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Do Structurally Similar Molecules Have Similar Biological Activity?

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Similarity and Dissimilarity: A Medicinal Chemist’s View
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Assessing the ability of chemical similarity measures to discriminate between active and inactive compounds
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Computational Chemical Graph Theory
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Enzyme flexibility, solvent and ‘weak’ interactions characterize thrombin–ligand interactions: implications for drug design
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Diverse Viewpoints on Computational Aspects of Molecular Diversity
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Simulation Analysis of Experimental Design Strategies for Screening Random Compounds as Potential New Drugs and Agrochemicals
inferredcites →https://doi.org/10.1021/ci000305xopenalex-snapshot
Mini-fingerprints Detect Similar Activity of Receptor Ligands Previously Recognized Only by Three-Dimensional Pharmacophore-Based Methods
inferredcites →https://doi.org/10.1021/ci000322mopenalex-snapshot
Molecular Descriptors for Effective Classification of Biologically Active Compounds Based on Principal Component Analysis Identified by a Genetic Algorithm
inferredcites →https://doi.org/10.1021/ci000327jopenalex-snapshot
Evaluation of Descriptors and Mini-Fingerprints for the Identification of Molecules with Similar Activity
inferredcites →https://doi.org/10.1021/ci000397qopenalex-snapshot
Prediction of Biological Activity for High-Throughput Screening Using Binary Kernel Discrimination
inferredcites →https://doi.org/10.1021/ci9501047openalex-snapshot
Use of Structure−Activity Data To Compare Structure-Based Clustering Methods and Descriptors for Use in Compound Selection
inferredcites →https://doi.org/10.1021/ci950274jopenalex-snapshot
Chemical Similarity Using Physiochemical Property Descriptors
inferredcites →https://doi.org/10.1021/ci950275bopenalex-snapshot
Chemical Similarity Using Geometric Atom Pair Descriptors
inferredcites →https://doi.org/10.1021/ci960373copenalex-snapshot
The Information Content of 2D and 3D Structural Descriptors Relevant to Ligand-Receptor Binding
inferredcites →https://doi.org/10.1021/ci960466uopenalex-snapshot
Similarity Searching in Files of Three-Dimensional Chemical Structures: Evaluation of the EVA Descriptor and Combination of Rankings Using Data Fusion
inferredcites →https://doi.org/10.1021/ci970056lopenalex-snapshot
Lead Discovery Using Stochastic Cluster Analysis (SCA): A New Method for Clustering Structurally Similar Compounds
inferredcites →https://doi.org/10.1021/ci970086oopenalex-snapshot
A New Approach to Design Virtual Combinatorial Library with Genetic Algorithm Based on 3D Grid Property
inferredcites →https://doi.org/10.1021/ci970420gopenalex-snapshot
The Effectiveness of Reactant Pools for Generating Structurally-Diverse Combinatorial Libraries
inferredcites →https://doi.org/10.1021/ci970437zopenalex-snapshot
On the Properties of Bit String-Based Measures of Chemical Similarity
inferredcites →https://doi.org/10.1021/ci9800211openalex-snapshot
Chemical Similarity Searching
inferredcites →https://doi.org/10.1021/ci980103popenalex-snapshot
Rational Combinatorial Library Design. 3. Simulated Annealing Guided Evaluation (SAGE) of Molecular Diversity: A Novel Computational Tool for Universal Library Design and Database Mining
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Unsupervised Data Base Clustering Based on Daylight's Fingerprint and Tanimoto Similarity: A Fast and Automated Way To Cluster Small and Large Data Sets
inferredcites →https://doi.org/10.1021/ci990263gopenalex-snapshot
Similarity Searching in Files of Three-Dimensional Chemical Structures: Analysis of the BIOSTER Database Using Two-Dimensional Fingerprints and Molecular Field Descriptors
inferredcites →https://doi.org/10.1021/ci990308dopenalex-snapshot
Database Searching for Compounds with Similar Biological Activity Using Short Binary Bit String Representations of Molecules
inferredcites →https://doi.org/10.1021/ci990316uopenalex-snapshot
