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X-ray Crystallographic Structures as a Source of Ligand Alignment in 3D-QSAR

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0470845015.cca030openalex-snapshot
Comparative Molecular Field Analysis (CoMFA)
inferredcites →https://doi.org/10.1002/prot.20921openalex-snapshot
MUSTANG: A multiple structural alignment algorithm
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Pharmacophore Refinement and 3D‐QSAR Studies of Histamine H3 Antagonists
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3D‐QSAR Studies on a Class of IKK‐2 Inhibitors with GALAHAD Used to Develop Molecular Alignment Models
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Molecular Docking and 3‐D QSAR Studies of Substituted 2,2‐Bisaryl‐Bicycloheptanes as Human 5‐Lipoxygenase‐Activating Protein (FLAP) Inhibitors
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Two personal perspectives on a key issue in contemporary 3D QSAR
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3D QSAR in Drug Design
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Therapeutic potential of positive AMPA modulators and their relationship to AMPA receptor subunits. A review of preclinical data
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3D-QSAR illusions
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GALAHAD: 1. Pharmacophore identification by hypermolecular alignment of ligands in 3D
inferredcites →https://doi.org/10.1007/s10822-008-9227-2openalex-snapshot
Using a staged multi-objective optimization approach to find selective pharmacophore models
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Comparative molecular field analysis of fenoterol derivatives: A platform towards highly selective and effective β2-adrenergic receptor agonists
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Molecular modeling studies, synthesis, configurational stability and biological activity of 8-chloro-2,3,5,6-tetrahydro-3,6-dimethyl-pyrrolo[1,2,3-de]-1,2,4-benzothiadiazine 1,1-dioxide
inferredcites →https://doi.org/10.1016/j.bmcl.2010.07.138openalex-snapshot
A novel series of positive modulators of the AMPA receptor: Discovery and structure based hit-to-lead studies
inferredcites →https://doi.org/10.1016/j.bmcl.2010.11.098openalex-snapshot
Structure based evolution of a novel series of positive modulators of the AMPA receptor
inferredcites →https://doi.org/10.1016/j.chembiol.2007.10.012openalex-snapshot
Structural Proof of a Dimeric Positive Modulator Bridging Two Identical AMPA Receptor-Binding Sites
inferredcites →https://doi.org/10.1016/j.conb.2005.05.004openalex-snapshot
Glutamate receptor ion channels
inferredcites →https://doi.org/10.1016/j.ejmech.2006.09.022openalex-snapshot
3D-QSAR study of sulfonamide inhibitors of human carbonic anhydrase II
inferredcites →https://doi.org/10.1016/j.ejmech.2008.09.027openalex-snapshot
Receptor-based 3D-QSAR studies of checkpoint Wee1 kinase inhibitors
inferredcites →https://doi.org/10.1016/j.ejmech.2008.12.008openalex-snapshot
3D-QSAR studies of HDACs inhibitors using pharmacophore-based alignment
inferredcites →https://doi.org/10.1016/j.jmb.2009.07.002openalex-snapshot
Distinct Structural Features of Cyclothiazide Are Responsible for Effects on Peak Current Amplitude and Desensitization Kinetics at iGluR2
inferredcites →https://doi.org/10.1016/j.jmgm.2004.04.004openalex-snapshot
Alignment of three-dimensional molecules using an image recognition algorithm
inferredcites →https://doi.org/10.1016/s0028-3908(99)00105-7openalex-snapshot
The contributions of GluR2 to allosteric modulation of AMPA receptors
inferredcites →https://doi.org/10.1016/s1359-6446(97)01079-9openalex-snapshot
QSAR and 3D QSAR in drug design Part 1: methodology
inferredcites →https://doi.org/10.1016/s1359-6446(97)01084-2openalex-snapshot
QSAR and 3D QSAR in drug design Part 2: applications and problems
inferredcites →https://doi.org/10.1021/bi1000678openalex-snapshot
Molecular Mechanism of Flop Selectivity and Subsite Recognition for an AMPA Receptor Allosteric Modulator: Structures of GluA2 and GluA3 in Complexes with PEPA
