Immobilized Duplex/Quadruplex DNA
inferredcites →https://doi.org/10.1002/anie.201411887openalex-snapshot
Flipping a G‐Tetrad in a Unimolecular Quadruplex Without Affecting Its Global Fold
inferredcites →https://doi.org/10.1002/anie.201507034openalex-snapshot
Inverting the G‐Tetrad Polarity of a G‐Quadruplex by Using Xanthine and 8‐Oxoguanine
inferredcites →https://doi.org/10.1002/chem.200802027openalex-snapshot
EASY ROESY: Reliable Cross‐Peak Integration in Adiabatic Symmetrized ROESY
inferredcites →https://doi.org/10.1002/chem.201103593openalex-snapshot
Chemical Shifts in Nucleic Acids Studied by Density Functional Theory Calculations and Comparison with Experiment
inferredcites →https://doi.org/10.1002/prot.20449openalex-snapshot
The CCPN data model for NMR spectroscopy: Development of a software pipeline
inferredcites →https://doi.org/10.1007/bf00182274openalex-snapshot
Influence of the glycosidic torsion angle on 13C and 15N shifts in guanosine nucleotides: Investigations of G-tetrad models with alternating syn and anti bases
inferredcites →https://doi.org/10.1016/0022-2836(70)90222-6openalex-snapshot
Crystal and molecular structure of 8-bromoguanosine and 8-bromoadenosine, two purine nucleosides in the syn conformation
inferredcites →https://doi.org/10.1016/j.biochi.2010.10.011openalex-snapshot
Effects of 8-methylguanine on structure, stability and kinetics of formation of tetramolecular quadruplexes
inferredcites →https://doi.org/10.1016/s0079-6565(97)00023-xopenalex-snapshot
The use of NMR methods for conformational studies of nucleic acids
inferredcites →https://doi.org/10.1021/acs.jpcb.6b01059openalex-snapshot
Can We Execute Reliable MM-PBSA Free Energy Computations of Relative Stabilities of Different Guanine Quadruplex Folds?
inferredcites →https://doi.org/10.1021/bi0300985openalex-snapshot
Stability and Structure of Telomeric DNA Sequences Forming Quadruplexes Containing Four G-Tetrads with Different Topological Arrangements
inferredcites →https://doi.org/10.1021/bi048242popenalex-snapshot
Solution Structure of the Biologically Relevant G-Quadruplex Element in the Human c-MYC Promoter. Implications for G-Quadruplex Stabilization
inferredcites →https://doi.org/10.1021/ja00089a048openalex-snapshot
Chemical Probe for Glycosidic Conformation in Telomeric DNAs
inferredcites →https://doi.org/10.1021/ja00777a038openalex-snapshot
Flexibility and conformations of guanosine monophosphates by the Overhauser effect
inferredcites →https://doi.org/10.1021/ja200786qopenalex-snapshot
Structure of Human Telomeric DNA in Crowded Solution
inferredcites →https://doi.org/10.1021/ja401954topenalex-snapshot
Dramatic Effect of Furanose C2′ Substitution on Structure and Stability: Directing the Folding of the Human Telomeric Quadruplex with a Single Fluorine Atom
inferredcites →https://doi.org/10.1021/ja402525copenalex-snapshot
Relative Stability of Different DNA Guanine Quadruplex Stem Topologies Derived Using Large-Scale Quantum-Chemical Computations
inferredcites →https://doi.org/10.1039/9781847555298openalex-snapshot
Quadruplex Nucleic Acids
inferredcites →https://doi.org/10.1039/b314672copenalex-snapshot
Effects of an 8-bromodeoxyguanosine incorporation on the parallel quadruplex structure [d(TGGGT)]4
inferredcites →https://doi.org/10.1039/b714772bopenalex-snapshot
A hitchhiker's guide to G-quadruplex ligands
inferredcites →https://doi.org/10.1039/c003428bopenalex-snapshot
A non-empirical chromophoric interpretation of CD spectra of DNA G-quadruplex structures
inferredcites →https://doi.org/10.1073/pnas.89.18.8832openalex-snapshot
Thermodynamics and structure of a DNA tetraplex: a spectroscopic and calorimetric study of the tetramolecular complexes of d(TG3T) and d(TG3T2G3T).