Combinatorial Preferences Affect Molecular Similarity/Diversity Calculations Using Binary Fingerprints and Tanimoto Coefficients
inferredcites →https://doi.org/10.1021/jm000392kopenalex-snapshot
Chemical Similarity Searches Using Latent Semantic Structural Indexing (LaSSI) and Comparison to TOPOSIM
inferredcites →https://doi.org/10.1021/jm00149a003openalex-snapshot
Synthesis and structure-activity relationships of novel arylfluoroquinolone antibacterial agents
inferredcites →https://doi.org/10.1021/jm00149a004openalex-snapshot
4-Substituted 5-[m-(trifluoromethyl)phenoxy]primaquine analogs as potential antimalarial agents
inferredcites →https://doi.org/10.1021/jm00161a036openalex-snapshot
Synthesis and structure-activity relationships of new arylfluoronaphthyridine antibacterial agents
inferredcites →https://doi.org/10.1021/jm00386a011openalex-snapshot
Synthesis and structure-activity relationship of 1-aryl-6,8-difluoroquinolone antibacterial agents
inferredcites →https://doi.org/10.1021/jm00386a012openalex-snapshot
Synthesis, biological evaluation, and quantitative structure-activity relationship analysis of 2-hydroxy-1H-isoindolediones as new cytostatic agents
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Measuring Molecular Similarity and Diversity: Total Pharmacophore Diversity
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One-Dimensional Molecular Representations and Similarity Calculations: Methodology and Validation
inferredcites →https://doi.org/10.1021/jm950800yopenalex-snapshot
Molecular Similarity Based on DOCK-Generated Fingerprints
inferredcites →https://doi.org/10.1021/jm960290nopenalex-snapshot
Neighborhood Behavior: A Useful Concept for Validation of “Molecular Diversity” Descriptors
inferredcites →https://doi.org/10.1021/jm960352+openalex-snapshot
Selecting Optimally Diverse Compounds from Structure Databases: A Validation Study of Two-Dimensional and Three-Dimensional Molecular Descriptors
inferredcites →https://doi.org/10.1021/jm970033yopenalex-snapshot
Designing Combinatorial Library Mixtures Using a Genetic Algorithm
inferredcites →https://doi.org/10.1021/jm9700878openalex-snapshot
Random or Rational Design? Evaluation of Diverse Compound Subsets from Chemical Structure Databases
inferredcites →https://doi.org/10.1021/jm990073xopenalex-snapshot
Evaluation of PMF Scoring in Docking Weak Ligands to the FK506 Binding Protein
inferredcites →https://doi.org/10.1080/10629369808033260openalex-snapshot
An Evaluation of Structural Descriptors and Clustering Methods for Use in Diversity Selection
inferredcites →https://doi.org/10.1128/aac.33.2.131openalex-snapshot
Structure-activity relationships of the fluoroquinolones
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Multiobjective optimization of combinatorial libraries

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Virtual Screening in Lead Discovery
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Inhibitory effect of N-ethyl-3-amino-5-oxo-4-phenyl-2,5-dihydro-1H-pyrazole-1-carbothioamide on Haemophilus spp. planktonic or biofilm-forming cells
inferred← citeshttps://doi.org/10.1007/s00044-017-2060-1openalex-snapshot
Integrated in silico–in vitro screening of ovarian cancer peroxisome proliferator-activated receptor-γ agonists against a biogenic compound library
inferred← citeshttps://doi.org/10.1007/s00044-021-02759-wopenalex-snapshot
Synthesis and antibacterial activity of novel Schiff bases of thiosemicarbazone derivatives with adamantane moiety
inferred← citeshttps://doi.org/10.1007/s00204-015-1618-2openalex-snapshot
Toward a unifying strategy for the structure-based prediction of toxicological endpoints
inferred← citeshttps://doi.org/10.1007/s00726-017-2426-1openalex-snapshot
Conformational stabilization of FOX–DNA complex architecture to sensitize prostate cancer chemotherapy
inferred← citeshttps://doi.org/10.1007/s10522-022-09974-xopenalex-snapshot
Exploring the fuzzy border between senolytics and senomorphics with chemoinformatics and systems pharmacology
inferred← citeshttps://doi.org/10.1007/s10698-014-9203-yopenalex-snapshot
Similarity and representation in chemical knowledge practices
inferred← citeshttps://doi.org/10.1007/s10698-020-09380-6openalex-snapshot
The QSAR similarity principle in the deep learning era: Confirmation or revision?