inferredcites →https://doi.org/10.1021/bi901127sopenalex-snapshot
Probing the Allosteric Modulator Binding Site of GluR2 with Thiazide Derivatives
inferredcites →https://doi.org/10.1021/ci0342268openalex-snapshot
Comparing the Quality and Predictiveness between 3D QSAR Models Obtained from Manual and Automated Alignment
inferredcites →https://doi.org/10.1021/ci2002704openalex-snapshot
Rapid Shape-Based Ligand Alignment and Virtual Screening Method Based on Atom/Feature-Pair Similarities and Volume Overlap Scoring
inferredcites →https://doi.org/10.1021/ci700439zopenalex-snapshot
Exploiting Structure–Activity Relationships in Docking
inferredcites →https://doi.org/10.1021/ci8001556openalex-snapshot
Virtual Screening for R-Groups, including Predicted pIC50 Contributions, within Large Structural Databases, Using Topomer CoMFA
inferredcites →https://doi.org/10.1021/ja00226a005openalex-snapshot
Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
inferredcites →https://doi.org/10.1021/ja01062a035openalex-snapshot
p-σ-π Analysis. A Method for the Correlation of Biological Activity and Chemical Structure
inferredcites →https://doi.org/10.1021/jm020155copenalex-snapshot
Do Structurally Similar Molecules Have Similar Biological Activity?
inferredcites →https://doi.org/10.1021/jm1005429openalex-snapshot
Discovery ofN-[(2S)-5-(6-Fluoro-3-pyridinyl)-2,3-dihydro-1H-inden-2-yl]-2-propanesulfonamide, a Novel Clinical AMPA Receptor Positive Modulator
inferredcites →https://doi.org/10.1021/jm100679eopenalex-snapshot
Integration of Lead Optimization with Crystallography for a Membrane-Bound Ion Channel Target: Discovery of a New Class of AMPA Receptor Positive Allosteric Modulators
inferredcites →https://doi.org/10.1021/jm960290nopenalex-snapshot
Neighborhood Behavior: A Useful Concept for Validation of “Molecular Diversity” Descriptors
inferredcites →https://doi.org/10.1021/jm990387kopenalex-snapshot
Derivation of Pharmacophore and CoMFA Models for Leukotriene D4 Receptor Antagonists of the Quinolinyl(bridged)aryl Series
inferredcites →https://doi.org/10.1038/417245aopenalex-snapshot
Mechanism of glutamate receptor desensitization
inferredcites →https://doi.org/10.1038/nature08624openalex-snapshot
X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor
inferredcites →https://doi.org/10.1042/bj20111221openalex-snapshot
Thermodynamics and structural analysis of positive allosteric modulation of the ionotropic glutamate receptor GluA2
inferredcites →https://doi.org/10.1124/mol.110.070243openalex-snapshot
Structural and Functional Analysis of Two New Positive Allosteric Modulators of GluA2 Desensitization and Deactivation
inferredcites →https://doi.org/10.1523/jneurosci.2567-05.2005openalex-snapshot
Mechanism of Positive Allosteric Modulators Acting on AMPA Receptors
inferredcites →https://doi.org/10.2174/092986709789578213openalex-snapshot
How to Recognize and Workaround Pitfalls in QSAR Studies: A Critical Review
inferredcites →https://doi.org/10.2174/092986711794927702openalex-snapshot
How to Generate Reliable and Predictive CoMFA Models
inferredcites →https://doi.org/10.2174/1568026023392887openalex-snapshot
Current State and Perspectives of 3D-QSAR
inferredcites →https://doi.org/10.2174/156802610790232260openalex-snapshot
3D-QSAR in Drug Design - A Review
inferredcites →https://doi.org/10.3390/molecules14051660openalex-snapshot
On Two Novel Parameters for Validation of Predictive QSAR Models

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1007/s10822-016-9909-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s11172-016-1341-zopenalex-snapshot
Pharmacophore analysis of positive allosteric modulators of AMPA receptors
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inferred← citeshttps://doi.org/10.1021/acs.jcim.6b00290openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.9b00020openalex-snapshot
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3D-QSAR study for the development of chalcone-based inhibitors targeting ovarian cancer cells with experimental validation
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