inferredcites →https://doi.org/10.1093/nar/gki924openalex-snapshot
8-Methyl-2'-deoxyguanosine incorporation into parallel DNA quadruplex structures
inferredcites →https://doi.org/10.1093/nar/gkl655openalex-snapshot
Quadruplex DNA: sequence, topology and structure
inferredcites →https://doi.org/10.1093/nar/gkr031openalex-snapshot
Explaining the varied glycosidic conformational, G-tract length and sequence preferences for anti-parallel G-quadruplexes
inferredcites →https://doi.org/10.1093/nar/gks851openalex-snapshot
Strand directionality affects cation binding and movement within tetramolecular G-quadruplexes
inferredcites →https://doi.org/10.1093/nar/gkt1312openalex-snapshot
Sugar-modified G-quadruplexes: effects of LNA-, 2′F-RNA– and 2′F-ANA-guanosine chemistries on G-quadruplex structure and stability
inferredcites →https://doi.org/10.1093/nar/gkt771openalex-snapshot
Structure of the human telomere in Na+ solution: an antiparallel (2+2) G-quadruplex scaffold reveals additional diversity
inferredcites →https://doi.org/10.1093/nar/gkv815openalex-snapshot
Solution structure of a DNA quadruplex containing ALS and FTD related GGGGCC repeat stabilized by 8-bromodeoxyguanosine substitution
inferredcites →https://doi.org/10.2174/138161212799958341openalex-snapshot
G-Quadruplex Based Probes for Visual Detection and Sensing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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NMR Analyses of Carbohydrate–Water and Water–Water Interactions, Highlighting Various Hydration Behaviors of Monosaccharides Glucose, Galactose and Mannose
inferred← citeshttps://doi.org/10.1002/cbic.201700593openalex-snapshot
Ligand‐Induced Dimerization of a Truncated Parallel MYC G‐Quadruplex
inferred← citeshttps://doi.org/10.1002/cbic.201800099openalex-snapshot
Fluorine‐Mediated Editing of a G‐Quadruplex Folding Pathway
inferred← citeshttps://doi.org/10.1002/cbic.201800642openalex-snapshot
Manipulating DNA G‐Quadruplex Structures by Using Guanosine Analogues
inferred← citeshttps://doi.org/10.1002/chem.201703409openalex-snapshot
Structure–Property Relationships in CuII‐Binding Tetramolecular G‐Quadruplex DNA
inferred← citeshttps://doi.org/10.1002/chem.201801851openalex-snapshot
Loop Length Affects Syn–Anti Conformational Rearrangements in Parallel G‐Quadruplexes
inferred← citeshttps://doi.org/10.1002/chem.201904044openalex-snapshot
Sugar Puckering Drives G‐Quadruplex Refolding: Implications for V‐Shaped Loops
inferred← citeshttps://doi.org/10.1002/cphc.202100806openalex-snapshot
Time‐Dependent Hydrogen Bond Network Formation in Glycerol‐Based Deep Eutectic Solvents
inferred← citeshttps://doi.org/10.1016/j.biochi.2019.02.013openalex-snapshot
Conformational features of intramolecular G4-DNA constrained by single-nucleotide loops
inferred← citeshttps://doi.org/10.1016/j.molstruc.2026.146089openalex-snapshot
Metal ion-mediated interaction mode between an aptamer and Ochratoxin A at different pH values
inferred← citeshttps://doi.org/10.1021/acs.biochem.2c00478openalex-snapshot
8-Oxoguanine Forms Quartets with a Large Central Cavity
inferred← citeshttps://doi.org/10.1021/acs.bioconjchem.2c00292openalex-snapshot
Supernatural: Artificial Nucleobases and Backbones to Program Hybridization-Based Assemblies and Circuits
inferred← citeshttps://doi.org/10.1021/acs.joc.7b00788openalex-snapshot
Development of Green/Red-Absorbing Chromophores Based on a Coumarin Scaffold That Are Useful as Caging Groups
inferred← citeshttps://doi.org/10.1021/acs.jpcb.5c04372openalex-snapshot
Large-Scale Conformational Analysis Explains G-Quadruplex Topological Landscape
inferred← citeshttps://doi.org/10.1021/acs.jpclett.0c02969openalex-snapshot
Characterization of DNA G-quadruplex Topologies with NMR Chemical Shifts
inferred← citeshttps://doi.org/10.1021/acs.jpclett.7b02428openalex-snapshot
Nonconventional C–H···F Hydrogen Bonds Support a Tetrad Flip in Modified G-Quadruplexes
inferred← citeshttps://doi.org/10.1021/acschembio.6b01096openalex-snapshot
Tracing Effects of Fluorine Substitutions on G-Quadruplex Conformational Changes
inferred← citeshttps://doi.org/10.1021/jacs.6c03261openalex-snapshot
A Guanine Ribonucleotide Atypically Adaptive to the Syn Glycosidic Conformation in a Human Telomeric DNA–TERRA RNA Hybrid G-Quadruplex with (3 + 1) Mixed Strand Orientations Studied by NMR
inferred← citeshttps://doi.org/10.1021/jacs.7b00648openalex-snapshot
Unexpected Position-Dependent Effects of Ribose G-Quartets in G-Quadruplexes
inferred← citeshttps://doi.org/10.1039/c8nj01931bopenalex-snapshot
NMR-spectroscopic investigation of the complex between tetraazoniapentapheno[6,7- h ]pentaphene and quadruplex DNA Tel26
inferred← citeshttps://doi.org/10.1039/c9ob00360fopenalex-snapshot
α-2′-Deoxyguanosine can switch DNA G-quadruplex topologies from antiparallel to parallel
inferred← citeshttps://doi.org/10.1039/d0cb00211aopenalex-snapshot
Structural motifs and intramolecular interactions in non-canonical G-quadruplexes
inferred← citeshttps://doi.org/10.1093/nar/gkaa720openalex-snapshot
Locked nucleic acid building blocks as versatile tools for advanced G-quadruplex design
inferred← citeshttps://doi.org/10.1093/nar/gkab028openalex-snapshot
NMR structural study on the self-trimerization of d(GTTAGG) into a dynamic trimolecular G-quadruplex assembly preferentially in Na+ solution with a moderate K+ tolerance
inferred← citeshttps://doi.org/10.1093/nar/gkx566openalex-snapshot
Monomolecular G-quadruplex structures with inversion of polarity sites: new topologies and potentiality
inferred← citeshttps://doi.org/10.1155/2017/1641845openalex-snapshot
In What Ways Do Synthetic Nucleotides and Natural Base Lesions Alter the Structural Stability of G-Quadruplex Nucleic Acids?
inferred← citeshttps://doi.org/10.1246/bcsj.20220290openalex-snapshot
NMR Analyses of Carbohydrate–Water and Water–Water Interactions in Water/DMSO Mixed Solvents, Highlighting Various Hydration Behaviors of Monosaccharides Glucose, Galactose and Mannose
inferred← citeshttps://doi.org/10.3390/biom11091332openalex-snapshot
Recognition Interface of the Thrombin Binding Aptamer Requires Antiparallel Topology of the Quadruplex Core
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