inferred← citeshttps://doi.org/10.1007/s10822-004-6986-2openalex-snapshot
The de novo design of median molecules within a property range of interest
inferred← citeshttps://doi.org/10.1007/s10822-006-9096-5openalex-snapshot
Evaluation of machine-learning methods for ligand-based virtual screening
inferred← citeshttps://doi.org/10.1007/s10822-007-9145-8openalex-snapshot
Virtual screening applications: a study of ligand-based methods and different structure representations in four different scenarios
inferred← citeshttps://doi.org/10.1007/s10822-008-9253-0openalex-snapshot
Comparison of structure fingerprint and molecular interaction field based methods in explaining biological similarity of small molecules in cell-based screens
inferred← citeshttps://doi.org/10.1007/s10822-008-9255-yopenalex-snapshot
ChemGPS-NPWeb: chemical space navigation online
inferred← citeshttps://doi.org/10.1007/s10822-009-9285-0openalex-snapshot
Analysis and use of fragment-occurrence data in similarity-based virtual screening
inferred← citeshttps://doi.org/10.1007/s10822-010-9330-zopenalex-snapshot
Tautomers and topomers: challenging the uncertainties of direct physicochemical modeling
inferred← citeshttps://doi.org/10.1007/s10822-010-9396-7openalex-snapshot
In silico strategies for the selection of chelating compounds with potential application in metal-promoted neurodegenerative diseases
inferred← citeshttps://doi.org/10.1007/s10822-011-9416-2openalex-snapshot
Local neighborhood behavior in a combinatorial library context
inferred← citeshttps://doi.org/10.1007/s10822-025-00687-0openalex-snapshot
Design, synthesis, deep learning-guided prediction, and biological evaluation of novel pyridine-thiophene-based imine-benzalacetophenone hybrids as promising antimicrobial agent
inferred← citeshttps://doi.org/10.1007/s10910-010-9745-8openalex-snapshot
Application of Shannon-like diversity measures to cell-based chemistry spaces
inferred← citeshttps://doi.org/10.1007/s10910-013-0302-0openalex-snapshot
The effect of the diversity of molecules in sets and similarity of sets on the quality of prediction in QSAR studies
inferred← citeshttps://doi.org/10.1007/s10989-018-9782-xopenalex-snapshot
Structure-Based Stepwise Screening of PPARγ Antagonists as Potential Competitors with NCOA1 Coactivator Peptide for PPARγ CIS Site
inferred← citeshttps://doi.org/10.1007/s11030-006-2153-0openalex-snapshot
Similarity study of serine proteases inhibitors
inferred← citeshttps://doi.org/10.1007/s11030-006-8697-1openalex-snapshot
Molecular similarity and diversity in chemoinformatics: From theory to applications
inferred← citeshttps://doi.org/10.1007/s11030-006-9039-zopenalex-snapshot
Reverse fingerprinting, similarity searching by group fusion and fingerprint bit importance
inferred← citeshttps://doi.org/10.1007/s11030-015-9624-0openalex-snapshot
Discovery of new $${\varvec{Mycobacterium~tuberculosis}}$$ M y c o b a c t e r i u m t u b e r c u l o s i s proteasome inhibitors using a knowledge-based computational screening approach
inferred← citeshttps://doi.org/10.1007/s11030-015-9637-8openalex-snapshot
Erratum to: Discovery of new Mycobacterium tuberculosis proteasome inhibitors using a knowledge-based computational screening approach
inferred← citeshttps://doi.org/10.1007/s11030-021-10250-2openalex-snapshot
QSAR modeling without descriptors using graph convolutional neural networks: the case of mutagenicity prediction
inferred← citeshttps://doi.org/10.1007/s11030-022-10447-zopenalex-snapshot
Creation of targeted compound libraries based on 3D shape recognition
inferred← citeshttps://doi.org/10.1007/s11030-022-10514-5openalex-snapshot
Chemical similarity of molecules with physiological response
inferred← citeshttps://doi.org/10.1007/s11030-026-11682-4openalex-snapshot
