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Rapid Multivariate Analysis Approach to Explore Differential Spatial Protein Profiles in Tissue

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Imaging mass spectrometry
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Annexins I and IV inhibit Staphylococcus aureus attachment to human macrophages
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Sensitive Immunoassay of Tissue Cell Proteins Procured by Laser Capture Microdissection
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Localized in Situ Hydrogel-Mediated Protein Digestion and Extraction Technique for on-Tissue Analysis
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Spatially-Directed Protein Identification from Tissue Sections by Top-Down LC-MS/MS with Electron Transfer Dissociation
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MALDI Imaging and in Situ Identification of Integral Membrane Proteins from Rat Brain Tissue Sections
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Histology-Directed Microwave Assisted Enzymatic Protein Digestion for MALDI MS Analysis of Mammalian Tissue
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Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography–Mass Spectrometry for High-Throughput Single-Cell Proteomics
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Liquid Extraction Surface Analysis Mass Spectrometry Coupled with Field Asymmetric Waveform Ion Mobility Spectrometry for Analysis of Intact Proteins from Biological Substrates
inferredcites →https://doi.org/10.1021/acs.analchem.5b04281openalex-snapshot
MALDI Imaging of Liquid Extraction Surface Analysis Sampled Tissue
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MicroLESA: Integrating Autofluorescence Microscopy, In Situ Micro-Digestions, and Liquid Extraction Surface Analysis for High Spatial Resolution Targeted Proteomic Studies
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A Simple Optimization Workflow to Enable Precise and Accurate Imputation of Missing Values in Proteomic Data Sets
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Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies
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Spatially Targeted Proteomics of the Host–Pathogen Interface during Staphylococcal Abscess Formation
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Analysis of Tissue Specimens by Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry in Biological and Clinical Research
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A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores
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MALDI Imaging mass spectrometry: current frontiers and perspectives in pathology research and practice
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Characterization of glomerular diseases using proteomic analysis of laser capture microdissected glomeruli
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Mass spectrometry-based proteomics
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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
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The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
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A new role for host annexin A2 in establishing bacterial adhesion to vascular endothelial cells: lines of evidence from atomic force microscopy and an in vivo study
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Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells
inferredcites →https://doi.org/10.1038/s41467-019-13858-zopenalex-snapshot
Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution
inferredcites →https://doi.org/10.1038/s41598-017-19120-0openalex-snapshot
Missing Value Imputation Approach for Mass Spectrometry-based Metabolomics Data
inferredcites →https://doi.org/10.1038/sj.onc.1204685openalex-snapshot
Oral cancer in vivo gene expression profiling assisted by laser capture microdissection and microarray analysis
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Clumping factor A of Staphylococcus aureus interacts with AnnexinA2 on mammary epithelial cells
inferredcites →https://doi.org/10.1042/bj20060195openalex-snapshot
Calcium-dependent and -independent interactions of the S100 protein family
inferredcites →https://doi.org/10.1074/mcp.tir118.000686openalex-snapshot
Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets
inferredcites →https://doi.org/10.1080/14789450.2017.1352473openalex-snapshot
Abundance matters: role of albumin in diabetes, a proteomics perspective
inferredcites →https://doi.org/10.1089/omi.2013.0017openalex-snapshot
Application of Machine Learning to Proteomics Data: Classification and Biomarker Identification in Postgenomics Biology
inferredcites →https://doi.org/10.1093/bib/bbz163openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/btp362openalex-snapshot
A statistical framework for protein quantitation in bottom-up MS-based proteomics
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circlize implements and enhances circular visualization in R
inferredcites →https://doi.org/10.1093/nar/gkaa1100openalex-snapshot
UniProt: the universal protein knowledgebase in 2021
inferredcites →https://doi.org/10.1093/nar/gkaa1106openalex-snapshot
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API
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Matplotlib: A 2D Graphics Environment
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Least squares quantization in PCM
inferredcites →https://doi.org/10.1111/imm.13239openalex-snapshot
Annexin A3 in sepsis: novel perspectives from an exploration of public transcriptome data
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The Elements of Statistical Learning: Data Mining, Inference, and Prediction
inferredcites →https://doi.org/10.1126/scitranslmed.aan6361openalex-snapshot
Integrated molecular imaging reveals tissue heterogeneity driving host-pathogen interactions
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Host-Pathogen Interactions: Basic Concepts of Microbial Commensalism, Colonization, Infection, and Disease
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Computational Methods for Understanding Mass Spectrometry–Based Shotgun Proteomics Data
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Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry for the Investigation of Proteins and Peptides
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The Use of Laser Capture Microscopy in Proteomics Research – A Review
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Proteomics in Cancer Biomarkers Discovery: Challenges and Applications
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Progression-Specific Genes Identified by Expression Profiling of Matched Ductal Carcinomas In situ and Invasive Breast Tumors, Combining Laser Capture Microdissection and Oligonucleotide Microarray Analysis
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Proteomics of the Heart
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Staphylococcus aureus α-Toxin Induces Actin Filament Remodeling in Human Airway Epithelial Model Cells
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Prevalence dependent calibration of a predictive model for nasal carriage of methicillin-resistant Staphylococcus aureus
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Mass spectrometry for translational proteomics: progress and clinical implications
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An optimised method for the proteomic profiling of full thickness human skin
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Proteomic Analysis of the Human Skin Proteome after In Vivo Treatment with Sodium Dodecyl Sulphate
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Laser capture microdissection: Big data from small samples.
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Proteomics and heart disease: identifying biomarkers of clinical utility
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Annexin A5 Increases Survival in Murine Sepsis Model by Inhibiting HMGB1-Mediated Proinflammation and Coagulation
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Advances in Current Diabetes Proteomics: From the Perspectives of Label- free Quantification and Biomarker Selection
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Algorithm AS 136: A K-Means Clustering Algorithm
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The application of proteomics to diabetes
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Annexin A2-Mediated Internalization of Staphylococcus aureus into Bovine Mammary Epithelial Cells Requires Its Interaction with Clumping Factor B
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Effect of venous dexamethasone, oral caffeine and acetaminophen on relative frequency and intensity of postdural puncture headache after spinal anesthesia

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