A synergistic deep learning and machine learning framework for screening heterocyclic compounds against ALDH1A1
inferred← citeshttps://doi.org/10.1007/s11094-017-1563-xopenalex-snapshot
Web Resources for Discovery and Development of New Medicines
inferred← citeshttps://doi.org/10.1007/s11094-020-02098-xopenalex-snapshot
9,10-Anthraquinone Dithiocarbamates as Potential Pharmaceutical Substances with Pleiotropic Actions: Computerized Prediction of Biological Activity and Experimental Validation
inferred← citeshttps://doi.org/10.1007/s11101-009-9160-6openalex-snapshot
Natural products in modern life science
inferred← citeshttps://doi.org/10.1007/s11164-014-1841-0openalex-snapshot
Synthesis and chemoinformatics analysis of N-aryl-β-alanine derivatives
inferred← citeshttps://doi.org/10.1007/s11172-016-1310-6openalex-snapshot
Online resources for the prediction of biological activity of organic compounds
inferred← citeshttps://doi.org/10.1007/s11172-017-1954-xopenalex-snapshot
Computational platform Way2Drug: from the prediction of biological activity to drug repurposing
inferred← citeshttps://doi.org/10.1007/s40203-025-00397-3openalex-snapshot
Screening of antihyperglycemic and cytotoxic properties of Ficus racemosa L. Fruit extract
inferred← citeshttps://doi.org/10.1007/s40242-013-2384-4openalex-snapshot
Inhibition of CK2 Activity by TCDD via binding to ATP-competitive binding site of catalytic subunit: Insight from computational studies
inferred← citeshttps://doi.org/10.1007/s42250-024-00983-6openalex-snapshot
Review of Contemporary QSAR Study Approach
inferred← citeshttps://doi.org/10.1016/b0-08-045044-x/00051-1openalex-snapshot
Bioisosterism
inferred← citeshttps://doi.org/10.1016/b0-08-045044-x/00249-2openalex-snapshot
Compound Selection Using Measures of Similarity and Dissimilarity
inferred← citeshttps://doi.org/10.1016/b0-08-045044-x/00257-1openalex-snapshot
Library Design: Reactant and Product-Based Approaches
inferred← citeshttps://doi.org/10.1016/b0-08-045044-x/00278-9openalex-snapshot
Biological Fingerprints
inferred← citeshttps://doi.org/10.1016/b978-0-08-051337-9.50007-9openalex-snapshot
Drug Discovery, Design, and Development
inferred← citeshttps://doi.org/10.1016/b978-0-08-099420-8.00003-1openalex-snapshot
Step IIIa: Biological Hit Discovery Through High-Throughput Screening (HTS): Random Approaches and Rational Design
inferred← citeshttps://doi.org/10.1016/b978-0-08-100098-4.00005-3openalex-snapshot
Quantitative Structure–Activity Relationships
inferred← citeshttps://doi.org/10.1016/b978-0-08-100295-7.00009-8openalex-snapshot
Prediction of perception using structure–activity models
inferred← citeshttps://doi.org/10.1016/b978-0-12-382030-3.00002-7openalex-snapshot
Lead Discovery and Lead Modification
inferred← citeshttps://doi.org/10.1016/b978-0-12-394399-6.00016-3openalex-snapshot
From Drug Discovery QSAR to Predictive Materials QSPR
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.02568-3openalex-snapshot
Library Design: Reactant and Product-Based Approaches
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.12283-8openalex-snapshot
Drug Repurposing Review
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.12345-5openalex-snapshot
Chemical Data Formats, Fingerprints, and Other Molecular Descriptions for Database Analysis and Searching
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.12353-4openalex-snapshot
Lessons and Successes in the Use of Molecular Fields
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.14703-1openalex-snapshot
Chemometrics for QSAR Modeling
inferred← citeshttps://doi.org/10.1016/b978-0-12-420172-9.00010-2openalex-snapshot
Regulatory Framework and Guidance to the Evaluation of the Abuse Liability of Drugs in the United States and Europe
inferred← citeshttps://doi.org/10.1016/b978-0-12-801238-3.11522-3openalex-snapshot
Applying Systems Toxicology Methods to Drug Safety
inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20157-xopenalex-snapshot
Small Molecule Drug Design
inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20190-8openalex-snapshot
Fingerprints and Pharmacophores
inferred← citeshttps://doi.org/10.1016/b978-0-12-816125-8.00016-xopenalex-snapshot
In Silico Modeling of FDA-Approved Drugs for Discovery of Anticandida Agents: A Drug-Repurposing Approach
inferred← citeshttps://doi.org/10.1016/b978-0-12-820045-2.00004-0openalex-snapshot
Data types and resources
inferred← citeshttps://doi.org/10.1016/b978-0-12-822249-2.00002-5openalex-snapshot
Approaches using AI in medicinal chemistry
inferred← citeshttps://doi.org/10.1016/b978-0-12-822312-3.00011-4openalex-snapshot
Modern Tools and Techniques in Computer-Aided Drug Design
inferred← citeshttps://doi.org/10.1016/b978-0-323-95927-8.00017-7openalex-snapshot
Modeling cannabis and Catha edulis bioactives and derivatives: insights from computational and theoretical predictions
inferred← citeshttps://doi.org/10.1016/b978-0-443-15862-9.00002-3openalex-snapshot
Lead Discovery
inferred← citeshttps://doi.org/10.1016/b978-0-443-18638-7.00023-2openalex-snapshot
A systematic chemoinformatic analysis of chemical space, scaffolds and antimicrobial activity of LpxC inhibitors
inferred← citeshttps://doi.org/10.1016/b978-008045382-8.00678-xopenalex-snapshot
Topical Chemical Space Relation to Biological Space
inferred← citeshttps://doi.org/10.1016/bs.apar.2019.12.003openalex-snapshot
A perspective on the discovery of selected compounds with anthelmintic activity against the barber's pole worm—Where to from here?
inferred← citeshttps://doi.org/10.1016/bs.armc.2022.09.002openalex-snapshot
Using filters in virtual screening: A comprehensive guide to minimize errors and maximize efficiency
inferred← citeshttps://doi.org/10.1016/bs.pmch.2017.12.003openalex-snapshot
Big Data in Drug Discovery
inferred← citeshttps://doi.org/10.1016/c2014-1-02188-6openalex-snapshot
Comprehensive Medicinal Chemistry III
inferred← citeshttps://doi.org/10.1016/j.aca.2009.04.019openalex-snapshot
Global, local and novel consensus quantitative structure-activity relationship studies of 4-(Phenylaminomethylene) isoquinoline-1, 3 (2H, 4H)-diones as potent inhibitors of the cyclin-dependent kinase 4
inferred← citeshttps://doi.org/10.1016/j.ajpath.2014.04.002openalex-snapshot
Identification and Characterization of a Novel Small-Molecule Inhibitor of β-Catenin Signaling
inferred← citeshttps://doi.org/10.1016/j.aquatox.2016.09.006openalex-snapshot
A Bayesian network model for predicting aquatic toxicity mode of action using two dimensional theoretical molecular descriptors
inferred← citeshttps://doi.org/10.1016/j.aquatox.2020.105475openalex-snapshot
High sensitivity of rat cardiomyoblast H9c2(2-1) cells to Gambierdiscus toxic compounds
inferred← citeshttps://doi.org/10.1016/j.atmosenv.2010.05.021openalex-snapshot
Prediction of the adsorption capability onto activated carbon of a large data set of chemicals by local lazy regression method
inferred← citeshttps://doi.org/10.1016/j.bbrc.2020.06.123openalex-snapshot
Pharmacological profile of natural and synthetic compounds with rigid adamantane-based scaffolds as potential agents for the treatment of neurodegenerative diseases
inferred← citeshttps://doi.org/10.1016/j.bcp.2006.10.005openalex-snapshot
Data mining of NCI's anticancer screening database reveals mitochondrial complex I inhibitors cytotoxic to leukemia cell lines
inferred← citeshttps://doi.org/10.1016/j.bcp.2016.01.008openalex-snapshot
Novel non-peptide small molecules preventing IKKβ/NEMO association inhibit NF-κB activation in LPS-stimulated J774 macrophages
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